CmaCh03G014660 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G014660
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 9140774 .. 9142108 (-)
RNA-Seq Expression	CmaCh03G014660
Synteny	CmaCh03G014660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCGGTTTGAAAAGGAGAACGGGGAGACGGAAAACCGAGTCTAATCAATCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCCGCTGGCTGAGCCCGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCAGCGGACAGCAGCTCCCTTGTCAACGTCACTGTGAGTTCCACCAAGTAAAGATTATTTTATCCGCAAATTCCATCGAGTTTGCTCCTAATCAATCGTGCCGCCCAATTGTTTCTAATTGCACAATTCACTCTACACTAATCAATTTGCTTTATCCGCACCTGAATTGACTACTCAATTTGTTATTCCCATTCCATTTCTTTTGGATTTTCTTCTTTTCTAATCTCCGTGGAGCAAGCGGATCACCTACTGCAACGAATACAGCCTTCAAAAGCACTTCTCGCACAGAGAAACAGAGAGAGAAGAGACACCCGGGGTTGAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCTCAGGTTATTTTGTTTCCCTACTTTTGGTTTGGCGACGCGATGGGGGGTACATAATTTTTGTTTTCTTTTTTGGATGGTTCTTTATAGATTACGAGCAGTTATTGATTTAACGTATGGGCCTTCATCTGAGTTGTTATTATTATTGCTCTTTTAATTCTGAAGAAACATAATTGATTGTGTTCTTCATCGGAGACGTTTTTATGTAATATGTATTTGCCGAAGCAGTATATGGTCAATCATGGCAGCTTGTGATCAAGACTCGAGAGAATTTGAATTTGAGGGATCTAATTTTATAAGAAAATTTCATGAACATGCATCATAGAGCTATCTGGTTTGTAAGGATATAAATTTTGGGAACGAGTAGGATTATCAGCGTCAAGAAATTTATAAACTTAATCCGCATCCCTGCAATCCTTTGCGCGGAACTTTTTTTTTATAGGTTGGCGAGTGCGGGAAGAATAATTTGGTGAACCTAAGTAAATTACCAGAATATAGTGATCATTTGGTGTTCTTGCGCCTTCTACTGTTATAGGGATGGCTTCAGAATTCTCAATCTATTTCATATCATGAGACATTTGTATTCTTTTGTATTGCACAGTTTCATCATCGGCAGATTTTTCTCTCTTTTTGGTATTTTATCCTTGTTCTTCATCAATATGAAATGATCCAATTATATCATGAAACAATAACCATTATTGTACTTCTTTATATAAGCAGGTGGAAAATAATAATGCCTGA

mRNA sequence

ATGGAAGGCGGTTTGAAAAGGAGAACGGGGAGACGGAAAACCGAGTCTAATCAATCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCCGCTGGCTGAGCCCGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCAGCGGACAGCAGCTCCCTTGTCAACGTCACTCAAGCGGATCACCTACTGCAACGAATACAGCCTTCAAAAGCACTTCTCGCACAGAGAAACAGAGAGAGAAGAGACACCCGGGGTTGAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCTCAGGTGGAAAATAATAATGCCTGA

Coding sequence (CDS)

ATGGAAGGCGGTTTGAAAAGGAGAACGGGGAGACGGAAAACCGAGTCTAATCAATCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCCGCTGGCTGAGCCCGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCAGCGGACAGCAGCTCCCTTGTCAACGTCACTCAAGCGGATCACCTACTGCAACGAATACAGCCTTCAAAAGCACTTCTCGCACAGAGAAACAGAGAGAGAAGAGACACCCGGGGTTGAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCTCAGGTGGAAAATAATAATGCCTGA

Protein sequence

MEGGLKRRTGRRKTESNQSNTWAVEIGRPNHPLAEPEPTWSHVAGHNLLVRDTCWYPLIVSSTLFNSVAPEAVSESGLQRTAAPLSTSLKRITYCNEYSLQKHFSHRETEREETPGVEAPIINSALLVVFFPQVENNNA

Homology

[Close]

BLAST of CmaCh03G014660 vs. NCBI nr
Match: KAG7034782.1 (hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-43
Identity = 99/148 (66.89%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 1   MEGGLKRRTGRRKTESNQSNTWAVEIGRPNHPLAEPEPTWSHVAGHNLLVRDTCWYPLIV 60
           MEGGLK+R GRRKTESNQ NTWAVEIGRPNH LAEPEPTWSHVAGHNLLVR    + L+ 
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRG---HVLVP 60

Query: 61  SSTLFNSVAPEAVSESGLQRTAAPLSTSL---------KRITYCNEYSLQKHFSHRETER 120
              + N++        G ++  +  S+SL         KRITYCNEY LQKHFSHRETER
Sbjct: 61  FDCIVNAIQLRRAG-GGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETER 120

Query: 121 EETPGVEAPIINSALLVVFFPQVENNNA 140
           EETP V+APIINSALLVVFFP+VENNNA
Sbjct: 121 EETPRVKAPIINSALLVVFFPEVENNNA 144

[Close]

BLAST of CmaCh03G014660 vs. NCBI nr
Match: KAG6581494.1 (hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 4.5e-33
Identity = 84/139 (60.43%), Postives = 98/139 (70.50%), Query Frame = 0


Query: 1   MEGGLKRRTGRRKTESNQSNTWAVEIGRPNHPLAEPEPTWSHVAGHNLLVRDTCWYPLIV 60
           MEGGLK+R GRRKTESNQ NTWAVEIGRPNH LAEPEPTWSHVAGHNLLVR    + L+ 
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRG---HVLVS 60

Query: 61  SSTLFNSVAPEAVSESGLQRTAAPLSTSLKRITYCNEYSLQKHFSHRETEREETPGVEAP 120
              + N++        G ++  +  S+SL  +T           S +ETEREETP V+AP
Sbjct: 61  FDCIVNAIQLRRAG-GGFRKWTSADSSSLVNVTAS---------STKETEREETPRVKAP 120

Query: 121 IINSALLVVFFPQVENNNA 140
           IINSALLVVFFP+VENNNA
Sbjct: 121 IINSALLVVFFPEVENNNA 126

The following BLAST results are available for this feature:

BLAST of CmaCh03G014660 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G014660 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G014660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034782.1	2.8e-43	66.89	hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581494.1	4.5e-33	60.43	hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh03G014660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G014660.1	CmaCh03G014660.1	mRNA