CmaCh03G013980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G013980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Alpha-mannosidase 3 isoform 1
Location	Cma_Chr03: 8813625 .. 8814059 (+)
RNA-Seq Expression	CmaCh03G013980
Synteny	CmaCh03G013980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCAAGATTCAATCCCCATTCTTCCAAATCTCTCCCTCTCTCATTCTCTTCTTTCTCTTGATCTCCTCCTCCTCCTCCGCAAACCTCCTTCCCTACAGATCAGACGTACAACTCCGCCGTCACCGGACCACCCTCCACGGCGGCGCACCCACCACACCATTCTTGCTAAACTCACAGCGAGCAGTAGATCAGTACAAAGCCAACAAATTACAAATGGCGATAAAAAACAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGCTTTCTCCGCGATGCTCCCAAAGGGTTTTGTCCCTCCCTCTGGCTCGTCCCCTTGCCATAACCAAAGCCCTCAATCATCATCCCCCGCCTTTTACTGTCATCTCTCTGCTGCCACCAACCGCCCTTGA

mRNA sequence

ATGGGTTTCAAGATTCAATCCCCATTCTTCCAAATCTCTCCCTCTCTCATTCTCTTCTTTCTCTTGATCTCCTCCTCCTCCTCCGCAAACCTCCTTCCCTACAGATCAGACGTACAACTCCGCCGTCACCGGACCACCCTCCACGGCGGCGCACCCACCACACCATTCTTGCTAAACTCACAGCGAGCAGTAGATCAGTACAAAGCCAACAAATTACAAATGGCGATAAAAAACAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGCTTTCTCCGCGATGCTCCCAAAGGGTTTTGTCCCTCCCTCTGGCTCGTCCCCTTGCCATAACCAAAGCCCTCAATCATCATCCCCCGCCTTTTACTGTCATCTCTCTGCTGCCACCAACCGCCCTTGA

Coding sequence (CDS)

ATGGGTTTCAAGATTCAATCCCCATTCTTCCAAATCTCTCCCTCTCTCATTCTCTTCTTTCTCTTGATCTCCTCCTCCTCCTCCGCAAACCTCCTTCCCTACAGATCAGACGTACAACTCCGCCGTCACCGGACCACCCTCCACGGCGGCGCACCCACCACACCATTCTTGCTAAACTCACAGCGAGCAGTAGATCAGTACAAAGCCAACAAATTACAAATGGCGATAAAAAACAAGAGCAAGAAGAAAAAGAAGAAGACGACAGCCAGGTTTGAAAGCAATGGCAATAACAATAACAAGGGAAGAGCTTTCTCCGCGATGCTCCCAAAGGGTTTTGTCCCTCCCTCTGGCTCGTCCCCTTGCCATAACCAAAGCCCTCAATCATCATCCCCCGCCTTTTACTGTCATCTCTCTGCTGCCACCAACCGCCCTTGA

Protein sequence

MGFKIQSPFFQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAPTTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHLSAATNRP

Homology

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BLAST of CmaCh03G013980 vs. ExPASy TrEMBL
Match: A0A0A0KIK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 82/160 (51.25%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 1   MGFKIQSP--------FFQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAP 60
           MGFKI S         FFQIS SLILFFLL  ++SS   LP      +R   T +HG A 
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60

Query: 61  TTPFLLNSQRAVD-------QYKANKLQMAIK-NKSKKK--KKKTTA-----RFESNGNN 120
           TT      +R VD       +Y++NKL+M IK NK  KK  K+K        +  ++ N 
Sbjct: 61  TT-----LRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120

Query: 121 NNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 138
           N+KG AFSAMLPKGFVPPSGSSPCHN+ PQSSS AFYCHL
Sbjct: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

[Close]

BLAST of CmaCh03G013980 vs. ExPASy TrEMBL
Match: A0A5A7UFQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008990 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-22
Identity = 84/159 (52.83%), Postives = 99/159 (62.26%), Query Frame = 0


Query: 1   MGFKIQSP-----------FFQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHG 60
           MGFKI S            FFQIS SLILFFL+ S++SS   LP+ S+    R    +HG
Sbjct: 1   MGFKIPSSFSPYSSPNYLCFFQISLSLILFFLITSTTSSFKPLPHESNNVHHRATAVVHG 60

Query: 61  GAPTTPFLLNSQRAVD-----QYKANKLQMAIK-NK-SKKKKKK--TTARFESNGNN--N 120
            A  T       R VD     +Y++ KL+M IK NK SKK KKK      F+S+ NN  N
Sbjct: 61  SAMITTL----GREVDHHHHREYRSKKLEMEIKINKISKKMKKKGVVPGGFKSSNNNKKN 120

Query: 121 NKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 138
           +KG AFS MLPKGFVPPSGSSPCHN++PQSSS AFYCHL
Sbjct: 121 DKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHL 155

[Close]

BLAST of CmaCh03G013980 vs. ExPASy TrEMBL
Match: A0A251PHD3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G080200 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-08
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 53  TTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGF 112
           TTPF L+ Q   DQ   +K    +++K KK++KKT        N N K R FSAMLPKGF
Sbjct: 61  TTPFPLDKQ---DQ--LSKKHRKMRHKQKKRRKKT--------NKNFKSRPFSAMLPKGF 120

Query: 113 VPPSGSSPCHNQSPQSSSPAFYCHLSAATNRP 145
           VPPSGSSPCHN  P  +S  F+C L+  T +P
Sbjct: 121 VPPSGSSPCHNGYP--NSVVFFCDLAPTTAKP 137

[Close]

BLAST of CmaCh03G013980 vs. ExPASy TrEMBL
Match: A0A6P5U273 (uncharacterized protein LOC110774003 OS=Prunus avium OX=42229 GN=LOC110774003 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 13  SPSLILFFLLISSSSSANLLPYR-----SDVQLRRHRTTLHGGAPTTPFLLNSQRAVDQY 72
           SPS        SSSSS++ + ++     S     ++R        TTPF L+ Q   DQ 
Sbjct: 20  SPSSSALISSFSSSSSSHEIQHKPPSDASTATAAQYRVFYIKN--TTPFPLDKQ---DQ- 79

Query: 73  KANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSPCHNQSPQ 132
             +K    +++K KK++KKT        NNN K R FS MLPKGFVPPSGSSPCHN  P 
Sbjct: 80  -LSKKHRKMRHKQKKRRKKT--------NNNFKSRPFSVMLPKGFVPPSGSSPCHNGYP- 139

Query: 133 SSSPAFYCHLSAATNRP 145
            +S  F+C L+  T +P
Sbjct: 140 -NSVVFFCDLAPTTAKP 139

[Close]

BLAST of CmaCh03G013980 vs. ExPASy TrEMBL
Match: A0A6J5UKF6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS25544 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.5e-08
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 53  TTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGF 112
           TTPF L+ Q   DQ   +K    +++K KK++KKT        N N K R FS MLPKGF
Sbjct: 63  TTPFPLDKQ---DQ--LSKKHRKMRHKQKKRRKKT--------NKNFKSRPFSVMLPKGF 122

Query: 113 VPPSGSSPCHNQSPQSSSPAFYCHLSAATNRP 145
           VPPSGSSPCHN  P  +S  F+C L+  T +P
Sbjct: 123 VPPSGSSPCHNGYP--NSVVFFCDLAPTTAKP 139

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: KAG6581427.1 (hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.3 bits (656), Expect = 7.9e-65
Identity = 135/144 (93.75%), Postives = 135/144 (93.75%), Query Frame = 0


Query: 1   MGFKIQSPFFQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAPTTPFLLNS 60
           MGFKIQSPFFQIS SLILFFLLISSSSSA LLP RSDVQL RHRTTLHGGAPTTPFLLN 
Sbjct: 1   MGFKIQSPFFQISISLILFFLLISSSSSAKLLPSRSDVQLHRHRTTLHGGAPTTPFLLNP 60

Query: 61  QRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSP 120
           QR VDQYKANKLQMAIKNKSKK KKKTTARFESNGNNNNKG AFS MLPKGFVPPSGSSP
Sbjct: 61  QREVDQYKANKLQMAIKNKSKKNKKKTTARFESNGNNNNKGTAFSVMLPKGFVPPSGSSP 120

Query: 121 CHNQSPQSSSPAFYCHLSAATNRP 145
           CHNQSPQSSSPAFYCHLSAATNRP
Sbjct: 121 CHNQSPQSSSPAFYCHLSAATNRP 144

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: KAG7034719.1 (hypothetical protein SDJN02_04449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 74  MAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAF 133
           MAIKNKSKK KKKTTARFESNGNNNNKGRAFS MLPKGFVPPSGSSPCHNQSPQSSSPAF
Sbjct: 1   MAIKNKSKKNKKKTTARFESNGNNNNKGRAFSVMLPKGFVPPSGSSPCHNQSPQSSSPAF 60

Query: 134 YCHLSAATNRP 145
           YCHLSAATNRP
Sbjct: 61  YCHLSAATNRP 71

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: KGN49393.1 (hypothetical protein Csa_004373 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-22
Identity = 82/160 (51.25%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 1   MGFKIQSP--------FFQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGGAP 60
           MGFKI S         FFQIS SLILFFLL  ++SS   LP      +R   T +HG A 
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60

Query: 61  TTPFLLNSQRAVD-------QYKANKLQMAIK-NKSKKK--KKKTTA-----RFESNGNN 120
           TT      +R VD       +Y++NKL+M IK NK  KK  K+K        +  ++ N 
Sbjct: 61  TT-----LRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120

Query: 121 NNKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 138
           N+KG AFSAMLPKGFVPPSGSSPCHN+ PQSSS AFYCHL
Sbjct: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 155

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: KAA0052545.1 (hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK13280.1 hypothetical protein E5676_scaffold255G008990 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 4.8e-22
Identity = 84/159 (52.83%), Postives = 99/159 (62.26%), Query Frame = 0


Query: 1   MGFKIQSP-----------FFQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHG 60
           MGFKI S            FFQIS SLILFFL+ S++SS   LP+ S+    R    +HG
Sbjct: 1   MGFKIPSSFSPYSSPNYLCFFQISLSLILFFLITSTTSSFKPLPHESNNVHHRATAVVHG 60

Query: 61  GAPTTPFLLNSQRAVD-----QYKANKLQMAIK-NK-SKKKKKK--TTARFESNGNN--N 120
            A  T       R VD     +Y++ KL+M IK NK SKK KKK      F+S+ NN  N
Sbjct: 61  SAMITTL----GREVDHHHHREYRSKKLEMEIKINKISKKMKKKGVVPGGFKSSNNNKKN 120

Query: 121 NKGRAFSAMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 138
           +KG AFS MLPKGFVPPSGSSPCHN++PQSSS AFYCHL
Sbjct: 121 DKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHL 155

[Close]

BLAST of CmaCh03G013980 vs. NCBI nr
Match: KAG7026467.1 (hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-19
Identity = 80/147 (54.42%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 1   MGFKIQ---SP----FFQISPSLILFFLLISSSSSANLLPYRSDVQL-RRHRTTLHGGAP 60
           MGFKIQ   SP    +  IS SLILFFLLISSSS+  L   R ++    RHRTTLH GAP
Sbjct: 1   MGFKIQPSPSPNYLYYLSISLSLILFFLLISSSSAQPLPLRRPNLAAHHRHRTTLHVGAP 60

Query: 61  TTPFLLNSQRAVDQYKANKLQMAIKNKSKKKKKKTTARFESNGNNNNKGRAFSAMLPKGF 120
           TT F            A KLQM    ++ KKKKK            NK  AFSAMLPKGF
Sbjct: 61  TTTF-----------TAKKLQM----ETNKKKKK------------NKATAFSAMLPKGF 118

Query: 121 VPPSGSSPCHNQSPQSSSPAFYCHLSA 140
           VPPSGSSPCHN++P+    AFYCHLSA
Sbjct: 121 VPPSGSSPCHNENPE--FVAFYCHLSA 118

[Close]

BLAST of CmaCh03G013980 vs. TAIR 10
Match: AT4G18335.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 4.7e-07
Identity = 51/150 (34.00%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 10  FQISPSLILFFLLISSSSSANLLPYRSDVQLRRHRTTLHGG---------APTTPFLLNS 69
           F +S  L L FL+  SSSS+N     S  Q  +    L+G            TTPF+LN 
Sbjct: 15  FIVSLILTLVFLISPSSSSSNQETRVSSTQ--KTEAYLNGYESPHQLVYIKKTTPFILNQ 74

Query: 70  QRAVDQYKANK--------LQMAIKNKSKKKKK----KTTARFESNGNNNNKGRAFSAML 129
           +   D ++  +         +  ++++     +    K  A+  +  N   +   FS ML
Sbjct: 75  RLQRDNHRRRRYNHQYYYYYRHTLRHRRGLHHRAGYFKMMAKKNNGLNRPVRQDTFSVML 134

Query: 130 PKGFVPPSGSSPCHNQSPQSSSPAFYCHLS 139
           PKGFVPPSGSSPCHNQ+P S++  F C LS
Sbjct: 135 PKGFVPPSGSSPCHNQNPNSATTLF-CDLS 161

The following BLAST results are available for this feature:

BLAST of CmaCh03G013980 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G013980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIK1	1.4e-22	51.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1	[more]
A0A5A7UFQ9	2.3e-22	52.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A251PHD3	3.3e-08	50.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G080200 PE=4 SV=1	[more]
A0A6P5U273	5.6e-08	40.88	uncharacterized protein LOC110774003 OS=Prunus avium OX=42229 GN=LOC110774003 PE...	[more]
A0A6J5UKF6	9.5e-08	48.91	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS25544 PE=4 S...	[more]

BLAST of CmaCh03G013980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581427.1	7.9e-65	93.75	hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034719.1	1.2e-28	97.18	hypothetical protein SDJN02_04449, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN49393.1	2.8e-22	51.25	hypothetical protein Csa_004373 [Cucumis sativus]	[more]
KAA0052545.1	4.8e-22	52.83	hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK132...	[more]
KAG7026467.1	3.8e-19	54.42	hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh03G013980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18335.1	4.7e-07	34.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G013980.1	CmaCh03G013980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport