CmaCh03G006890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G006890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	WD_REPEATS_REGION domain-containing protein
Location	Cma_Chr03: 5692129 .. 5693684 (+)
RNA-Seq Expression	CmaCh03G006890
Synteny	CmaCh03G006890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGCGAGGCCGTTTTTCGATTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGTGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACGAGATAATTCTCGACCGCGGATCAGTGGACGCCGATGATGATATGGCTGCGTCGGTGCCGTTGCCGGTCAGGTAAAAGTTTTATTTGGGTAACTGGCGGCGGAGCAAGGGATTGCTTGCATTTCAATTTAGCAACTTCGTGTGTTTGAAGTTAATGTATCCGGTTTTACAGTTTGGTTTTTATAGTCTGATAGACGTGTAATATATACTTGGATAATAGAAGAATTTATAATTTGGTGTGTTAGAAATTTCTCGTGGGGATATTTTTTCAATAACTTTAATATTAATATAAAAAATAAAAATAAAAATAAAAAATAAAAAACTTGGGCCACACCATTAGAGAGGTTTTAATTTTTTCCCTATACTTTTGTCCAATTTTATGTCCCACTTAGTTTAATATAAATATAGTTTTAATATTAACTAATTTTGAGATTCTAAATAATATTTAAACCGAAAACTTTGTTGTAAATTTTTTTTAATGGTTAAAGACGGTGGTGTAATATTAAAATTTAAAATTTTAAGAATAGTGGAGATAGAATTTATTATATTATATTTGCTTGTCAAATATATCTATTTATTATGATGTTTAAACATTTTTTTAATAAACATTATATCAAAAATGAAAATTTTTAAATAAGTTTTGGATCCACAAATTCTTGTTGACCAATTCTGGATCCCAACAAAAATAAATGAGAAATGAAATAGGTAATGGAGAGGAGGACGAGGAAGATTTTCCTATATACATCTATGGTTTATTCAAATTTATAAATTTTAATTTTAAATTTAATAAAATTCATCCCATCTATAGAATCATGAAATTAAAAGTTTAATATTGTATGTCAAATATAAAATTAATTCAATTTTATGTCTAATAAATTAGTTTATTAAAAAATGTAAAACAAATGTAAAAACGAGTAAAAGCGAACCATATGTAGTGGAAGGATAGAAAGTAACAGGTGGAAGAAAAGGGAGGGGTTGTTGCAGAAAGAGCAGGGAGGAATATGGGCTGCAGAGAGTGTCGGCTGTGATCAAGAGCAGCAGGGAAGGGAAGGGAGAATTGATACTTTGAAAGTGTCCAAATTGGAAGTGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTCATTTGGGCCATGTTACTAGTAAAGAACATTACGTACTGGAAGCCTCAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTAAATTTGAGTGTACATACCCACCAGCCATGAATAGAAGGTTAGCGTTGAGCTATTTAGACTGA

mRNA sequence

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGCGAGGCCGTTTTTCGATTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGTGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACGAGATAATTCTCGACCGCGGATCAGTGGACGCCGATGATGATATGGCTGCGTCGGTGCCGTTGCCGGTCAGTGGAAGGATAGAAAGTAACAGGTGGAAGAAAAGGGAGGGGTTGTTGCAGAAAGAGCAGGGAGGAATATGGGCTGCAGAGAGTGTCGGCTGTGATCAAGAGCAGCAGGGAAGGGAAGGGAGAATTGATACTTTGAAAGTGTCCAAATTGGAAGTGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTCATTTGGGCCATGTTACTAGTAAAGAACATTACGTACTGGAAGCCTCAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTAAATTTGAGTGTACATACCCACCAGCCATGAATAGAAGGTTAGCGTTGAGCTATTTAGACTGA

Coding sequence (CDS)

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGCGAGGCCGTTTTTCGATTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGTGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACGAGATAATTCTCGACCGCGGATCAGTGGACGCCGATGATGATATGGCTGCGTCGGTGCCGTTGCCGGTCAGTGGAAGGATAGAAAGTAACAGGTGGAAGAAAAGGGAGGGGTTGTTGCAGAAAGAGCAGGGAGGAATATGGGCTGCAGAGAGTGTCGGCTGTGATCAAGAGCAGCAGGGAAGGGAAGGGAGAATTGATACTTTGAAAGTGTCCAAATTGGAAGTGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTCATTTGGGCCATGTTACTAGTAAAGAACATTACGTACTGGAAGCCTCAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTAAATTTGAGTGTACATACCCACCAGCCATGAATAGAAGGTTAGCGTTGAGCTATTTAGACTGA

Protein sequence

MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDEIILDRGSVDADDDMAASVPLPVSGRIESNRWKKREGLLQKEQGGIWAAESVGCDQEQQGREGRIDTLKVSKLEVKRSKRAGVGGCHLGHVTSKEHYVLEASKSFEDVHGSTAKFECTYPPAMNRRLALSYLD

Homology

[Close]

BLAST of CmaCh03G006890 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 100/133 (75.19%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDD-VVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDEIILDRGSV-D 120
           TNHH +AGA FQDD VVRRR SY N DHHHSEAVADCIEFIK KAYSDDE+ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

[Close]

BLAST of CmaCh03G006890 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-31
Identity = 86/117 (73.50%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MAEKTRRVPGK---------AKLRGDD-MKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K          K R DD  KN+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDD-VVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDD-EIILDRG 105
           TNHH +AGA FQDD VVRRR SY N DHHHSEAVADCIEFIK KAYSDD E+IL  G
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 117

[Close]

BLAST of CmaCh03G006890 vs. ExPASy TrEMBL
Match: A0A4U5PT50 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSDDEII----LDRGSVDADDDMAASVPL 119
           SEAVADCIEFIKK + +D E I        S DA  +MA  VP+
Sbjct: 88  SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDATGEMAMPVPV 129

[Close]

BLAST of CmaCh03G006890 vs. ExPASy TrEMBL
Match: B9MXG5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDEIIL--DRGSVDADDDMAASVPLPVS 122
           SEAVADCIEFIKK + +D E I      S   DD    ++P+PV+
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPVT 148

[Close]

BLAST of CmaCh03G006890 vs. ExPASy TrEMBL
Match: A0A5N5MNX3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_007703 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +M  ALSKAT++ +AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMFSALSKATHNAAAGSSPDHLVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSD-DEIILDRGSVDADDDMAASVPLPV 121
           SEAVADCIEFIK+ + +D DEI  D  +  +  +MAA +P+PV
Sbjct: 88  SEAVADCIEFIKRSSLTDHDEINRDSTASSSSSEMAA-MPVPV 128

[Close]

BLAST of CmaCh03G006890 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.4 bits (755), Expect = 4.2e-76
Identity = 149/165 (90.30%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF 60
           MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF
Sbjct: 1   MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVF 60

Query: 61  QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDEIILDRGSVDADDDMAASVPLPV 120
           QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDD+IILDRGSVDADDDMA SVPLPV
Sbjct: 61  QDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSVPLPV 120

Query: 121 SGRIESNRWKKREGLLQKEQGGIWAAESVGCDQEQQGREGRIDTL 166
                  RWKKREGLL+KE GGIWAAESV CDQ+QQ REGR D L
Sbjct: 121 -------RWKKREGLLRKEHGGIWAAESVSCDQKQQAREGRFDAL 158

[Close]

BLAST of CmaCh03G006890 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 8.2e-40
Identity = 100/133 (75.19%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDD-VVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDEIILDRGSV-D 120
           TNHH +AGA FQDD VVRRR SY N DHHHSEAVADCIEFIK KAYSDDE+ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

[Close]

BLAST of CmaCh03G006890 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 6.9e-31
Identity = 86/117 (73.50%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MAEKTRRVPGK---------AKLRGDD-MKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K          K R DD  KN+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDD-VVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDD-EIILDRG 105
           TNHH +AGA FQDD VVRRR SY N DHHHSEAVADCIEFIK KAYSDD E+IL  G
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 117

[Close]

BLAST of CmaCh03G006890 vs. NCBI nr
Match: KAF9682207.1 (hypothetical protein SADUNF_Sadunf05G0084600 [Salix dunnii])

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-14
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT++ +AG+      +++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKATHNAAAGSSPDHHAMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSD-DEIILDRGSVDADDDMAASVPLPV 121
           SEAVADCIEFIKK + SD  EI  D  +  + DD +  V +PV
Sbjct: 88  SEAVADCIEFIKKSSLSDHQEINRDSTASSSFDDTSEMVVMPV 129

[Close]

BLAST of CmaCh03G006890 vs. NCBI nr
Match: TKS00259.1 (hypothetical protein D5086_0000184720 [Populus alba])

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-14
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 28  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 87

Query: 79  SEAVADCIEFIKKKAYSDDEII----LDRGSVDADDDMAASVPL 119
           SEAVADCIEFIKK + +D E I        S DA  +MA  VP+
Sbjct: 88  SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDATGEMAMPVPV 129

The following BLAST results are available for this feature:

BLAST of CmaCh03G006890 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G006890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN3	4.0e-40	75.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1	[more]
A0A5A7SHP0	3.4e-31	73.50	Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A4U5PT50	1.7e-14	51.92	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000184720 PE=4 SV=1	[more]
B9MXG5	2.2e-14	50.48	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G114500 PE=4 ...	[more]
A0A5N5MNX3	2.2e-14	50.49	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_007703 PE=4 SV=1	[more]

BLAST of CmaCh03G006890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603914.1	4.2e-76	90.30	hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49339.2	8.2e-40	75.19	hypothetical protein Csa_003207 [Cucumis sativus]	[more]
KAA0025678.1	6.9e-31	73.50	Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1...	[more]
KAF9682207.1	2.7e-14	50.49	hypothetical protein SADUNF_Sadunf05G0084600 [Salix dunnii]	[more]
TKS00259.1	3.5e-14	51.92	hypothetical protein D5086_0000184720 [Populus alba]	[more]

BLAST of CmaCh03G006890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 19..117
None	No IPR available	PANTHER	PTHR35111:SF1	EXPRESSED PROTEIN	coord: 19..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006890.1	CmaCh03G006890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:2000031	regulation of salicylic acid mediated signaling pathway
biological_process	GO:0010337	regulation of salicylic acid metabolic process