CmaCh03G013460 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G013460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSplicing factor subunit
LocationCma_Chr03: 8605869 .. 8612336 (-)
RNA-Seq ExpressionCmaCh03G013460
SyntenyCmaCh03G013460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTACCAACTACACTTGTAACCTCGTATTTATTGTCTATCATACTTCTTTATTCCGAATTTTACGTTGTGTTTCGATTTAGTTGGGCAGTAATTAGAGAGCCGGGCGACTGAGTCCAATTTGATTCTTTCGTTTCTATTTCCGCTGATTCAAGCCTAAGGAGATGATTTTATAATTTCACTTCCTGATCCTGTTCGTATTACTCAACCTTTTCGTTTTGTTCATCGGAGGCCTTCTCTGTTGCGATATTCCTGGATCCTTAATTTATGAGAGATAAGGAATTTTCTACTACTTTCTCACTGGGAATCACTCTCTCGAAGGAAAAAAGATCTACTTTTTTATTTGGGGGTTGCTTGTTTCTAGTTGCTATGCAGTTCGAGTTATATCTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTTATATTTAGGTTTAGCAGAAGGCTATATAATGCCATTCTTTCTGCTATTGAAATCATTTAAGTTTTCTGTGCAAATTGTATGCCTTGAGTAAATTTAGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAACAAGTGGTATCAGAGCCTGGTTGTGGTATTTTGGGGTATTGTGAAAGCTTGGGCATCATCGACCATTAGACGTGCTCACAATCGTGGTTATTCTCTTGAAAATCAATTTTCAAGAATAGTGTTTTTGAGTTTCATCCAGATTAATTATTGCAAATGGCAGAACCATCACGACGTGGATCGAGAGTGTGGAGTTCCAATCTTGAAGTAGAGAAATTTGATGGAACCAATAATTTTGGTGTTTGGCGAGGCGAAGTTAGCGATTTGTTGGTCATGCAAGACCTCGATGTCTCTCTCCAAGAGGAAATGCCTGAAGACATGACAGAAGCAGAATGGACGAAATTAAATCGGCAAGCCTGTGGAATTATTCGATCCTGTCTTGGCAAGGATCAGAAATATCCATTTATGAAGGTTACCATGGCGAAAGAATTATGGGACAAGCTTGAAGCGAAATATATGAAGAAGAGTGTGGAAAATAAACTCTATTTGAAGAAGAAACTCTTCCGTTTTGATTACAAGGAAGGCATCTCAATGGCTGAGCATTTGGATGATTTTAACAAAATCATCACTGATTTGCTCAATCTTGATGTTAAGATTGATGACGAGGACAAGGCGTTGTTGTTATTAAACTCCTTGCCGGAATCCTACGAGTTTTTAGTAACGACCCTACTACATGGAATTACTGATATTGATTTTGAAGATGTTTCAAATGCCTTAATAAACAATGAGATGCGAAAGAAGGAAAAGGAGACGTATCAAAGCTCTAGCTCAAATGTTCTCACTGCTCATGGAAGGACTTCCAATTGGAAAAAGAACGAATGTGGAGAGTCTCGATTAAAGTCGAGAGGTAGATCTGATAATTGGAGAAAACTTGATAAAAATGAGTGTGCATATTGTCGACAGAAAGGCCATTGGAAAAAGGATTGTCCGATCTTAAAAGAGAAGGGGTCGAAGTCCAATGTGGTTAGAGATGACGACATTGATACGGATGATGCCTTGACAATCTCCCAATCAGTCAGCCAAACCAGTGAATGGATTCTTGATTCTGGGTGCTCCTATCATATGTGTCCCAACAAAGAGATGTTTTTGGACTTCAAGGAGTTCAATGGTGGAGTTGTCTATATGGGAAATGATAGTACTTGTAAGATAATGGGAATCGGCTCAGTACAAATCAAGATGTTTGATGGGGTTATACGAAAACTCAAAGATGTGAGGTATGTCCCTGACTTGAAGAAAAATTTGATTTCACTTGGCGTTTTGGATGCGAGTGGTTATCGCATCATTTTGGAAGGAGGGAATTTGAAAGTAGCTCGTGGAGCTTTGGTGGCAATTACAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGGGCATGCTGCTGTGGCAAGTTCGAAAGAACAAGACATATCGAAATTATGGCACATGCGACTCGGGCATGCTGGTGAGAAGGCGCTTCAGACACTGGTGAACCAAGGAGTCCTTAAGGGTGCCACAACTGGAAGAATTGATTTCTGTGAACATTGTATATTTGGCAAACAAAAAAATGTGAAGTTTGGTACAGCTATACACCAAACAAAGGGCATTTTGGATTATGTTCACACTGATGTATGGGGTCCCACAAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTCGTCACCTTTATTGATGACTACTCGAAGAGAGTTTGGATGTATCCCATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCTAGAGTGGAAGAAAATGGTAGAGAATCAGACGGACAAGAAAATCAAAAGGCTGAGATCAGACAACGGGGGAGAATATACTTATGATCCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGATGCATATTGTCTCAAGCAGGATTGAGTAAGGCATTTTGGGCTGAGGCTCTCAGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGGAAACGGTGGGAGAACTCCGCTTGAGGTATGGTCAGGTAGTCCTGTTAGTGATTATGATAAATTACATGTGTTTGGGTGTCCTGCTTATTATCATGTGACAGACTCAAAGCTGGATCCTAGAGCAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGTGTGAAGGGCTATAGGTTATGGTGTCCAGAAACAAGTAAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAGGTGGTGTTCTCTCCTGATGTGGTTGCTCCTACTGAAGAACCTATTGACCAGGTAAATAATAACTTTGATGTCTTAGAACAGAAAGAGCAAAGACTTGAGGAGCAAAGCCTTGTAAATGAAAGAGTGGAGGAACCTGAGTCAATCGCCAAGAATAGACCACGAAGGGTAATTCGAAAACCTGCAAGGTTTGATGATACGATAGCATATGCTTTCTCTTTGATTGATGGAGTTCCTAACAGTTACAAAGATGCTATTCAGAGCCCGGATAGCTTACACTGGCAAGAGGCTGTGAATCAGGAGATAGCATCATTGGAGATAAATCAAACTTGGGATTTGGTACAACTTCCAAAAGGTAAGAAGGAAATTGGTTGTAAATGGGTTTTTGCAAAAAAGGAAGACCCTTTTGGTATACGTTATAAGGCTCGACTTGTGGCTAAAGGCTACGCACAAAAGGAAGGTATTGATTACAATGAAATTTTCTCACCTGTGGTAAAACATTCTTCGATTCGAATTTTGTTGGCTTTGGTTGCTCAATTTAATCTTGAGCTTGCACAACTCGATGTAAAAACTGCTTTTTTGCATGGAGATTTGGAAGAAGAAATATATATGACGCAACCAGTTGGTTTCCGAGTAGTTGGACAGCAACATTTAGTATGCAGATTGAAGAAATCTTTGTATGGGCTGAAGCAATCCCCTCGCCAATGGTATAAAAGGTTTGATCATTTCATGGTAGAGCATATGTATACTNATAGTCAATTTGACCATTGTGTGTATTATCGATGTCTCGATGATGGATCGTTTATCTACTTGCTCTTATATGTTGATGATATGTTAATTGCTTCAAAGAGACAGGTGGAGATTGATAAACTCAAAGATGAGCTTTCTAAAACATTTGAAATGAAAGACTTAGGCAATGCGAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTACAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATAATTCAACCAAACCTGTTAGTACTCCACTTGCTCCTCATTTCAAGCTTAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGATATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACCTGATCTTTCACACGCAGTAAGCATGGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGGTTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCCACCACGGGTTATTTATTTACTATGGCTGGTGGACCTGTTTGTTGGCGCTCAACATTGCAGTCTACTGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCGGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGCCAGAGCGCTATTTGCTTGTCAAAAAATCAAGTCCATCATGCTCGTACAAAACACATTGATGTCCGTTTTCACTTTATTCGAGAAATCATTAGCAAAGGGGATATTCGTTTACTAAAAATTGGAACTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGGAAGGAAGGAGTAGTGTGTTGATGTGGGAGCAACCAAATTCACTATCAACTTGGAAATCTTATGACAAGGTGGAGATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTTATATTTAGGTTTAGCAGAAGGCTATATAATGCCATTCTTTCTGCTGTTGAAATCATTTAAGTTTTCTGTGCAAATTGTATGCCTTGAGTAAATTTAGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAACAATATCATTCTGCTGCAGCCTGCAAATGAGCTCTGCACGAAGCGAGTGACGATATTATGTTGAGTCTTGAATTACTATTGTGTTGGTTAGTGTAATATGTGGATGTCAAACCTCTTAATCAGTAATCCATCTTTGAAATTTGAGATTGATTGTGGATTCCTGTCACTGCTCGCTGGAGGTTGGTTTAGATGGACACGAGGCGCTAATGTTGGTTTTTGATTGGGATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAAGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTGTTAGTTTTGTATTCCTTCTTGTGTGTTGATCTTATTATATTGCTTTGCATATTAGTTTTGATGTCTAAATTCAGATGTTGGTGTGTACAGTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCCGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGGTCAATAACTTCTTCTTTCTTTATGATTATTACCCCTTTAACTTGCCTTCCTCCCATGAACATGAGAGTTTCAAGTCCTATTATATGATTTACGAGTAATTGCTCCATCCATGTATATGAATTGTTTGTTATCTTCACTTGAACCCCTCTGCGTGCTGTAATCTAAACTGGGTTTGTGCTGCTTTTGTGTTTCGAAATGTGGGGTTAAACCCATTATGTTTGTAACTAGCATTTCATTCTTAATGAGGGATAGCAAAACTTCATCATATATCCTCCTGGATATCATTTTGGACATAGTTAGATACCTAATGGGTTGTTTTTCTTCTTTTTCTTTTCCTCTTTGCAGAAAATGTTGTTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTAATTATATAAGTAATTGAAGTTGTTAAGATTGCAAAAACGGTCAGTCATTGTAGGGTTGATGAATTTCTTGTTTATGAACCAACGATGGTAAGATTTTCTTGGATATTGAAATTTTCTGTATGATTTCAATATATGAGTCTTCTAATAGACTTCTAGATTTTAAAATGTGTCGGGAACGGACGAAGGCCAAACTCGAAAGCTCAGGTAAAGACGCTAGTGCTTTCGTTTTCTTGCCAACGTTGATCCTATTTGGCTTCTAGTACTTTCTATTCCTCTTTTCTATTCCTCTTAAATAAGGTAATAGCTGACTTCAGATTTTAAAATGTTCCCAATGGATTTTTTTAATTTTTTAAAAAATATTTAATAGTTTCTTAAGCTTTTCTCTGTGTTTGATATTTTGGTCTATTCCACAATTTTTATATTTTACCTACC

mRNA sequence

ATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAAGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCCGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGTTGTTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTAATTATATAAGTAATTGAAGTTGTTAAGATTGCAAAAACGGTCAGTCATTGTAGGGTTGATGAATTTCTTGTTTATGAACCAACGATGGTAAGATTTTCTTGGATATTGAAATTTTCTGTATGATTTCAATATATGAGTCTTCTAATAGACTTCTAGATTTTAAAATGTGTCGGGAACGGACGAAGGCCAAACTCGAAAGCTCAGGTAAAGACGCTAGTGCTTTCGTTTTCTTGCCAACGTTGATCCTATTTGGCTTCTAGTACTTTCTATTCCTCTTTTCTATTCCTCTTAAATAAGGTAATAGCTGACTTCAGATTTTAAAATGTTCCCAATGGATTTTTTTAATTTTTTAAAAAATATTTAATAGTTTCTTAAGCTTTTCTCTGTGTTTGATATTTTGGTCTATTCCACAATTTTTATATTTTACCTACC

Coding sequence (CDS)

ATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAAGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCCGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGTTGTTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
Homology
[Close]
BLAST of CmaCh03G013460 vs. ExPASy Swiss-Prot
Match: Q9LW64 (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of CmaCh03G013460 vs. ExPASy Swiss-Prot
Match: P58728 (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]
BLAST of CmaCh03G013460 vs. ExPASy Swiss-Prot
Match: Q9VHI4 (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 RERYNFMQKMLLPCGLPPEREDD 88
          R R+N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]
BLAST of CmaCh03G013460 vs. ExPASy Swiss-Prot
Match: Q56K13 (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of CmaCh03G013460 vs. ExPASy Swiss-Prot
Match: Q9BWJ5 (Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of CmaCh03G013460 vs. ExPASy TrEMBL
Match: A0A6J1IBJ4 (Splicing factor subunit OS=Cucurbita maxima OX=3661 GN=LOC111473181 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. ExPASy TrEMBL
Match: A0A218VSR0 (Splicing factor subunit OS=Punica granatum OX=22663 GN=LOC116191992 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. ExPASy TrEMBL
Match: A0A6J1EJ56 (Splicing factor subunit OS=Cucurbita moschata OX=3662 GN=LOC111433082 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. ExPASy TrEMBL
Match: A0A6P4A3S7 (Splicing factor subunit OS=Ziziphus jujuba OX=326968 GN=LOC107422867 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. ExPASy TrEMBL
Match: A0A5A7UDP6 (Splicing factor subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002040 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.0e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: XP_031271203.1 (uncharacterized protein At4g14342 isoform X1 [Pistacia vera] >XP_031271217.1 uncharacterized protein At4g14342 [Pistacia vera])

HSP 1 Score: 186.8 bits (473), Expect = 7.9e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 49  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 108

Query: 61  ESIGRERYNFMQKMLLPCGLPPEREDD 88
           ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 109 ESIGRERYNFMQKMLLPCGLPPEREDD 135

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: XP_015887858.1 (uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022925775.1 uncharacterized protein At4g14342 [Cucurbita moschata] >XP_022947444.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita moschata] >XP_022947450.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita moschata] >XP_022974505.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita maxima] >XP_022974506.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita maxima] >XP_022978791.1 uncharacterized protein At4g14342 [Cucurbita maxima] >XP_023521267.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023539132.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023543147.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023919041.1 uncharacterized protein At4g14342 [Quercus suber] >XP_023919042.1 uncharacterized protein At4g14342 [Quercus suber] >XP_030550068.1 uncharacterized protein At4g14342 [Rhodamnia argentea] >XP_030550069.1 uncharacterized protein At4g14342 [Rhodamnia argentea] >XP_030923579.1 uncharacterized protein At4g14342 [Quercus lobata] >XP_031376227.1 uncharacterized protein At4g14342 isoform X2 [Punica granatum] >XP_031376228.1 uncharacterized protein At4g14342 isoform X3 [Punica granatum] >XP_031377923.1 uncharacterized protein At4g14342 isoform X1 [Punica granatum] >XP_031377924.1 uncharacterized protein At4g14342 isoform X2 [Punica granatum] >XP_038892844.1 uncharacterized protein At4g14342 isoform X1 [Benincasa hispida] >KAF3968442.1 hypothetical protein CMV_007664 [Castanea mollissima] >KAG6581380.1 hypothetical protein SDJN03_21382, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028825.1 hypothetical protein SDJN02_10007 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6597361.1 hypothetical protein SDJN03_10541, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034664.1 hypothetical protein SDJN02_04394, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 7.9e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: XP_021593515.1 (uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacterized protein At4g14342 isoform X1 [Hevea brasiliensis] >XP_021640396.1 uncharacterized protein At4g14342 isoform X2 [Hevea brasiliensis] >KAF2313992.1 hypothetical protein GH714_021376 [Hevea brasiliensis] >KAG8636795.1 hypothetical protein MANES_15G041801v8 [Manihot esculenta])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: XP_038719409.1 (uncharacterized protein At4g14342 [Tripterygium wilfordii] >KAF5738559.1 splicing factor 3b subunit [Tripterygium wilfordii])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPVLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: XP_004134645.1 (uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 PREDICTED: uncharacterized protein At4g14342 isoform X1 [Cucumis melo] >ADN34023.1 splicing factor 3b subunit [Cucumis melo subsp. melo] >KAA0052597.1 uncharacterized protein E6C27_scaffold120G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. TAIR 10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of CmaCh03G013460 vs. TAIR 10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-45
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

The following BLAST results are available for this feature:
BLAST of CmaCh03G013460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LW642.2e-4493.10Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P... [more]
P587282.2e-4493.10Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P... [more]
Q9VHI42.2e-2866.27Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV... [more]
Q56K139.1e-2760.71Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1[more]
Q9BWJ59.1e-2760.71Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1[more]
BLAST of CmaCh03G013460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IBJ43.8e-44100.00Splicing factor subunit OS=Cucurbita maxima OX=3661 GN=LOC111473181 PE=3 SV=1[more]
A0A218VSR03.8e-44100.00Splicing factor subunit OS=Punica granatum OX=22663 GN=LOC116191992 PE=3 SV=1[more]
A0A6J1EJ563.8e-44100.00Splicing factor subunit OS=Cucurbita moschata OX=3662 GN=LOC111433082 PE=3 SV=1[more]
A0A6P4A3S73.8e-44100.00Splicing factor subunit OS=Ziziphus jujuba OX=326968 GN=LOC107422867 PE=3 SV=1[more]
A0A5A7UDP65.0e-4498.85Splicing factor subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CmaCh03G013460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031271203.17.9e-44100.00uncharacterized protein At4g14342 isoform X1 [Pistacia vera] >XP_031271217.1 unc... [more]
XP_015887858.17.9e-44100.00uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022925775.1 uncharacteri... [more]
XP_021593515.11.0e-4398.85uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacte... [more]
XP_038719409.11.0e-4398.85uncharacterized protein At4g14342 [Tripterygium wilfordii] >KAF5738559.1 splicin... [more]
XP_004134645.11.0e-4398.85uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 PREDICTED: u... [more]
BLAST of CmaCh03G013460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G23325.11.5e-4593.10Splicing factor 3B subunit 5/RDS3 complex subunit 10 [more]
AT4G14342.11.5e-4593.10Splicing factor 3B subunit 5/RDS3 complex subunit 10 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017089Splicing factor 3B, subunit 5PIRSFPIRSF037010SF3B5coord: 1..87
e-value: 1.1E-39
score: 132.4
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 5..82
e-value: 1.3E-36
score: 124.5
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978SPLICING FACTOR 3B SUBUNIT 5coord: 2..74
NoneNo IPR availablePANTHERPTHR20978:SF3SPLICING FACTOR SUBUNITcoord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G013460.1CmaCh03G013460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005686 U2 snRNP