CmaCh03G010250 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G010250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 7149325 .. 7149852 (+)
RNA-Seq ExpressionCmaCh03G010250
SyntenyCmaCh03G010250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTGAGTCACTGTATGGAGGAGGGGCGTGCCTGTTTGATTACTGAGAAGGCTTTGTGGGTGCGTAACAGAGAGAGATTGCAGAGGCAAAAAGGTGTTCTGAGATACCCACATGGAGAAACAATCATCGAAAGTGAGATGAATGCAAATTGGTGAGTGATAAAGCACCAATTCCCACCTCTTTCCTTTTCATTTCTTTTTTCCTTTGTGGGTCTTCTCATCTTTTCTTTAATGCACAAAGTTCAAACCATTTCTTCGCTAATTATTCCACTTACAAGCCTTTGTTCCTTGGTTCCCTCGATGCTTAACACCGGACCTCCCTTTTCAATCATCAATAAGAGGTGGGTTTTCTCAGAATTCTCAATTCTTCACTTCAACAGATGGTTATGAGTTTTGTGTTCGAGTTTTTTAGGGTTTCTTCAAAATGAATTGGAGGCTGGGAATGGTTTGAATGCTTATGATTCTGAACAACATTATGAATTGGGTACTAAAGTCTTAGTTCAGTTCAAAGCTTGGAATCTTTGA

mRNA sequence

ATGTCTTTGAGTCACTGTATGGAGGAGGGGCGTGCCTGTTTGATTACTGAGAAGGCTTTGTGGGTGCGTAACAGAGAGAGATTGCAGAGGCAAAAAGGGTTTCTTCAAAATGAATTGGAGGCTGGGAATGGTTTGAATGCTTATGATTCTGAACAACATTATGAATTGGGTACTAAAGTCTTAGTTCAGTTCAAAGCTTGGAATCTTTGA

Coding sequence (CDS)

ATGTCTTTGAGTCACTGTATGGAGGAGGGGCGTGCCTGTTTGATTACTGAGAAGGCTTTGTGGGTGCGTAACAGAGAGAGATTGCAGAGGCAAAAAGGGTTTCTTCAAAATGAATTGGAGGCTGGGAATGGTTTGAATGCTTATGATTCTGAACAACATTATGAATTGGGTACTAAAGTCTTAGTTCAGTTCAAAGCTTGGAATCTTTGA

Protein sequence

MSLSHCMEEGRACLITEKALWVRNRERLQRQKGFLQNELEAGNGLNAYDSEQHYELGTKVLVQFKAWNL
Homology
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BLAST of CmaCh03G010250 vs. NCBI nr
Match: KAG6604222.1 (hypothetical protein SDJN03_04831, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 0 

Query: 1  MSLSHCMEEGRACLITEKALWVRNRERLQRQKG-------------FLQNELEAGNGLNA 60
          MSLSHCME+GRACLITEKALWVRNRERLQRQKG             FL+NELEAGNGLNA
Sbjct: 1  MSLSHCMEKGRACLITEKALWVRNRERLQRQKGVLKDPHGETIIKRFLRNELEAGNGLNA 60

Query: 61 YDSEQHYELGTKVLVQFKAWNL 70
          YDSE+HYELGTKVLVQ+KAWNL
Sbjct: 61 YDSEEHYELGTKVLVQYKAWNL 82

The following BLAST results are available for this feature:
BLAST of CmaCh03G010250 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G010250 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G010250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604222.14.1e-2779.27hypothetical protein SDJN03_04831, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh03G010250 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G010250.1CmaCh03G010250.1mRNA