CmaCh03G013410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G013410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 8591541 .. 8594116 (+)
RNA-Seq Expression	CmaCh03G013410
Synteny	CmaCh03G013410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAAGCTCTGGGCATTGAGATTCTGGGTTTAGCTTGTAGAGAAGAAGAGGGGGTTTCAGAAATTCCGGCGAGGTGCATGCAAATGCATAGTGTGCAAGAAAATAAAGGAAAGCCCCCACAAGCCGAAAACAATAACGTCTATGTCTGTGTAGGAAGGCATAAGACAAGAGACATGTGATGGGTCTGAGATGAGATTTTGATGGGATACAGAGAATCCAAGAAGCCACACATCAACAAAAATGTACTATATTCTAAACAAACATATGGGCCATGTGGAGGACGCATTCCCAAACTATCCTTTTCCATTCTCATCCTAACCCTTCACGTTTACAATGTCATTTGTAATTGTCCAAATTTGTATGGTCTTGGAGGGAGAGGTTTCTACACCCTTATAAAAAAATACTATGTTTCTATATTTTTGAGAGTTGATAAAAAAAGAAAAGTAAAGATGTATGCTTTTTAAGTAGGTATTAGAAAATTTACATTTGACTAAACAAAGGCATACTTTAAACGTTGATAAACCAAATTTAATTTGTAGTTTAGCTAAAGAAGCAAATAAATTTGTAGTTTAGCAAAAAAAGCCAAGTATGATAGAGAAATTAAAAGGCATTGAATTCCAAGACGAGAGACATTAATACGAGGTAGGGAAAAATGGGAAACTGTGCACGACATGGAAATTGCAAAGAATGGGCTAAATTGCAAAATAGTCCTTTCTTCAAACTTCGCCATTTCTTGCCTTAAAAAAAAAAATGTATATGTGGGAGAGATTTTATCTTTCCCCTGCTACTTTTTTTTGAAGGTCTATCGTTCTCGCTAATACTCCGTTCAGTGTCAGACTCTAATACCATTTGTAACACTTCAAACTCACCACTAACAAATATTGTTCGTTGTGATCCATTACATATCTTAGTCAGCTTCACAATTTTTAAAACGTATGTATTAAGTAGAGGTTTCCACACTTGAGATCTCACCTATAATTTTAGATAAAAGTTAACATTTTACTTCAAGAATGAAGAATACAAGGACTTTATTTATTTATTATATAAAATTGAGAAGCAAGTTTTATAATTCAGGCTTAAAAAAAAAAAAAAAAAAAAAGAAGATAAATGGGAGTGGACAGGGTTTGTTTCATGTGTTTGGCTTTGGGGATTCTGAGACATGCTCCTTGTGCATGGGCCACCCTTCCCCTTTTGTCCACTGTTACCCCACACCACCACACCACCACGCACCCTTCTACCCATTAACTCACCATACTCTTATTTAACTCGTAGCTTCGAGTACAAAACACATTTAAGCTTGCTACAAACGTACATTCAACGCTTATAGTGTTGGATAAACTTCTCATACAAGTTACAAAAAAAGAAAAAAATTTATAAAGTTGGACATTTACGTCACAGGTAATTAAAATTTCAGAATAAGAGAGCTGTCTGTGTTAGGAGCAAGAGAAGTGGGGAAGCGGCCAAAAATTTAAAATATGGACCAACGGTATAAAATCTTGGGTCAGCGTGCGTAAATAAGGTAAACGTTGGGGACAATAATTTACTGAAATTGAACCATATAATTTATTAAAATCAGCGGTGGGTTTTGGATATTTAGCCTTTCACTTTCCCGTAGTTGGTACGAAAGGGACGGCGGTGGCGGTACAAAGGGGCTAATTTTCCAAATTAAAATTAACCTTTTTTCTTTTATTGTTATTGCTCAACAAAAAAGTAAATAATTACTATAATTGAAAACAATTTAAATTTATATATTGTAATTATTATTATTATTTTTTTTTTGATGTAAAGGGCTATTTTGGGGTCTGGAACGGACACATGGATTCGTTGCTGACGTGTCAACGGGTGCGAGAGGTGACCTGGGAATCTGCCTTTAACAGATCTCACCCCATACTTCAACCAACCCCTCTTCTTCTTCACTTCCCACTCTCTTACACTCTTTTGCTTCTCTCTCTTGTTTCTCTCTCTAGCGGAGTTTTCTGTGTTTGCGACTGGGATATCGCTTTTGGGTGGAAGGGGACCTCGTGAGCTTCATGGGAAGCTTGCTGAGAGATCTGGGCTTTTAATTTTTCAAGTGGCAGACGGGATTCTGCTTTTCCTCTCTTCTGATTCAGGTGATTCCTCTTCTCTTTCCTTTTGCTTTTTGCGTCTTCCCCAACAGTTTGGCTTTAACCTACCCTTTGTGTTTTCCTTTTCAATATCCTCTCTATCTTCTTTCGCTTTCCTCCTCATTTTGTCTCTTCCGTTTTGACAGAGACTGACCGCAATTTCTTCTTAGGGGTTCCAGGGGGACTGCTAGTCAGGTTTTGATTCTCGCAGTTTTTCGAAAGATGGGTTCCTTTTTCTCTTCCCCTGTTCCGGGATTTGCTTGCTGAAGCTGGATTGAGCTTGTCGCAATATGCATTGGAGTTTGCTCGTTGCTGCTAATTAAGATTCGGTTTGAGTAGCATTTGGTATTGCTGCTAATTCAGCTTGAATCTTTAGTTACAAGCTTCATGGTTTGCTCGACCCTGGTTTCTGGTGCTTCGGCGATGGATTTTCTTTTTGTCTCATTTTATACTTGGCGGAAAGTTGA

