CmaCh03G012660 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G012660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCma_Chr03: 8305280 .. 8306028 (-)
RNA-Seq ExpressionCmaCh03G012660
SyntenyCmaCh03G012660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGAAGCTAGTGATATGGAAGTCGCCAAGAAGGTGTTTGATGCAATGCCACAAAGAACAATTATAGTTTGGAACTCACTTATATCAGGATACGAGCAAAATGGATTCCCATCTGACGTTGGTGTTGGGCTTCCAACCCGATCCAATGACAACAGTGAGCTTATTATCTTCCCATTCTCACTACGGGCTCGTGATTTCGGTTGCTGGTTGCATGATTATGTTGATCTCAACGTTGTTCTTGGTGCTTCATTGATTAACATGTACACTACATGTGGGAATGTAAGCAAAGCGCGGGAAGTTTTTGACTCCATGAAGGAAATTAAGGAATGTTGTTACCTGGAAAGCCATGATTTCAGGGTACGGAATGCATGGCTATGGTGAGCAAGCAACGAAATTTTTTTGGTGAAATGAGAGCTAATGGTCCTTGTCCTAACAATATTGCATTTGTTGCAGTCTTGTCTGCATGTGCTCATTCAGGGTTGATTGATGATGCTCATCGGATATTTTCAAGCATGAAGGAAGTACATGGGTTAGTTCCAGGAGTAGAACATCATGTCTGCATGGTAGATATGTTTGGGTGTGCTGGATTTCTCGATGATGCTTATCAATTTATCAAAAAAATTCTTCCTGAAGAGCCAAGTGTGGCAGTTTGGACTTCAATGCTTGGGGCTTGCAGAAGGCATAAAAAGTTTGACCTTGGAGCTAAGGTTGCAAAACATGTTTCAGCACTTGATCCAAAAAACTGA

mRNA sequence

ATGCCAGAAGCTAGTGATATGGAAGTCGCCAAGAAGGTGTTTGATGCAATGCCACAAAGAACAATTATAGTTTGGAACTCACTTATATCAGGATACGAGCAAAATGGATTCCCATCTGACGTTGGTGTTGGGCTTCCAACCCGATCCAATGACAACAGTGAGCTTATTATCTTCCCATTCTCACTACGGGCTCGTGATTTCGGTTGCTGGTTGCATGATTATGTTGATCTCAACGTTGTTCTTGGTGCTTCATTGATTAACATGTACACTACATGGTACGGAATGCATGGCTATGTCTTGTCTGCATGTGCTCATTCAGGGTTGATTGATGATGCTCATCGGATATTTTCAAGCATGAAGGAAGTACATGGGTTAGTTCCAGGAGTAGAACATCATGTCTGCATGGTAGATATGTTTGGGTGTGCTGGATTTCTCGATGATGCTTATCAATTTATCAAAAAAATTCTTCCTGAAGAGCCAAGTGTGGCAGTTTGGACTTCAATGCTTGGGGCTTGCAGAAGGCATAAAAAGTTTGACCTTGGAGCTAAGGTTGCAAAACATGTTTCAGCACTTGATCCAAAAAACTGA

Coding sequence (CDS)

ATGCCAGAAGCTAGTGATATGGAAGTCGCCAAGAAGGTGTTTGATGCAATGCCACAAAGAACAATTATAGTTTGGAACTCACTTATATCAGGATACGAGCAAAATGGATTCCCATCTGACGTTGGTGTTGGGCTTCCAACCCGATCCAATGACAACAGTGAGCTTATTATCTTCCCATTCTCACTACGGGCTCGTGATTTCGGTTGCTGGTTGCATGATTATGTTGATCTCAACGTTGTTCTTGGTGCTTCATTGATTAACATGTACACTACATGGTACGGAATGCATGGCTATGTCTTGTCTGCATGTGCTCATTCAGGGTTGATTGATGATGCTCATCGGATATTTTCAAGCATGAAGGAAGTACATGGGTTAGTTCCAGGAGTAGAACATCATGTCTGCATGGTAGATATGTTTGGGTGTGCTGGATTTCTCGATGATGCTTATCAATTTATCAAAAAAATTCTTCCTGAAGAGCCAAGTGTGGCAGTTTGGACTTCAATGCTTGGGGCTTGCAGAAGGCATAAAAAGTTTGACCTTGGAGCTAAGGTTGCAAAACATGTTTCAGCACTTGATCCAAAAAACTGA

Protein sequence

MPEASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPFSLRARDFGCWLHDYVDLNVVLGASLINMYTTWYGMHGYVLSACAHSGLIDDAHRIFSSMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDLGAKVAKHVSALDPKN
Homology
BLAST of CmaCh03G012660 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 95/261 (36.40%), Postives = 135/261 (51.72%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDV--------GVGLPTRSNDNSE 62
           +  DME A++VFD MP+++I+ WNSL+SG+EQNG   +           G    S     
Sbjct: 154 KCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVS 213

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+       A   G W+H Y+     DLNV LG +LIN+Y+                   
Sbjct: 214 LLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETN 273

Query: 123 --TW------YGMHGY--------------------------VLSACAHSGLIDDAHRIF 182
              W      YG HGY                          VLSACAH+GL+++   ++
Sbjct: 274 VAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVY 333

Query: 183 SSMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKI--LPEEPSVAVWTSMLGACRR 196
             M + + L+PGVEHHVCMVDM G AGFLD+AY+FI ++    +  + A+WT+MLGAC+ 
Sbjct: 334 KRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKM 393

BLAST of CmaCh03G012660 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-27
Identity = 82/258 (31.78%), Postives = 120/258 (46.51%), Query Frame = 0

Query: 5   SDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPFS--- 64
           +++E A+K+FD  P++++  WN++ISGY QNG   D  + L  R    SE    P +   
Sbjct: 368 NEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED-AISL-FREMQKSEFSPNPVTITC 427

Query: 65  -------LRARDFGCWLHDYV-----DLNVVLGASLINMY-------------------- 124
                  L A   G W+HD V     + ++ +  +LI MY                    
Sbjct: 428 ILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKN 487

Query: 125 -TTW------YGMHGY-------------------------VLSACAHSGLIDDAHRIFS 184
             TW      YG+HG                          VL AC+H+GL+ +   IF+
Sbjct: 488 EVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFN 547

Query: 185 SMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKK 196
           SM   +G  P V+H+ CMVD+ G AG L  A QFI + +  EP  +VW ++LGACR HK 
Sbjct: 548 SMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI-EAMSIEPGSSVWETLLGACRIHKD 607

BLAST of CmaCh03G012660 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 79/257 (30.74%), Postives = 123/257 (47.86%), Query Frame = 0

Query: 6   DMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD--------VGVGLPTRSNDNSELII 65
           ++E A+ +FD+M +R I+ WN +I GY Q+GFP+D        +  G P          +
Sbjct: 207 NVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAAL 266

Query: 66  FPFS-LRARDFGCWLHDYVD-----LNVVLGASLINMYT--------------------- 125
              S + A + G W+H +V      LNV +   LI+MY+                     
Sbjct: 267 SACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIV 326

Query: 126 TW------YGMHGY--------------------------VLSACAHSGLIDDAHRIFSS 185
            W      Y MHGY                           L ACAH+GL+++  RIF S
Sbjct: 327 AWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFES 386

Query: 186 MKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKF 196
           M + +G+ P +EH+ C+V + G AG L  AY+ IK +  +  SV +W+S+LG+C+ H  F
Sbjct: 387 MGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSV-LWSSVLGSCKLHGDF 446

BLAST of CmaCh03G012660 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 77/253 (30.43%), Postives = 120/253 (47.43%), Query Frame = 0

Query: 6   DMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD-VGVGLPTRSNDNSELIIFPFS--- 65
           D + A+ +FD M QR+++ WN++ISGY  NGF  D V V    +  D     +   S   
Sbjct: 223 DCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLP 282

Query: 66  ----LRARDFGCWLHDYVD-----LNVVLGASLINMYT---------------------T 125
               L + + G WLH Y +     ++ VLG++LI+MY+                     T
Sbjct: 283 AISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVIT 342

Query: 126 W------YGMHGY-------------------------VLSACAHSGLIDDAHRIFSSMK 185
           W      + +HG                          +L+AC+H GL+++  R FS M 
Sbjct: 343 WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMV 402

Query: 186 EVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDL 194
            V GL P +EH+ CMVD+ G +G LD+A +FI   +P +P   +W ++LGACR     ++
Sbjct: 403 SVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN-MPIKPDDVIWKALLGACRMQGNVEM 462

BLAST of CmaCh03G012660 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.9e-26
Identity = 77/256 (30.08%), Postives = 114/256 (44.53%), Query Frame = 0

Query: 6   DMEVAKKVFDAMPQRTIIVWNSLISGYEQNG--------FPSDVGVGLPTRSNDNSELII 65
           DM  AK +F ++  R ++ W ++I GYEQ+G        F S VG G    S   + ++ 
Sbjct: 362 DMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLS 421

Query: 66  FPFSLRARDFGCWLHDYV-----DLNVVLGASLINMY----------------------T 125
              SL +   G  +H          +V +  +LI MY                       
Sbjct: 422 VASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTV 481

Query: 126 TWYGM------HGY-------------------------VLSACAHSGLIDDAHRIFSSM 185
           +W  M      HG+                         V SAC H+GL++   + F  M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541

Query: 186 KEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFD 196
           K+V  ++P + H+ CMVD+FG AG L +A +FI+K +P EP V  W S+L ACR HK  D
Sbjct: 542 KDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEK-MPIEPDVVTWGSLLSACRVHKNID 601

BLAST of CmaCh03G012660 vs. ExPASy TrEMBL
Match: A0A0A0KK64 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517370 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.9e-69
Identity = 141/233 (60.52%), Postives = 160/233 (68.67%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD-VGV-------GLPTRSNDNSE 62
           +ASDM+VAKKVFDAMPQRTII WNSLISGY+QNG P + +G+       G    S     
Sbjct: 236 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 295

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 296 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 355

Query: 123 --TW------YGMHGYVLSACAHSGLIDDAHRIFSSMKEVHGLVPGVEHHVCMVDMFGCA 182
             TW      YGMHGYVLSACAHSGLIDD  R+FSSMKE +GLVPGVEH+VCMVDMFG A
Sbjct: 356 VVTWTAMISGYGMHGYVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRA 415

Query: 183 GFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDLGAKVAKHVSALDPKN 196
           G L+DAYQFIKK +P+EP  AVWTSMLGACR H+ FDLG KVA+HV +++P+N
Sbjct: 416 GLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPEN 468

BLAST of CmaCh03G012660 vs. ExPASy TrEMBL
Match: A0A6J1EL35 (pentatricopeptide repeat-containing protein At2g33760 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433589 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.0e-65
Identity = 143/258 (55.43%), Postives = 154/258 (59.69%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD--------VGVGLPTRSNDNSE 62
           +A DM+VA+KVFD MPQRT I WNSLISGYEQNG P          +G G    S     
Sbjct: 176 KAGDMKVAQKVFDEMPQRTTIAWNSLISGYEQNGLPGKSIDLFNLMIGSGFQPDSATVVS 235

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 236 LLSSCSQLGALDFGCWLHDYANSNSFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKVRN 295

Query: 123 --TW------YGMHGY-------------------------VLSACAHSGLIDDAHRIFS 182
             TW      YGMHGY                         VLSACAHSGLIDD  R FS
Sbjct: 296 VVTWTAMISGYGMHGYGEQAMKLFNEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRAFS 355

Query: 183 SMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKK 196
           SMKEV+GLVPGVEHHVCMVDMFG AG L DAYQFI+K LPEEP  AVWTSMLGACR HK 
Sbjct: 356 SMKEVYGLVPGVEHHVCMVDMFGRAGLLKDAYQFIRKFLPEEPGPAVWTSMLGACRMHKN 415

BLAST of CmaCh03G012660 vs. ExPASy TrEMBL
Match: A0A6J1EEW7 (pentatricopeptide repeat-containing protein At2g33760 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433589 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.0e-65
Identity = 143/258 (55.43%), Postives = 154/258 (59.69%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD--------VGVGLPTRSNDNSE 62
           +A DM+VA+KVFD MPQRT I WNSLISGYEQNG P          +G G    S     
Sbjct: 176 KAGDMKVAQKVFDEMPQRTTIAWNSLISGYEQNGLPGKSIDLFNLMIGSGFQPDSATVVS 235

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 236 LLSSCSQLGALDFGCWLHDYANSNSFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKVRN 295

Query: 123 --TW------YGMHGY-------------------------VLSACAHSGLIDDAHRIFS 182
             TW      YGMHGY                         VLSACAHSGLIDD  R FS
Sbjct: 296 VVTWTAMISGYGMHGYGEQAMKLFNEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRAFS 355

Query: 183 SMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKK 196
           SMKEV+GLVPGVEHHVCMVDMFG AG L DAYQFI+K LPEEP  AVWTSMLGACR HK 
Sbjct: 356 SMKEVYGLVPGVEHHVCMVDMFGRAGLLKDAYQFIRKFLPEEPGPAVWTSMLGACRMHKN 415

BLAST of CmaCh03G012660 vs. ExPASy TrEMBL
Match: A0A5D3CPN1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007480 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.9e-65
Identity = 143/258 (55.43%), Postives = 160/258 (62.02%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD--------VGVGLPTRSNDNSE 62
           +ASDM+VAKKVFDAMPQRTII WNSLISG+EQNG P +        +  GL         
Sbjct: 172 KASDMKVAKKVFDAMPQRTIIAWNSLISGFEQNGLPQESIDLFHLMMKSGLQPDPATIVS 231

Query: 63  LIIFPFSLRARDFGCWLHDY-----VDLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 232 LLSSCSQLGALDFGCWLHDYSNVNGFDLNVVLGTSLINMYTRCGNVSKAQEVFDSMKERN 291

Query: 123 --TW------YGMHGY-------------------------VLSACAHSGLIDDAHRIFS 182
             TW      YGMHG+                         VLSACAHSGLIDD  R+FS
Sbjct: 292 VVTWTAMISGYGMHGHGKQAMKLFGEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFS 351

Query: 183 SMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKK 196
           SMKEV+GLVPGVEH+VCMVDMFG AG L+DAYQFIKKILP+EP  AVWTSMLGACR H+ 
Sbjct: 352 SMKEVYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKILPKEPGPAVWTSMLGACRMHRN 411

BLAST of CmaCh03G012660 vs. ExPASy TrEMBL
Match: A0A1S4DTH4 (pentatricopeptide repeat-containing protein At2g33760 OS=Cucumis melo OX=3656 GN=LOC103484519 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.9e-65
Identity = 143/258 (55.43%), Postives = 160/258 (62.02%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD--------VGVGLPTRSNDNSE 62
           +ASDM+VAKKVFDAMPQRTII WNSLISG+EQNG P +        +  GL         
Sbjct: 172 KASDMKVAKKVFDAMPQRTIIAWNSLISGFEQNGLPQESIDLFHLMMKSGLQPDPATIVS 231

Query: 63  LIIFPFSLRARDFGCWLHDY-----VDLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 232 LLSSCSQLGALDFGCWLHDYSNVNGFDLNVVLGTSLINMYTRCGNVSKAQEVFDSMKERN 291

Query: 123 --TW------YGMHGY-------------------------VLSACAHSGLIDDAHRIFS 182
             TW      YGMHG+                         VLSACAHSGLIDD  R+FS
Sbjct: 292 VVTWTAMISGYGMHGHGKQAMKLFGEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFS 351

Query: 183 SMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKK 196
           SMKEV+GLVPGVEH+VCMVDMFG AG L+DAYQFIKKILP+EP  AVWTSMLGACR H+ 
Sbjct: 352 SMKEVYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKILPKEPGPAVWTSMLGACRMHRN 411

BLAST of CmaCh03G012660 vs. NCBI nr
Match: KAG6604448.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.0 bits (972), Expect = 2.4e-101
Identity = 177/188 (94.15%), Postives = 182/188 (96.81%), Query Frame = 0

Query: 7   MEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPFSLRARD 66
           MEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPFSL ARD
Sbjct: 1   MEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPFSLWARD 60

Query: 67  FGCWLHDYVDLNVVLGASLINMYTTWYGMHGYVLSACAHSGLIDDAHRIFSSMKEVHGLV 126
           FGCWLHDY +LNVV GASLINMYT WYGMHGYVLSACAHSGLIDDAHR+FSSMKEV+ LV
Sbjct: 61  FGCWLHDYANLNVVFGASLINMYTRWYGMHGYVLSACAHSGLIDDAHRVFSSMKEVYVLV 120

Query: 127 PGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDLGAKVAK 186
           PGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEP +AVWTSMLGACRRHKKFDLGAKVAK
Sbjct: 121 PGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPCLAVWTSMLGACRRHKKFDLGAKVAK 180

Query: 187 HVSALDPK 195
           HVSALDP+
Sbjct: 181 HVSALDPE 188

BLAST of CmaCh03G012660 vs. NCBI nr
Match: KAG7034594.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.0 bits (933), Expect = 8.1e-97
Identity = 175/194 (90.21%), Postives = 181/194 (93.30%), Query Frame = 0

Query: 1   MPEASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPF 60
           MPEASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPF
Sbjct: 1   MPEASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPF 60

Query: 61  SLRARDFGCWLHDYVDLNVVLGASLINMYTTWYGMHGYVLSACAHSGLIDDAHRIFSSMK 120
           SL ARDFGCWLHDY +LNVV GASLINMYT +       LSACAHSGLIDDAHR+FSSMK
Sbjct: 61  SLWARDFGCWLHDYANLNVVFGASLINMYTRF-------LSACAHSGLIDDAHRVFSSMK 120

Query: 121 EVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDL 180
           EV+ LVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEP +AVWTSMLGACRRHKKFDL
Sbjct: 121 EVYVLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPCLAVWTSMLGACRRHKKFDL 180

Query: 181 GAKVAKHVSALDPK 195
           GAKVAKHVSALDP+
Sbjct: 181 GAKVAKHVSALDPE 187

BLAST of CmaCh03G012660 vs. NCBI nr
Match: XP_038881840.1 (pentatricopeptide repeat-containing protein At2g33760 isoform X2 [Benincasa hispida])

HSP 1 Score: 274.6 bits (701), Expect = 6.4e-70
Identity = 144/233 (61.80%), Postives = 158/233 (67.81%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD-VGV-------GLPTRSNDNSE 62
           +ASDM+VAKKVFDAMPQRTII WNSLISGYEQNGFP + +G+       G          
Sbjct: 276 KASDMKVAKKVFDAMPQRTIIAWNSLISGYEQNGFPKESIGIFHLMLESGFQPDPTTIVS 335

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 336 LLSSCSQLGALDFGCWLHDYANGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 395

Query: 123 --TW------YGMHGYVLSACAHSGLIDDAHRIFSSMKEVHGLVPGVEHHVCMVDMFGCA 182
             TW      YGMHG VLSACAHSGLIDD  R+FSSMKE +GLVPGVEHHVCMVDMFG A
Sbjct: 396 VVTWTAMISGYGMHGNVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHHVCMVDMFGRA 455

Query: 183 GFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDLGAKVAKHVSALDPKN 196
           G L+DAYQFIK  LP+EP  AVWTSMLGACR HK FDLG KVA+HV A++P+N
Sbjct: 456 GLLNDAYQFIKNFLPKEPGAAVWTSMLGACRMHKNFDLGVKVAEHVLAVEPEN 508

BLAST of CmaCh03G012660 vs. NCBI nr
Match: XP_011658211.1 (pentatricopeptide repeat-containing protein At2g33760 isoform X2 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 141/233 (60.52%), Postives = 160/233 (68.67%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD-VGV-------GLPTRSNDNSE 62
           +ASDM+VAKKVFDAMPQRTII WNSLISGY+QNG P + +G+       G    S     
Sbjct: 172 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 231

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 232 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 291

Query: 123 --TW------YGMHGYVLSACAHSGLIDDAHRIFSSMKEVHGLVPGVEHHVCMVDMFGCA 182
             TW      YGMHGYVLSACAHSGLIDD  R+FSSMKE +GLVPGVEH+VCMVDMFG A
Sbjct: 292 VVTWTAMISGYGMHGYVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRA 351

Query: 183 GFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDLGAKVAKHVSALDPKN 196
           G L+DAYQFIKK +P+EP  AVWTSMLGACR H+ FDLG KVA+HV +++P+N
Sbjct: 352 GLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPEN 404

BLAST of CmaCh03G012660 vs. NCBI nr
Match: XP_038881841.1 (pentatricopeptide repeat-containing protein At2g33760 isoform X3 [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 9.6e-66
Identity = 144/258 (55.81%), Postives = 158/258 (61.24%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD-VGV-------GLPTRSNDNSE 62
           +ASDM+VAKKVFDAMPQRTII WNSLISGYEQNGFP + +G+       G          
Sbjct: 172 KASDMKVAKKVFDAMPQRTIIAWNSLISGYEQNGFPKESIGIFHLMLESGFQPDPTTIVS 231

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+     L A DFGCWLHDY      DLNVVLG SLINMYT                   
Sbjct: 232 LLSSCSQLGALDFGCWLHDYANGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 291

Query: 123 --TW------YGMHG-------------------------YVLSACAHSGLIDDAHRIFS 182
             TW      YGMHG                          VLSACAHSGLIDD  R+FS
Sbjct: 292 VVTWTAMISGYGMHGNGEQAMKLFGEMRAHGPRPNNITFVAVLSACAHSGLIDDGRRVFS 351

Query: 183 SMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKK 196
           SMKE +GLVPGVEHHVCMVDMFG AG L+DAYQFIK  LP+EP  AVWTSMLGACR HK 
Sbjct: 352 SMKEAYGLVPGVEHHVCMVDMFGRAGLLNDAYQFIKNFLPKEPGAAVWTSMLGACRMHKN 411

BLAST of CmaCh03G012660 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 9.3e-43
Identity = 95/261 (36.40%), Postives = 135/261 (51.72%), Query Frame = 0

Query: 3   EASDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDV--------GVGLPTRSNDNSE 62
           +  DME A++VFD MP+++I+ WNSL+SG+EQNG   +           G    S     
Sbjct: 154 KCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVS 213

Query: 63  LIIFPFSLRARDFGCWLHDYV-----DLNVVLGASLINMYT------------------- 122
           L+       A   G W+H Y+     DLNV LG +LIN+Y+                   
Sbjct: 214 LLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETN 273

Query: 123 --TW------YGMHGY--------------------------VLSACAHSGLIDDAHRIF 182
              W      YG HGY                          VLSACAH+GL+++   ++
Sbjct: 274 VAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVY 333

Query: 183 SSMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKI--LPEEPSVAVWTSMLGACRR 196
             M + + L+PGVEHHVCMVDM G AGFLD+AY+FI ++    +  + A+WT+MLGAC+ 
Sbjct: 334 KRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKM 393

BLAST of CmaCh03G012660 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-28
Identity = 82/258 (31.78%), Postives = 120/258 (46.51%), Query Frame = 0

Query: 5   SDMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSDVGVGLPTRSNDNSELIIFPFS--- 64
           +++E A+K+FD  P++++  WN++ISGY QNG   D  + L  R    SE    P +   
Sbjct: 368 NEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED-AISL-FREMQKSEFSPNPVTITC 427

Query: 65  -------LRARDFGCWLHDYV-----DLNVVLGASLINMY-------------------- 124
                  L A   G W+HD V     + ++ +  +LI MY                    
Sbjct: 428 ILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKN 487

Query: 125 -TTW------YGMHGY-------------------------VLSACAHSGLIDDAHRIFS 184
             TW      YG+HG                          VL AC+H+GL+ +   IF+
Sbjct: 488 EVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFN 547

Query: 185 SMKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKK 196
           SM   +G  P V+H+ CMVD+ G AG L  A QFI + +  EP  +VW ++LGACR HK 
Sbjct: 548 SMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFI-EAMSIEPGSSVWETLLGACRIHKD 607

BLAST of CmaCh03G012660 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 79/257 (30.74%), Postives = 123/257 (47.86%), Query Frame = 0

Query: 6   DMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD--------VGVGLPTRSNDNSELII 65
           ++E A+ +FD+M +R I+ WN +I GY Q+GFP+D        +  G P          +
Sbjct: 207 NVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAAL 266

Query: 66  FPFS-LRARDFGCWLHDYVD-----LNVVLGASLINMYT--------------------- 125
              S + A + G W+H +V      LNV +   LI+MY+                     
Sbjct: 267 SACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIV 326

Query: 126 TW------YGMHGY--------------------------VLSACAHSGLIDDAHRIFSS 185
            W      Y MHGY                           L ACAH+GL+++  RIF S
Sbjct: 327 AWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFES 386

Query: 186 MKEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKF 196
           M + +G+ P +EH+ C+V + G AG L  AY+ IK +  +  SV +W+S+LG+C+ H  F
Sbjct: 387 MGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSV-LWSSVLGSCKLHGDF 446

BLAST of CmaCh03G012660 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 77/253 (30.43%), Postives = 120/253 (47.43%), Query Frame = 0

