CmaCh03G012820 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G012820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein FRIGIDA-ESSENTIAL 1 isoform X2
LocationCma_Chr03: 8347231 .. 8349787 (-)
RNA-Seq ExpressionCmaCh03G012820
SyntenyCmaCh03G012820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATATTATTATATTTGTTTTGGTTATAAAAATAATAAATGAAACGTAGAAAGGGAAAAGGAAAAGGAGTCAATAGAATTGCAGGCGGCGGAAGATTAATGCGGGAGAAATATGCTTATGGAGATTAGGTCCGCCGCACTCATAATATTGTACGTATTATTATTATTATTATTATTATTATTATTATTATTAAATTGGTAAAATAAAATCCAAATAATGGGAAATTAAATGTTCAAACTTGGGGCAGGAGCAACGTACGGCGCGGGGTGAGGGCTGAGAACGTGTTGACGTGTTGGACACAGACAGACAGATGGTCACACCGGCAACTTGGCGTGTTCGGCCGGCAGTGGACCCCACCACCTTCTTTATTTATTTATTATTATTAAAAATATATATAAAAGCGGCCGAAATGTGAGAGATGCCTTATGTCTATGATGTGCCACGTTTGGCACCCTAATCTAGAACACAGCCCAGCCACCTCACCACCTCGCAACATTAAAATAATAATTATAAAAAGAAAATGAGTGGGTGGCGGCGGCTGCTGCTTCCGACGTGGACGTTGCTGCATTTTGAGGCGACACGCCACGCCACACACGAGTGAAGGGAAAGGCATAAGAAACGACGACGGTTTGGGGTGGATGGGGGGCGTACACAACACACGCGACGAAAGAGCGTGGGTGGGGTGTGAGGAAATATTGAGAATGGGATTTGTATCCCATAAGATGGACAGAAGAAAGTGTGTAGGTTACCCTTTGATTTGATTTGATGAAGAACGTGACACTCAAGGCGAATCCGGACCCACTCCTATGTACGCCCTGATTCCACCACGTTTCACTCCCTCCACCTCGCCTGATTTCGACACGTGTCCCCCCATTTTGAATTATTACGAGAAAATAATTTTATTTCATACAGAATTGGAGTCGTATTCCCAGTGTTGCTTCATCGTTGAATATGTATGTTGCTCTCTCTCTCTCTCTCTGTCTCTGTTTCTATCTGAATGTATTTGGTATGTGGGTTTTGAATCGCATAAGTTTAAGATATAGATTTAGTTCAAATATTAGATGTTTAGCTATCAATTTGATTTCTAGGGCTTAGTTTTTGAGATGCCATTAAAGCTCTTGAATCCTTAAAGTTGTCGAGTGTCGTAGAGGTTTGTTACATTGTAGCTTATCCTTTATACTATACTCGAATCATTTCTCCTTTTTCACTCATCGATGATAATACGATGGATGTTGATTTAATTGAAGACAATTGTTTAGGTCTCTTGGCTTTTGTAAGACTAGTGGGTACCTACAACTTATCTGCCTTCAATTCCCAGTCCTTGTACCTATAAAGATTCCTCTTTAGAAGGTTTTATTTTCATTCATCACATCATTTCTCACCATCCATTCTCAGGAGGATTTGGATTAGGATTTCGAATCTAAGTTTGATACCTAATAGTCCCAACATTCTCCTGCATTTCCTGTCATATGGGTACATTACTTCTCGCTTCTAAGAGGGAAGACTATCCCCACACACCAACACGAGCATTCTAACATGCTTTGGCTCCACTTATATGCATCCTAGGAAAATTTCTAAGAGGTCACTCAAACATAGAATTGCTCCAAGTAAAGCATGATTAACGTTAGAGTTTCTATGATTGAGCCACTAAAAAAGAAGGTGCACCTTGTTGGTATACGTAGTGACTTTAACTTCTTTTAAGTCTGTCTTAGTCATTCTATCCTCAAGTTCGTTTTGGTTCGGTTGTAGTCTTGGTTCATTCATGTATCCCTCTTTTACTCGGGTGTCACATGCTCACCAGTTTCTGCCTTCATTCGTCCCTGAACCACATCTTATTAGATAAGGTATCGTTTTAATACCATTTGTCATGACCCATGCTTAGGATTCATGCCTAGGATTCAGCACCTGATGACCCCAACATTTTCCTACAACAGGATGATGTTACTTCTCGTTTCTAAGAGTGGAGGCTATCCCCACACATACCAACACAAGTTTTTCAAGTATGCTTTGTTCTCACTCATATCATTCTAGAAAAATCAAGAGGCTATCTAACATAGAACTACTCCAAGTGTAGCACGCTTAACTTGGAAGTTCTTATGATTGAACCACGGAAAATGAATTCACTTATGTACTTCTCCTTCTCCTCTCCTCAGTGTCACATCATCCCTTGGATGAAAGACTCTACAACTTCTCTCTCCCTCTCGGTGGGAAGACTTTGATGCTGAATCTAAAGTTAGCCTAAACAGTAGGGAAGGGGATTCAGTTTTGATTGCACCAGAGGGAGGATTCACTTTTGAGCGAACTTCCTGATTGCCAGAAATTGCCTTCTACTGGTTTTGGTGCATCATTTCCCCTTAATAGAGGGGTTTCTGCCTCAAGGAATGGGTTGCCTACTGAGTTTAGACTCTCTTCGGATGGCTTAGCCAAATTGGGTGTGATGGAGGAACCTGCTAATGTTGCATCCCCACGCTTGCTGAACTATCACTTTTCTCCAGTTTTGAGAACTTCTCTGAATCAAAATACTACTCTTCTAACTATGCTTCTCTGTCGTTGTTAA

