CmaCh03G014080 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G014080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 8862893 .. 8864153 (-)
RNA-Seq ExpressionCmaCh03G014080
SyntenyCmaCh03G014080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGAATCGATGTTTAAATCTGTTAACCATTTCCCTTTTGATCTGGAGGAAGGAACGGTCCGCGTCCACACAAAGTCATAGTTTCCGATTGATTTGAGAAATTTGAGTGAAACAGATTTGGTCTGTAACGCTCACCTTCAAAATCCAATCCAAATAATGTGGTGTTGATCCCACCTCTTTTGTCTTAACCTTCAATACGATCACGGCATTCCTCTATCGCTCTTATATTATATTTCTTCTTTCTTTTTTGCACTATCCATTTGTAGACCTCAATCTCTCCCTCCTTCGCTCTTCGTTGTTATCTTTAACCCATCTTCATCACTTCGCTTCATCCATTTTCACTGCCGCATAGAAGGGTACGCTCTCTCTTTCATCTGTTCTTCTGCAATTTCTTGTTTGCCCATCTTCTTTCATCTGGGATTTTGTGGTACTCATTCATCCGTGTCTTCCGAGTTTTGTGTTTCATGTAGTTCTTAATGTTTCTACTCTGTTTCTTCATATGGGTTTGGGTTATTTTAGACTGATTTTTACGTATGTTATTTGAATTTGCTTTTGGTGATGATGGGTGGGCTTGTTTTCTGTTTCATTCTTTATTTATCGATGGAACTTGAATGAACGGAATCTGATAACTGGTTTACTTGTTAATCAATGGTTATTTGATATGGTATCTGTGAGATCCAACATTGCAACCTTCTTTATTGCAACATTCCAAGGGTGTGGAAACCTCTTCCTAGCCCGTTTTAAAACCTTGGGAAAAGCCCAACAAGTAAAAGGTAGAGCACGAAGAGGACAATATCTGCTAGCGTAGGTTTAGGGTTTAGAGTATTAGAGCCACATGAGACGGTGTGCAACAAGGACTGAGGAGTGGACATGAGGCAGTGTGCAGCAAGGATGTTGGGCCCCGAAGGGAGTGGATTTGGTGGGGGGCCCATTGATTCGAGAAAAGAACGAGTCCTAGCAAGGACGTTGGGCCCCGAAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGCTTGAGCTGTTACGGTATCAGCCATCTCAAACATCAATCATACATTCCTTTTCTTGTGGATTCTGTACTATTATGTTTTAAATGTTAATTTCTCGTTCTTGATGAGAATCATTGCTTCACCCCCTTTCACTGTCGTAATTGTTTGAGTTTGGAGAATTCTGATGTCAAACATTTGAGATCGTTTCAATTGCTGGGCTTTGAATTCATTTCTGTCTTTCTTATATACAGTTGTGAGTACTCTGTTTGA

mRNA sequence

ATGTCCGAATCGATGTTTAAATCTGTTAACCATTTCCCTTTTGATCTGGAGGAAGGAACGGTCCGCGTCCACACAAAACCTCAATCTCTCCCTCCTTCGCTCTTCGTTGTTATCTTTAACCCATCTTCATCACTTCGCTTCATCCATTTTCACTGCCGCATAGAAGGTTGTGAGTACTCTGTTTGA

Coding sequence (CDS)

ATGTCCGAATCGATGTTTAAATCTGTTAACCATTTCCCTTTTGATCTGGAGGAAGGAACGGTCCGCGTCCACACAAAACCTCAATCTCTCCCTCCTTCGCTCTTCGTTGTTATCTTTAACCCATCTTCATCACTTCGCTTCATCCATTTTCACTGCCGCATAGAAGGTTGTGAGTACTCTGTTTGA

Protein sequence

MSESMFKSVNHFPFDLEEGTVRVHTKPQSLPPSLFVVIFNPSSSLRFIHFHCRIEGCEYSV
Homology
[Close]
BLAST of CmaCh03G014080 vs. NCBI nr
Match: KAG6581436.1 ((S)-2-hydroxy-acid oxidase GLO1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 8.9e-10
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 5  MFKSVNHFPFDLEEGTVRVHTKPQSLPPSLFVVIFNPSSSLRFIHFHCRIEGCEYSV 62
          + K++N FP             PQSLPPSL  VIFNPSSSLRFIHFHCRI+GCEYSV
Sbjct: 15 ILKTINTFP-------KLAFIGPQSLPPSLLFVIFNPSSSLRFIHFHCRIKGCEYSV 64

The following BLAST results are available for this feature:
BLAST of CmaCh03G014080 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G014080 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G014080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581436.18.9e-1063.16(S)-2-hydroxy-acid oxidase GLO1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh03G014080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G014080.1CmaCh03G014080.1mRNA