Query: 6   DMEVAKKVFDAMPQRTIIVWNSLISGYEQNGFPSD-VGVGLPTRSNDNSELIIFPFS--- 65
           D + A+ +FD M QR+++ WN++ISGY  NGF  D V V    +  D     +   S   
Sbjct: 223 DCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLP 282

Query: 66  ----LRARDFGCWLHDYVD-----LNVVLGASLINMYT---------------------T 125
               L + + G WLH Y +     ++ VLG++LI+MY+                     T
Sbjct: 283 AISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVIT 342

Query: 126 W------YGMHGY-------------------------VLSACAHSGLIDDAHRIFSSMK 185
           W      + +HG                          +L+AC+H GL+++  R FS M 
Sbjct: 343 WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMV 402

Query: 186 EVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFDL 194
            V GL P +EH+ CMVD+ G +G LD+A +FI   +P +P   +W ++LGACR     ++
Sbjct: 403 SVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN-MPIKPDDVIWKALLGACRMQGNVEM 462

BLAST of CmaCh03G012660 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-27
Identity = 77/256 (30.08%), Postives = 114/256 (44.53%), Query Frame = 0

Query: 6   DMEVAKKVFDAMPQRTIIVWNSLISGYEQNG--------FPSDVGVGLPTRSNDNSELII 65
           DM  AK +F ++  R ++ W ++I GYEQ+G        F S VG G    S   + ++ 
Sbjct: 362 DMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLS 421

Query: 66  FPFSLRARDFGCWLHDYV-----DLNVVLGASLINMY----------------------T 125
              SL +   G  +H          +V +  +LI MY                       
Sbjct: 422 VASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTV 481

Query: 126 TWYGM------HGY-------------------------VLSACAHSGLIDDAHRIFSSM 185
           +W  M      HG+                         V SAC H+GL++   + F  M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541

Query: 186 KEVHGLVPGVEHHVCMVDMFGCAGFLDDAYQFIKKILPEEPSVAVWTSMLGACRRHKKFD 196
           K+V  ++P + H+ CMVD+FG AG L +A +FI+K +P EP V  W S+L ACR HK  D
Sbjct: 542 KDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEK-MPIEPDVVTWGSLLSACRVHKNID 601

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P930111.3e-4136.40Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
Q9SUH62.4e-2731.78Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
Q9SZT81.6e-2630.74Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
Q9FI802.0e-2630.43Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... [more]
Q9SHZ85.9e-2630.08Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A0A0KK645.9e-6960.52DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G5173... [more]
A0A6J1EL353.0e-6555.43pentatricopeptide repeat-containing protein At2g33760 isoform X1 OS=Cucurbita mo... [more]
A0A6J1EEW73.0e-6555.43pentatricopeptide repeat-containing protein At2g33760 isoform X2 OS=Cucurbita mo... [more]
A0A5D3CPN13.9e-6555.43Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DTH43.9e-6555.43pentatricopeptide repeat-containing protein At2g33760 OS=Cucumis melo OX=3656 GN... [more]
Match NameE-valueIdentityDescription
KAG6604448.12.4e-10194.15Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7034594.18.1e-9790.21Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_038881840.16.4e-7061.80pentatricopeptide repeat-containing protein At2g33760 isoform X2 [Benincasa hisp... [more]
XP_011658211.11.2e-6860.52pentatricopeptide repeat-containing protein At2g33760 isoform X2 [Cucumis sativu... [more]
XP_038881841.19.6e-6655.81pentatricopeptide repeat-containing protein At2g33760 isoform X3 [Benincasa hisp... [more]
Match NameE-valueIdentityDescription
AT2G33760.19.3e-4336.40Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G30700.11.7e-2831.78Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G37380.11.1e-2730.74Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G48910.11.4e-2730.43Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G22070.14.2e-2730.08pentatricopeptide (PPR) repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 24..40
e-value: 0.023
score: 15.0
coord: 99..121
e-value: 0.012
score: 15.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 98..127
e-value: 4.5E-4
score: 18.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 67..194
e-value: 3.7E-17
score: 64.7
NoneNo IPR availablePANTHERPTHR24015:SF46OS12G0181900 PROTEINcoord: 4..90
NoneNo IPR availablePANTHERPTHR24015:SF46OS12G0181900 PROTEINcoord: 99..195
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 4..90
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 99..195

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G012660.1CmaCh03G012660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding