CmaCh03G011930 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G011930
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein SHOOT GRAVITROPISM 6
LocationCma_Chr03: 7966128 .. 7966840 (-)
RNA-Seq ExpressionCmaCh03G011930
SyntenyCmaCh03G011930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTAGTTATATGTTTTAAACGTTCTGTGTTCTGTGTTAGGATGGTTATTGGTGTGATGGGTAAATTGGGTCTAGGGTCTTTTCATCATTCTCGTGCATCTGCATTCTGTCAAGGGAAATAAGCAGTGTTTTTAATATTTGTTAAATATAAATCTGAGATACTATAGAAATTGGGCTACTAAGTTATAAATTGGATCAGATTGATTTTTGAGTATATAAATCATGATAACTTCTTAATGTGTTGAAATACTTCAACATTGACCAGTCGTTGACATATAAAATATAGTATGCCATGTGGGGAAATTATCTATCATGCTATTACTAGTCTTTCTTTATTGTTCTTACTGTGCTATAAGGATGAGTATGCTATTGAATCTGATTGATTTTTTCTTTGGGAAGTTCTAGATACCTAAAATGAAGGCATATATTAGTGATTCAGAAGATCTGAAGCAGAACCCTTTATATCAAGAGACTTGGGATGACATGATAATTAACGTAAGTGTTCCTCGTAGAAACATGGACGTTTCAACTTATTATTAATTTGTTTTTCTTGGATCTGCACCGTTTTAATTTAATCCTCACGGTGCTCTGATCTTTTATTTTTTTTTGGTAACATTGTGGTACTCAATTAGAATTTTTTTTAGATCGTTTGCAGTTATTCTTCAATAATCCAAGTAGATCACTCAATTTTCTAATTAATGTGGCCTAA

mRNA sequence

ATGCTGTTAGTTATATGTTTTAAACGTTCTGTGTTCTGTGTTAGGATGATACCTAAAATGAAGGCATATATTAGTGATTCAGAAGATCTGAAGCAGAACCCTTTATATCAAGAGACTTGGGATGACATGATAATTAACTTATTCTTCAATAATCCAAGTAGATCACTCAATTTTCTAATTAATGTGGCCTAA

Coding sequence (CDS)

ATGCTGTTAGTTATATGTTTTAAACGTTCTGTGTTCTGTGTTAGGATGATACCTAAAATGAAGGCATATATTAGTGATTCAGAAGATCTGAAGCAGAACCCTTTATATCAAGAGACTTGGGATGACATGATAATTAACTTATTCTTCAATAATCCAAGTAGATCACTCAATTTTCTAATTAATGTGGCCTAA

Protein sequence

MLLVICFKRSVFCVRMIPKMKAYISDSEDLKQNPLYQETWDDMIINLFFNNPSRSLNFLINVA
Homology
BLAST of CmaCh03G011930 vs. ExPASy Swiss-Prot
Match: F4IP13 (Protein SHOOT GRAVITROPISM 6 OS=Arabidopsis thaliana OX=3702 GN=SGR6 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-08
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 10  SVFCVRMIPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           S+F    IPKMKAY+ D+EDLK +P YQETWDDMIIN
Sbjct: 594 SMFWQDEIPKMKAYVYDTEDLKLDPTYQETWDDMIIN 630

BLAST of CmaCh03G011930 vs. ExPASy TrEMBL
Match: A0A6J1IJZ3 (protein SHOOT GRAVITROPISM 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-08
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 586 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 638

BLAST of CmaCh03G011930 vs. ExPASy TrEMBL
Match: A0A6J1IQ24 (protein SHOOT GRAVITROPISM 6 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-08
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 424 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 476

BLAST of CmaCh03G011930 vs. ExPASy TrEMBL
Match: A0A6J1IMD7 (protein SHOOT GRAVITROPISM 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-08
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 586 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 638

BLAST of CmaCh03G011930 vs. ExPASy TrEMBL
Match: A0A6J1IIH9 (protein SHOOT GRAVITROPISM 6 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477800 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-08
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 586 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 638

BLAST of CmaCh03G011930 vs. ExPASy TrEMBL
Match: A0A0A0KES7 (Cnd1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G448680 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-08
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 552 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 604

BLAST of CmaCh03G011930 vs. NCBI nr
Match: XP_023543667.1 (protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 586 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 638

BLAST of CmaCh03G011930 vs. NCBI nr
Match: XP_022977462.1 (protein SHOOT GRAVITROPISM 6 isoform X3 [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 586 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 638

BLAST of CmaCh03G011930 vs. NCBI nr
Match: XP_022977463.1 (protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 424 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 476

BLAST of CmaCh03G011930 vs. NCBI nr
Match: XP_011657679.1 (protein SHOOT GRAVITROPISM 6 [Cucumis sativus] >KAE8647413.1 hypothetical protein Csa_003936 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 586 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 638

BLAST of CmaCh03G011930 vs. NCBI nr
Match: XP_022925798.1 (protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita moschata])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 1   MLLVICFKRSVFCVRM-------IPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           +L V+C+   +F   +       IPKMKAYISDSEDLKQNPLYQETWDDMIIN
Sbjct: 424 ILTVLCYLAPLFPKNINLFWQDEIPKMKAYISDSEDLKQNPLYQETWDDMIIN 476

BLAST of CmaCh03G011930 vs. TAIR 10
Match: AT2G36810.1 (ARM repeat superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 4.9e-09
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 10  SVFCVRMIPKMKAYISDSEDLKQNPLYQETWDDMIIN 47
           S+F    IPKMKAY+ D+EDLK +P YQETWDDMIIN
Sbjct: 594 SMFWQDEIPKMKAYVYDTEDLKLDPTYQETWDDMIIN 630

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
F4IP136.8e-0870.27Protein SHOOT GRAVITROPISM 6 OS=Arabidopsis thaliana OX=3702 GN=SGR6 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1IJZ39.3e-0864.15protein SHOOT GRAVITROPISM 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477... [more]
A0A6J1IQ249.3e-0864.15protein SHOOT GRAVITROPISM 6 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111477... [more]
A0A6J1IMD79.3e-0864.15protein SHOOT GRAVITROPISM 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477... [more]
A0A6J1IIH99.3e-0864.15protein SHOOT GRAVITROPISM 6 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111477... [more]
A0A0A0KES79.3e-0864.15Cnd1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G448680 PE=4 S... [more]
Match NameE-valueIdentityDescription
XP_023543667.11.9e-0764.15protein SHOOT GRAVITROPISM 6 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022977462.11.9e-0764.15protein SHOOT GRAVITROPISM 6 isoform X3 [Cucurbita maxima][more]
XP_022977463.11.9e-0764.15protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita maxima][more]
XP_011657679.11.9e-0764.15protein SHOOT GRAVITROPISM 6 [Cucumis sativus] >KAE8647413.1 hypothetical protei... [more]
XP_022925798.11.9e-0764.15protein SHOOT GRAVITROPISM 6 isoform X4 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G36810.14.9e-0970.27ARM repeat superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G011930.1CmaCh03G011930.1mRNA