mRNA sequence

TTATATTATTATATTTGTTTTGGTTATAAAAATAATAAATGAAACGTAGAAAGGGAAAAGGAAAAGGAGTCAATAGAATTGCAGGCGGCGGAAGATTAATGCGGGAGAAATATGCTTATGGAGATTAGGTCCGCCGCACTCATAATATTGAGCAACGTACGGCGCGGGAGGGAGGATTCACTTTTGAGCGAACTTCCTGATTGCCAGAAATTGCCTTCTACTGGTTTTGGTGCATCATTTCCCCTTAATAGAGGGGTTTCTGCCTCAAGGAATGGGTTGCCTACTGAGTTTAGACTCTCTTCGGATGGCTTAGCCAAATTGGGTGTGATGGAGGAACCTGCTAATGTTGCATCCCCACGCTTGCTGAACTATCACTTTTCTCCAGTTTTGAGAACTTCTCTGAATCAAAATACTACTCTTCTAACTATGCTTCTCTGTCGTTGTTAA

Coding sequence (CDS)

ATGCTTATGGAGATTAGGTCCGCCGCACTCATAATATTGAGCAACGTACGGCGCGGGAGGGAGGATTCACTTTTGAGCGAACTTCCTGATTGCCAGAAATTGCCTTCTACTGGTTTTGGTGCATCATTTCCCCTTAATAGAGGGGTTTCTGCCTCAAGGAATGGGTTGCCTACTGAGTTTAGACTCTCTTCGGATGGCTTAGCCAAATTGGGTGTGATGGAGGAACCTGCTAATGTTGCATCCCCACGCTTGCTGAACTATCACTTTTCTCCAGTTTTGAGAACTTCTCTGAATCAAAATACTACTCTTCTAACTATGCTTCTCTGTCGTTGTTAA

Protein sequence

MLMEIRSAALIILSNVRRGREDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANVASPRLLNYHFSPVLRTSLNQNTTLLTMLLCRC
Homology
[Close]
BLAST of CmaCh03G012820 vs. ExPASy TrEMBL
Match: A0A1S3AZM8 (protein FRIGIDA-ESSENTIAL 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484505 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFP++RG+SASR+ LP EF LSSDG  +LGVMEEPANV
Sbjct: 301 REDSLLSALPDCQKLPSTNFGASFPISRGLSASRHELPPEFGLSSDGFTQLGVMEEPANV 360

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTLLT 106
           A PRLLN H SPV RTSLN N TL T
Sbjct: 361 ACPRLLNDHLSPVRRTSLNSNPTLPT 386

[Close]
BLAST of CmaCh03G012820 vs. ExPASy TrEMBL
Match: A0A1S3AZ88 (protein FRIGIDA-ESSENTIAL 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484505 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFP++RG+SASR+ LP EF LSSDG  +LGVMEEPANV
Sbjct: 301 REDSLLSALPDCQKLPSTNFGASFPISRGLSASRHELPPEFGLSSDGFTQLGVMEEPANV 360

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTLLT 106
           A PRLLN H SPV RTSLN N TL T
Sbjct: 361 ACPRLLNDHLSPVRRTSLNSNPTLPT 386

[Close]
BLAST of CmaCh03G012820 vs. ExPASy TrEMBL
Match: A0A5D3CP70 (Protein FRIGIDA-ESSENTIAL 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007630 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFP++RG+SASR+ LP EF LSSDG  +LGVMEEPANV
Sbjct: 324 REDSLLSALPDCQKLPSTNFGASFPISRGLSASRHELPPEFGLSSDGFTQLGVMEEPANV 383

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTLLT 106
           A PRLLN H SPV RTSLN N TL T
Sbjct: 384 ACPRLLNDHLSPVRRTSLNSNPTLPT 409

[Close]
BLAST of CmaCh03G012820 vs. ExPASy TrEMBL
Match: A0A0A0KHP2 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G518020 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.1e-27
Identity = 66/84 (78.57%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFPL+RG+SASR  LP EF +SSDG   LGVMEEP NV
Sbjct: 258 REDSLLSALPDCQKLPSTSFGASFPLSRGLSASRLELPPEFGVSSDGFTPLGVMEEPTNV 317

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTL 104
           A PRLLN H SPVLRTSLN N TL
Sbjct: 318 ACPRLLNDHLSPVLRTSLNSNPTL 341

[Close]
BLAST of CmaCh03G012820 vs. ExPASy TrEMBL
Match: A0A6J1CLT0 (protein FRIGIDA-ESSENTIAL 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012324 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 64/87 (73.56%), Postives = 67/87 (77.01%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDC KLPST FG S+PL+RGVS SRNGLP  F LSS    KLGVMEEPANV
Sbjct: 304 REDSLLSTLPDCHKLPSTSFGPSYPLSRGVSTSRNGLPPTFGLSSGSFMKLGVMEEPANV 363

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTLLTM 107
           A PRL N H SPV RT LN NTTL T+
Sbjct: 364 ACPRLQNDHLSPVSRT-LNLNTTLPTI 389

[Close]
BLAST of CmaCh03G012820 vs. NCBI nr
Match: XP_008439820.1 (PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1 [Cucumis melo] >XP_008439821.1 PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1 [Cucumis melo] >XP_008439822.1 PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFP++RG+SASR+ LP EF LSSDG  +LGVMEEPANV
Sbjct: 301 REDSLLSALPDCQKLPSTNFGASFPISRGLSASRHELPPEFGLSSDGFTQLGVMEEPANV 360

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTLLT 106
           A PRLLN H SPV RTSLN N TL T
Sbjct: 361 ACPRLLNDHLSPVRRTSLNSNPTLPT 386

[Close]
BLAST of CmaCh03G012820 vs. NCBI nr
Match: XP_008439823.1 (PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2 [Cucumis melo] >XP_008439825.1 PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2 [Cucumis melo] >XP_016899235.1 PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFP++RG+SASR+ LP EF LSSDG  +LGVMEEPANV
Sbjct: 301 REDSLLSALPDCQKLPSTNFGASFPISRGLSASRHELPPEFGLSSDGFTQLGVMEEPANV 360

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTLLT 106
           A PRLLN H SPV RTSLN N TL T
Sbjct: 361 ACPRLLNDHLSPVRRTSLNSNPTLPT 386

[Close]
BLAST of CmaCh03G012820 vs. NCBI nr
Match: KAA0052672.1 (protein FRIGIDA-ESSENTIAL 1 isoform X2 [Cucumis melo var. makuwa] >TYK13152.1 protein FRIGIDA-ESSENTIAL 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFP++RG+SASR+ LP EF LSSDG  +LGVMEEPANV
Sbjct: 324 REDSLLSALPDCQKLPSTNFGASFPISRGLSASRHELPPEFGLSSDGFTQLGVMEEPANV 383

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTLLT 106
           A PRLLN H SPV RTSLN N TL T
Sbjct: 384 ACPRLLNDHLSPVRRTSLNSNPTLPT 409

[Close]
BLAST of CmaCh03G012820 vs. NCBI nr
Match: KAE8647694.1 (hypothetical protein Csa_003675 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-27
Identity = 66/84 (78.57%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFPL+RG+SASR  LP EF +SSDG   LGVMEEP NV
Sbjct: 280 REDSLLSALPDCQKLPSTSFGASFPLSRGLSASRLELPPEFGVSSDGFTPLGVMEEPTNV 339

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTL 104
           A PRLLN H SPVLRTSLN N TL
Sbjct: 340 ACPRLLNDHLSPVLRTSLNSNPTL 363

[Close]
BLAST of CmaCh03G012820 vs. NCBI nr
Match: XP_031742828.1 (protein FRIGIDA-ESSENTIAL 1 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-27
Identity = 66/84 (78.57%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 20  REDSLLSELPDCQKLPSTGFGASFPLNRGVSASRNGLPTEFRLSSDGLAKLGVMEEPANV 79
           REDSLLS LPDCQKLPST FGASFPL+RG+SASR  LP EF +SSDG   LGVMEEP NV
Sbjct: 303 REDSLLSALPDCQKLPSTSFGASFPLSRGLSASRLELPPEFGVSSDGFTPLGVMEEPTNV 362

Query: 80  ASPRLLNYHFSPVLRTSLNQNTTL 104
           A PRLLN H SPVLRTSLN N TL
Sbjct: 363 ACPRLLNDHLSPVLRTSLNSNPTL 386

The following BLAST results are available for this feature:
BLAST of CmaCh03G012820 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G012820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AZM81.1e-2777.91protein FRIGIDA-ESSENTIAL 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484505 P... [more]
A0A1S3AZ881.1e-2777.91protein FRIGIDA-ESSENTIAL 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484505 P... [more]
A0A5D3CP701.1e-2777.91Protein FRIGIDA-ESSENTIAL 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0KHP24.1e-2778.57C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G518020 P... [more]
A0A6J1CLT05.6e-2473.56protein FRIGIDA-ESSENTIAL 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110... [more]
BLAST of CmaCh03G012820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439820.12.2e-2777.91PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1 [Cucumis melo] >XP_008439821.1... [more]
XP_008439823.12.2e-2777.91PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2 [Cucumis melo] >XP_008439825.1... [more]
KAA0052672.12.2e-2777.91protein FRIGIDA-ESSENTIAL 1 isoform X2 [Cucumis melo var. makuwa] >TYK13152.1 pr... [more]
KAE8647694.18.5e-2778.57hypothetical protein Csa_003675 [Cucumis sativus][more]
XP_031742828.18.5e-2778.57protein FRIGIDA-ESSENTIAL 1 [Cucumis sativus][more]
BLAST of CmaCh03G012820 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G012820.1CmaCh03G012820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding