CmaCh03G008780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G008780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 6475645 .. 6477217 (-)
RNA-Seq ExpressionCmaCh03G008780
SyntenyCmaCh03G008780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAATTCGGTGTCCTTCTCCCCCTTCATCATAATTCCCCACACCGATCCGGTAACGCATTCCGGCGGAACCCACTTCAACAACCATATATCATGTCCTTCAAACGAACCCATTTGTTTCTTTTGGTTGAGGACGAGTTGAATGGCGGTTCCGGCACGGAGTTGACTGATCTGGGCCTAAGAATCTTAGAGAAATGTGGTGGGGCGGGCGGCGACGGTAACAGATAGTACTAGAAGAGTGACAACAGAGGAAGCAGTTGCTTGTTTCAAGGAGAGGGTAGGATGCAGTGCCATCAGTGTGTTAATTTGACAAGGAAGGATGAAAGCTGTGGGGCTATAGATAGCTGCATGATGTGCAAATATGAATCACGAGCGACAATTTTTTTGTTCGTTTGTTTTTTTATTAGACATTTGCGCTTGCATTGATGTGTGTACCTTAATATATTCCGAGACATTGATTGGTTGTCCCAGAATCAACAAAGCTTGCATTATAATTTATCATATACATTGAGCTCATTGGAATTTAAGGCTGTAGATCCAAGGCAATGGATTGAAGCATTTGAAGCTGTGGCATTAGGTGGGGTTTGAGTTGAAGCAGCGAAACTGGGTGTAATTGACGAAGAGAAAATTATGGGAGTATTGAGTGATTATTAGGTTGTGAGCTTGGTGTAAAGGAGGGCCCTTGGAATTAAGTCCAAAGATATGGAAGATATTCTATTCTTATGGACGTCAATATCACTGTCGGTTCCTTTTCCTTTACAACCAGCTTTGTTAAGAGTTTTACAAATTCCCATACCCCAACCGTTTTTCTCAATTCCCCTTTCAACACAAAATTCAATTTGATGTTTGATGCCACAATTATGGTCGATTATGGTTGATTATTATGTCACGATTATGTCATTATGGTTGAGCCTCCACGATTATAATACAAAAAAAGTAACTTCTATTTATTTTAAGTGACGTTGATTCATTCATGATTATGGTTGGTGGTCCCAGTCGTCTTCTAGTTGAACATGCCAAACACGTTCCAATATTTTAAGTTAGTATTAAGTTACAGTGAAATCGAGTTGGACTTGTATGTCTTTGAAGGTAAGGATGTCTCCTTATCTACACTACTCTTGTAATAGTCTAAGCCCACTATTAGTATCGTGTACTCTTATTTCTATTAATAGTCCAAATTCCATGTCGGTTGAGATCCCACATCGATTGGAGGGAAAGCCTAGGAGGAAAAGGCCACTGATAGATATTGTCCGTTTTGACTCGTTACGAATCTCACTATTGTAAACATATGACCGTACGTTTTGGGAATTAGATAAATATAAGAAAGGCAAAATTTATAATTGATTGGGCTGTTTGAAGTGTAAAGCCCAAATAATGTAAGCAAAGGAGCAATAATTATAGTTTTGGAGGGAGGGCATGTGATGTGAGGAAGCAATTGACAAATGACAAGCAAACTCGTAGTTGGGAAAATCCTGTAGTGGGTCTCTTGCTTGGGAAGAAGAAAGGATATGGATATGGCGTGATGAGGTGGGCGAGTTCAGAACAAAATCACAACAATCCCAAAACTTGA

mRNA sequence

ATGATCGAATTCGGTGTCCTTCTCCCCCTTCATCATAATTCCCCACACCGATCCGGTAACGCATTCCGGCGGAACCCACTTCAACAACCATATATCATGTCCTTCAAACGAACCCATTTGTTTCTTTTGGTTGAGGACGAGTTGAATGGCGGTTCCGGCACGGAGTTGACTGATCTGGGCCTAAGAATCTTAGAGAAATGTGGTGGGGCGGGCGGCGACGGGAGGGCATGTGATGTGAGGAAGCAATTGACAAATGACAAGCAAACTCGTAGTTGGGAAAATCCTGTAGTGGGTCTCTTGCTTGGGAAGAAGAAAGGATATGGATATGGCGTGATGAGGTGGGCGAGTTCAGAACAAAATCACAACAATCCCAAAACTTGA

Coding sequence (CDS)

ATGATCGAATTCGGTGTCCTTCTCCCCCTTCATCATAATTCCCCACACCGATCCGGTAACGCATTCCGGCGGAACCCACTTCAACAACCATATATCATGTCCTTCAAACGAACCCATTTGTTTCTTTTGGTTGAGGACGAGTTGAATGGCGGTTCCGGCACGGAGTTGACTGATCTGGGCCTAAGAATCTTAGAGAAATGTGGTGGGGCGGGCGGCGACGGGAGGGCATGTGATGTGAGGAAGCAATTGACAAATGACAAGCAAACTCGTAGTTGGGAAAATCCTGTAGTGGGTCTCTTGCTTGGGAAGAAGAAAGGATATGGATATGGCGTGATGAGGTGGGCGAGTTCAGAACAAAATCACAACAATCCCAAAACTTGA

Protein sequence

MIEFGVLLPLHHNSPHRSGNAFRRNPLQQPYIMSFKRTHLFLLVEDELNGGSGTELTDLGLRILEKCGGAGGDGRACDVRKQLTNDKQTRSWENPVVGLLLGKKKGYGYGVMRWASSEQNHNNPKT
Homology
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BLAST of CmaCh03G008780 vs. NCBI nr
Match: KAG6604096.1 (EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-09
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 33 MSFKRTHLFLLVEDELNGGSGTELTDLGLRILEKCGGAGG-DGRACDVRKQLTNDKQTRS 92
          MSFKRT+LFLLVEDELNGGSGTELT L L ILEKCG AGG      D  +++T +++   
Sbjct: 1  MSFKRTYLFLLVEDELNGGSGTELTVLVLGILEKCGRAGGWAATVTDSTRRVTTEEEIAC 60

Query: 93 WENPVV 98
          ++   V
Sbjct: 61 FKERAV 66

The following BLAST results are available for this feature:
BLAST of CmaCh03G008780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G008780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G008780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604096.19.1e-0957.58EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subs... [more]
BLAST of CmaCh03G008780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G008780.1CmaCh03G008780.1mRNA