mRNA sequence

ATGGGTCAAGCTCTGGGCATTGAGATTCTGGGTTTAGCTTGTAGAGAAGAAGAGGGGGTTTCAGAAATTCCGGCGAGGTGCATGCAAATGCATACGGAGTTTTCTGTGTTTGCGACTGGGATATCGCTTTTGGGTGGAAGGGGACCTCGTGAGCTTCATGGGAAGCTTGCTGAGAGATCTGGGCTTTTAATTTTTCAAGTGGCAGACGGGATTCTGCTTTTCCTCTCTTCTGATTCAGGGGTTCCAGGGGGACTGCTAGTCAGTTACAAGCTTCATGGTTTGCTCGACCCTGGTTTCTGGTGCTTCGGCGATGGATTTTCTTTTTGTCTCATTTTATACTTGGCGGAAAGTTGA

Coding sequence (CDS)

ATGGGTCAAGCTCTGGGCATTGAGATTCTGGGTTTAGCTTGTAGAGAAGAAGAGGGGGTTTCAGAAATTCCGGCGAGGTGCATGCAAATGCATACGGAGTTTTCTGTGTTTGCGACTGGGATATCGCTTTTGGGTGGAAGGGGACCTCGTGAGCTTCATGGGAAGCTTGCTGAGAGATCTGGGCTTTTAATTTTTCAAGTGGCAGACGGGATTCTGCTTTTCCTCTCTTCTGATTCAGGGGTTCCAGGGGGACTGCTAGTCAGTTACAAGCTTCATGGTTTGCTCGACCCTGGTTTCTGGTGCTTCGGCGATGGATTTTCTTTTTGTCTCATTTTATACTTGGCGGAAAGTTGA

Protein sequence

MGQALGIEILGLACREEEGVSEIPARCMQMHTEFSVFATGISLLGGRGPRELHGKLAERSGLLIFQVADGILLFLSSDSGVPGGLLVSYKLHGLLDPGFWCFGDGFSFCLILYLAES

Homology

[Close]

BLAST of CmaCh03G013410 vs. NCBI nr
Match: KAG6581377.1 (Protein STICHEL-like 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 61/95 (64.21%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 1  MGQALGIEILGLACREEEGVSEIPARCMQMHTEFSVFATGISLLGGRGPRELHGKLAERS 60
          MGQ LGIEILGL CREEEGVSEI A                     RGPRELHGKLAERS
Sbjct: 1  MGQVLGIEILGLGCREEEGVSEIQA---------------------RGPRELHGKLAERS 60

Query: 61 GLLIFQVADGILLFLSSDS--------GVPGGLLV 88
          GLLIFQVADGILLFLSSDS        G+PGGL V
Sbjct: 61 GLLIFQVADGILLFLSSDSETDRDFFLGIPGGLRV 74

[Close]

BLAST of CmaCh03G013410 vs. NCBI nr
Match: KAG7034662.1 (Protein STICHEL-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 27 CMQMHTEFSVFATGISLLGGRGPRELHGKLAERSGLLIFQVADGILLFLSSDS------- 86
          C  ++  F     G+SLLGGRGPRELHGKLAERSGLLIFQVADGILLFLSSDS       
Sbjct: 22 CFSLYRSFLCLRLGLSLLGGRGPRELHGKLAERSGLLIFQVADGILLFLSSDSETDRDFF 81

Query: 87 -GVPGGLLV 88
           G+PGGL V
Sbjct: 82 LGIPGGLRV 90

The following BLAST results are available for this feature:

BLAST of CmaCh03G013410 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G013410 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G013410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581377.1	1.5e-18	64.21	Protein STICHEL-like 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7034662.1	4.6e-15	68.12	Protein STICHEL-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmaCh03G013410 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G013410.1	CmaCh03G013410.1	mRNA