CmaCh03G012860 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G012860
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionGlycogen phosphorylase 1-like
LocationCma_Chr03: 8366741 .. 8367229 (-)
RNA-Seq ExpressionCmaCh03G012860
SyntenyCmaCh03G012860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTTCCAGTGAAAAAGATTATGGAAGACGCACCGTGGACTCAAAAGCTTGAAGCCCTAACGCATATTCTGCTGTGCCCCACCACCGCTCCGCCGCTTGCGTCTCAGTTCTTCATCGCCACCAAGATCCCCTGCTACCTGAATTGGGACTACCCGCCGCTCCTCTGCTCCAAACCTTCTATTTTCCCCTTTCCCTCTCTTCACCTTCAATGGGGCTTCTCTCTGTTCCTCAAAAGACTCTCCCGATTGGGGCTCCCCATGACCTCTTGGCGATCCAAATGCCCTTATCAACTCCCCCCGCCGTTGCTTCTCGCTCGAGGCGTCGACGGCGCTCAGTGGGACGATGAACAGAGGAGAAACTACGTGAGAATGAGGCTGAGAAGAAAGCGTCTGGGCAGCGATGTCAACCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTGTCTTCTGCTATGGAAGCCATTATCTTCCACTCATTAA

mRNA sequence

ATGTTCGTTCCAGTGAAAAAGATTATGGAAGACGCACCGTGGACTCAAAAGCTTGAAGCCCTAACGCATATTCTGCTGTGCCCCACCACCGCTCCGCCGCTTGCGTCTCAGTTCTTCATCGCCACCAAGATCCCCTGCTACCTGAATTGGGACTACCCGCCGCTCCTCTGCTCCAAACCTTCTATTTTCCCCTTTCCCTCTCTTCACCTTCAATGGGGCTTCTCTCTGTTCCTCAAAAGACTCTCCCGATTGGGGCTCCCCATGACCTCTTGGCGATCCAAATGCCCTTATCAACTCCCCCCGCCGTTGCTTCTCGCTCGAGGCGTCGACGGCGCTCAGTGGGACGATGAACAGAGGAGAAACTACGTGAGAATGAGGCTGAGAAGAAAGCGTCTGGGCAGCGATGTCAACCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTGTCTTCTGCTATGGAAGCCATTATCTTCCACTCATTAA

Coding sequence (CDS)

ATGTTCGTTCCAGTGAAAAAGATTATGGAAGACGCACCGTGGACTCAAAAGCTTGAAGCCCTAACGCATATTCTGCTGTGCCCCACCACCGCTCCGCCGCTTGCGTCTCAGTTCTTCATCGCCACCAAGATCCCCTGCTACCTGAATTGGGACTACCCGCCGCTCCTCTGCTCCAAACCTTCTATTTTCCCCTTTCCCTCTCTTCACCTTCAATGGGGCTTCTCTCTGTTCCTCAAAAGACTCTCCCGATTGGGGCTCCCCATGACCTCTTGGCGATCCAAATGCCCTTATCAACTCCCCCCGCCGTTGCTTCTCGCTCGAGGCGTCGACGGCGCTCAGTGGGACGATGAACAGAGGAGAAACTACGTGAGAATGAGGCTGAGAAGAAAGCGTCTGGGCAGCGATGTCAACCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTGTCTTCTGCTATGGAAGCCATTATCTTCCACTCATTAA

Protein sequence

MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH
Homology
BLAST of CmaCh03G012860 vs. ExPASy TrEMBL
Match: A0A6J1IR68 (uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 7.0e-92
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0

Query: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
           MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP
Sbjct: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60

Query: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
           SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR
Sbjct: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120

Query: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 163
           NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH
Sbjct: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 162

BLAST of CmaCh03G012860 vs. ExPASy TrEMBL
Match: A0A0A0KK88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.2e-76
Identity = 136/161 (84.47%), Postives = 146/161 (90.68%), Query Frame = 0

Query: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
           + +P+K+ ME+APW QKL+ALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLC K 
Sbjct: 4   ILLPMKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKS 63

Query: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
           SIFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV  AQWDDEQR 
Sbjct: 64  SIFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRI 123

Query: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSST 162
           NY RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLW P SST
Sbjct: 124 NYARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164

BLAST of CmaCh03G012860 vs. ExPASy TrEMBL
Match: A0A1S3B097 (uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 134/161 (83.23%), Postives = 144/161 (89.44%), Query Frame = 0

Query: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
           + + +KK ME+ PW+QKL+ALTHILLCP TAPPLASQFFIATKIPCYLNWDYPPLLC K 
Sbjct: 4   ILLSMKKTMEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKS 63

Query: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
           SIFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV  AQWDDEQR 
Sbjct: 64  SIFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRI 123

Query: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSST 162
           NY RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLW P SST
Sbjct: 124 NYARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164

BLAST of CmaCh03G012860 vs. ExPASy TrEMBL
Match: A0A6J1EGM1 (uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC111433914 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.6e-74
Identity = 131/153 (85.62%), Postives = 141/153 (92.16%), Query Frame = 0

Query: 9   MEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 68
           ME++PW QKL+ LTHILLCPTTAPPLASQ+F+ATKIPCYLNWDYPPLLC KPSIFPFPSL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60

Query: 69  HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRLR 128
           HLQWGFSLFLKRLSR  LP TSWRSKCP+Q PPPL+LA+GVD AQW DEQRR YVRMRLR
Sbjct: 61  HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120

Query: 129 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSST 162
           RKRLGSDV+PLIPI+IPNMLLF LLLW PLSST
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSST 153

BLAST of CmaCh03G012860 vs. ExPASy TrEMBL
Match: A0A5A7UDV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007700 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.3e-73
Identity = 132/153 (86.27%), Postives = 139/153 (90.85%), Query Frame = 0

Query: 9   MEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 68
           ME+ PW+QKL+ALTHILLCP TAPPLASQFFIATKIPCYLNWDYPPLLC K SIFPF SL
Sbjct: 1   MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60

Query: 69  HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRLR 128
           HLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV  AQWDDEQR NY RMRLR
Sbjct: 61  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120

Query: 129 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSST 162
           RKRLGSDV+PLIPIMIPNMLLF LLLW P SST
Sbjct: 121 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 153

BLAST of CmaCh03G012860 vs. NCBI nr
Match: XP_022978775.1 (uncharacterized protein LOC111478635 [Cucurbita maxima])

HSP 1 Score: 346.3 bits (887), Expect = 1.4e-91
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0

Query: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
           MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP
Sbjct: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60

Query: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
           SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR
Sbjct: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120

Query: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 163
           NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH
Sbjct: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 162

BLAST of CmaCh03G012860 vs. NCBI nr
Match: KAG6604466.1 (hypothetical protein SDJN03_05075, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034610.1 hypothetical protein SDJN02_04340, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.5 bits (820), Expect = 8.5e-84
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 0

Query: 9   MEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 68
           MEDAPWT+KLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL
Sbjct: 1   MEDAPWTEKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 60

Query: 69  HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRLR 128
           HLQWGFSLFLKRLSRLGLP+TSWRSKCPYQLPPPLLLA+GVD AQWDDEQRR YVR+RLR
Sbjct: 61  HLQWGFSLFLKRLSRLGLPVTSWRSKCPYQLPPPLLLAQGVDAAQWDDEQRRKYVRIRLR 120

Query: 129 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 163
           RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH
Sbjct: 121 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSSTH 154

BLAST of CmaCh03G012860 vs. NCBI nr
Match: XP_004134687.2 (uncharacterized protein LOC101221431 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 1.9e-75
Identity = 136/161 (84.47%), Postives = 146/161 (90.68%), Query Frame = 0

Query: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
           + +P+K+ ME+APW QKL+ALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLC K 
Sbjct: 4   ILLPMKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKS 63

Query: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
           SIFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV  AQWDDEQR 
Sbjct: 64  SIFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRI 123

Query: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSST 162
           NY RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLW P SST
Sbjct: 124 NYARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164

BLAST of CmaCh03G012860 vs. NCBI nr
Match: XP_008439813.1 (PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 134/161 (83.23%), Postives = 144/161 (89.44%), Query Frame = 0

Query: 1   MFVPVKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKP 60
           + + +KK ME+ PW+QKL+ALTHILLCP TAPPLASQFFIATKIPCYLNWDYPPLLC K 
Sbjct: 4   ILLSMKKTMEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKS 63

Query: 61  SIFPFPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRR 120
           SIFPF SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV  AQWDDEQR 
Sbjct: 64  SIFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRI 123

Query: 121 NYVRMRLRRKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSST 162
           NY RMRLRRKRLGSDV+PLIPIMIPNMLLF LLLW P SST
Sbjct: 124 NYARMRLRRKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSST 164

BLAST of CmaCh03G012860 vs. NCBI nr
Match: XP_022926954.1 (uncharacterized protein LOC111433914 [Cucurbita moschata])

HSP 1 Score: 286.6 bits (732), Expect = 1.4e-73
Identity = 131/153 (85.62%), Postives = 141/153 (92.16%), Query Frame = 0

Query: 9   MEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 68
           ME++PW QKL+ LTHILLCPTTAPPLASQ+F+ATKIPCYLNWDYPPLLC KPSIFPFPSL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60

Query: 69  HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRLR 128
           HLQWGFSLFLKRLSR  LP TSWRSKCP+Q PPPL+LA+GVD AQW DEQRR YVRMRLR
Sbjct: 61  HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120

Query: 129 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSST 162
           RKRLGSDV+PLIPI+IPNMLLF LLLW PLSST
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSST 153

BLAST of CmaCh03G012860 vs. TAIR 10
Match: AT2G33855.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 3.3e-41
Identity = 81/151 (53.64%), Postives = 102/151 (67.55%), Query Frame = 0

Query: 9   MEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 68
           ME+  W Q+++A+THIL  PTT P L SQFFI   IP Y++WDYPP+         +   
Sbjct: 1   MEETTWGQRIQAVTHILTNPTTKPSLYSQFFIGAIIPNYVSWDYPPV---------YSPT 60

Query: 69  HL-QWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRL 128
           HL QW  S F KR+SR GLP TSWRS  PY  PP  ++A GV+  +W  E+RR Y R RL
Sbjct: 61  HLRQWWVSQFFKRVSRFGLPDTSWRSNSPYYQPPAAVMAVGVEEGKWGKEERREYARKRL 120

Query: 129 RRKRLGSDVNPLIPIMIPNMLLFCLLLWKPL 159
           RRKRL ++VNP IP+++PN+LLF LLLW PL
Sbjct: 121 RRKRLVNEVNPYIPLLVPNLLLFTLLLWDPL 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IR687.0e-92100.00uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635... [more]
A0A0A0KK889.2e-7684.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1[more]
A0A1S3B0972.3e-7483.23uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=... [more]
A0A6J1EGM16.6e-7485.62uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC1114339... [more]
A0A5A7UDV04.3e-7386.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_022978775.11.4e-91100.00uncharacterized protein LOC111478635 [Cucurbita maxima][more]
KAG6604466.18.5e-8496.10hypothetical protein SDJN03_05075, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004134687.21.9e-7584.47uncharacterized protein LOC101221431 [Cucumis sativus][more]
XP_008439813.14.7e-7483.23PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo][more]
XP_022926954.11.4e-7385.62uncharacterized protein LOC111433914 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G33855.13.3e-4153.64unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38364OSJNBA0022H21.9 PROTEINcoord: 11..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G012860.1CmaCh03G012860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane