CmaCh03G005860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G005860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr03: 5265108 .. 5265407 (+)
RNA-Seq Expression	CmaCh03G005860
Synteny	CmaCh03G005860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAGGATGGCTACTTTATTCAGCAGCTCGTCTTCTTGGGAACCCGAATCATGAGGTCCATGGCTACGGTGAAGAGAGGAGCTCAAAAGGGAAAAAGGGTTGTGAAGAAATATGCACTTCTTCTGGGTTTCAAATGCCTCTCCATTACCCTCACTACACCAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGGTGGATCAGCTTCTCAAGGAATATGGCTTGAGCTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTCCTATGGCCTGATCAGTATTAA

mRNA sequence

ATGGCTTTAGGATGGCTACTTTATTCAGCAGCTCGTCTTCTTGGGAACCCGAATCATGAGGTCCATGGCTACGGTGAAGAGAGGAGCTCAAAAGGGAAAAAGGGTTGTGAAGAAATATGCACTTCTTCTGGGTTTCAAATGCCTCTCCATTACCCTCACTACACCAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGGTGGATCAGCTTCTCAAGGAATATGGCTTGAGCTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTCCTATGGCCTGATCAGTATTAA

Coding sequence (CDS)

ATGGCTTTAGGATGGCTACTTTATTCAGCAGCTCGTCTTCTTGGGAACCCGAATCATGAGGTCCATGGCTACGGTGAAGAGAGGAGCTCAAAAGGGAAAAAGGGTTGTGAAGAAATATGCACTTCTTCTGGGTTTCAAATGCCTCTCCATTACCCTCACTACACCAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGGTGGATCAGCTTCTCAAGGAATATGGCTTGAGCTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTCCTATGGCCTGATCAGTATTAA

Protein sequence

MALGWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY

Homology

[Close]

BLAST of CmaCh03G005860 vs. ExPASy TrEMBL
Match: A0A5D3CP92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005850 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.3e-36
Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MALGWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQ 60
           M L WLL+S + LLGNPN E H YGEERSS GKKG EEIC +SGFQMPLHYP Y K+DYQ
Sbjct: 1   MDLRWLLHSTSYLLGNPN-EAHAYGEERSSTGKKGYEEIC-NSGFQMPLHYPRYKKSDYQ 60

Query: 61  KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
            ME WK+D LLKEYGLSFQGSLEEKRAFAMGAF+WPDQY
Sbjct: 61  NMEGWKLDLLLKEYGLSFQGSLEEKRAFAMGAFIWPDQY 97

[Close]

BLAST of CmaCh03G005860 vs. ExPASy TrEMBL
Match: A0A0A0KMW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MALGWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQ 60
          M L  LL+S + LLGNPN E H YGEERSSKGKKG EE+C +SGFQMPLHYP Y K+DYQ
Sbjct: 1  MDLRGLLHSVSYLLGNPN-EAHAYGEERSSKGKKGYEELC-NSGFQMPLHYPRYKKSDYQ 60

Query: 61 KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
          KMEEWK+D LLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 KMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]

BLAST of CmaCh03G005860 vs. ExPASy TrEMBL
Match: A0A6J1BUU9 (uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005569 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MALGWLLYSAARLLGN----PNHEVHGYGEERSSKGKKGCEEICTS-SGFQMPLHYPHYT 60
           MAL WLL+SA  LL       N  V    EER  KGKKGCEEIC S SGFQMPLHYP Y 
Sbjct: 3   MALKWLLHSACYLLNEVHACANGGVKTSDEERIPKGKKGCEEICNSASGFQMPLHYPRYN 62

Query: 61  KADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
           KADYQKMEEW+VD LL +YG+ F+GSLEEKRAFAMGAFLWPDQ+
Sbjct: 63  KADYQKMEEWEVDLLLNQYGMGFEGSLEEKRAFAMGAFLWPDQF 106

[Close]

BLAST of CmaCh03G005860 vs. ExPASy TrEMBL
Match: A0A061GHA6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030413 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.3e-27
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 1   MALGWLLYSAARLLG-----NPNH------------EVHGYGEERSSKGKKGCEEICTS- 60
           MAL W ++SA  +LG     +PNH            E H  G  RSSK   G E++ T  
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNG-EQVSTQT 60

Query: 61  -----SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPD 100
                SGFQMPLHYP YTKADY+KMEEWKVD LL+EYGLSF+G+L+EKRA+AMGAFLWPD
Sbjct: 61  AEMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPD 120

[Close]

BLAST of CmaCh03G005860 vs. ExPASy TrEMBL
Match: B9SA77 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0863040 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 68/117 (58.12%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MALGWLLYSAARLLGNPNHE--------VHGYGEERSSKG--KKGCE--------EICTS 60
           MAL WLL+SA  +LG PN+E        V GY  E+ + G  K G          E   S
Sbjct: 1   MALRWLLHSACHVLGYPNNEASYRQGSHVLGYPNEQHANGVMKSGKPIAEMEVKMETYPS 60

Query: 61  SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
            GFQ+PLHYP YTK DYQKMEEW+VD LL+EYGLS +G+LEEKRAFAMG FLWPDQY
Sbjct: 61  GGFQLPLHYPRYTKTDYQKMEEWRVDMLLREYGLSIKGTLEEKRAFAMGTFLWPDQY 117

[Close]

BLAST of CmaCh03G005860 vs. NCBI nr
Match: KAG6603827.1 (hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034009.1 hypothetical protein SDJN02_03735, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 8.9e-52
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MALGWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQ 60
           MALGWLLYSAARLLGNPNHEVHGYGEERSSKG+KGCEEICTSSGFQMPLHYPHYTKADYQ
Sbjct: 1   MALGWLLYSAARLLGNPNHEVHGYGEERSSKGEKGCEEICTSSGFQMPLHYPHYTKADYQ 60

Query: 61  KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
           KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY
Sbjct: 61  KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 99

[Close]

BLAST of CmaCh03G005860 vs. NCBI nr
Match: TYK12988.1 (uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 6.9e-36
Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 1   MALGWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQ 60
           M L WLL+S + LLGNPN E H YGEERSS GKKG EEIC +SGFQMPLHYP Y K+DYQ
Sbjct: 1   MDLRWLLHSTSYLLGNPN-EAHAYGEERSSTGKKGYEEIC-NSGFQMPLHYPRYKKSDYQ 60

Query: 61  KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
            ME WK+D LLKEYGLSFQGSLEEKRAFAMGAF+WPDQY
Sbjct: 61  NMEGWKLDLLLKEYGLSFQGSLEEKRAFAMGAFIWPDQY 97

[Close]

BLAST of CmaCh03G005860 vs. NCBI nr
Match: XP_011658113.1 (uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical protein Csa_003579 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MALGWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQ 60
          M L  LL+S + LLGNPN E H YGEERSSKGKKG EE+C +SGFQMPLHYP Y K+DYQ
Sbjct: 1  MDLRGLLHSVSYLLGNPN-EAHAYGEERSSKGKKGYEELC-NSGFQMPLHYPRYKKSDYQ 60

Query: 61 KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
          KMEEWK+D LLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 KMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

[Close]

BLAST of CmaCh03G005860 vs. NCBI nr
Match: XP_038882557.1 (uncharacterized protein LOC120073788 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 5.8e-35
Identity = 78/99 (78.79%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1   MALGWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQ 60
           MAL WLL+S + LLGNP   +   GEE SSKGK G EEICT SGFQMPLHYP Y KADYQ
Sbjct: 1   MALRWLLHSTSYLLGNP---IEARGEESSSKGKNGYEEICT-SGFQMPLHYPRYNKADYQ 60

Query: 61  KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
           KMEEWK+D LLKEYGLSFQGSLEEKRAFA+GAFLWPDQY
Sbjct: 61  KMEEWKLDLLLKEYGLSFQGSLEEKRAFAIGAFLWPDQY 95

[Close]

BLAST of CmaCh03G005860 vs. NCBI nr
Match: XP_022132797.1 (uncharacterized protein LOC111005569 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 3.9e-31
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MALGWLLYSAARLLGN----PNHEVHGYGEERSSKGKKGCEEICTS-SGFQMPLHYPHYT 60
           MAL WLL+SA  LL       N  V    EER  KGKKGCEEIC S SGFQMPLHYP Y 
Sbjct: 3   MALKWLLHSACYLLNEVHACANGGVKTSDEERIPKGKKGCEEICNSASGFQMPLHYPRYN 62

Query: 61  KADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY 100
           KADYQKMEEW+VD LL +YG+ F+GSLEEKRAFAMGAFLWPDQ+
Sbjct: 63  KADYQKMEEWEVDLLLNQYGMGFEGSLEEKRAFAMGAFLWPDQF 106

[Close]

BLAST of CmaCh03G005860 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 6.9e-18
Identity = 36/56 (64.29%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 43  SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
           SGFQ+PLHYP Y+K+DY+ M++ ++D LLK+YG SF+GSLE+KR FA+ +FLWPDQ
Sbjct: 45  SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQ 100

[Close]

BLAST of CmaCh03G005860 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 42 SSGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 99
          SS FQ+PLHYP YTK+DY+KM EW++D+LL+EYGL   G   EKR FA+GAFLW  +
Sbjct: 42 SSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]

BLAST of CmaCh03G005860 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-16
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 4  GWLLYSAARLLGNPNHEVHGYGEERSSKGKKGCEEICTSSGFQMPLHYPHYTKADYQKME 63
          GWLL          N   H   +E      K       SSGF+MPLHYP YTK DY++ME
Sbjct: 5  GWLL----------NFLNHAKNQESVENLDKNGAVKAPSSGFKMPLHYPRYTKEDYEEME 64

Query: 64 EWKVDQLLKEYGL--SFQGSLEEKRAFAMGAFLWP 97
          EW++D LL EYGL      +L EKRAFA+  F+WP
Sbjct: 65 EWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of CmaCh03G005860 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-15
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 43 SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLW 96
          S F+MPLHYP Y+K DYQ M EWK+D++L +YGLS  G L  KR FA+GAFLW
Sbjct: 30 SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]

BLAST of CmaCh03G005860 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 43  SGFQMPLHYPHYTKADYQKMEEWKVDQLLKEYGLSFQ-GSLEEKRAFAMGAFLW 96
           S FQMPL YP+Y K  Y  M E ++D+LLK YGL    G+L  K+ FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:

BLAST of CmaCh03G005860 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh03G005860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CP92	3.3e-36	78.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KMW8	1.3e-35	79.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1	[more]
A0A6J1BUU9	1.9e-31	70.19	uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A061GHA6	6.3e-27	57.38	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030413 PE=4 SV=1	[more]
B9SA77	1.4e-26	58.12	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0863040 PE=4 SV=1	[more]

BLAST of CmaCh03G005860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603827.1	8.9e-52	98.99	hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK12988.1	6.9e-36	78.79	uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa]	[more]
XP_011658113.1	2.6e-35	79.59	uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical ...	[more]
XP_038882557.1	5.8e-35	78.79	uncharacterized protein LOC120073788 [Benincasa hispida]	[more]
XP_022132797.1	3.9e-31	70.19	uncharacterized protein LOC111005569 [Momordica charantia]	[more]

BLAST of CmaCh03G005860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55620.1	6.9e-18	64.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41761.1	1.0e-16	63.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G09950.1	3.8e-16	46.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G55570.1	5.5e-15	64.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G11405.1	1.5e-09	55.56	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513:SF2	SUBFAMILY NOT NAMED	coord: 2..99
None	No IPR available	PANTHER	PTHR33513	OS06G0523300 PROTEIN	coord: 2..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G005860.1	CmaCh03G005860.1	mRNA