CmaCh03G004260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G004260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 4535724 .. 4537801 (-)
RNA-Seq ExpressionCmaCh03G004260
SyntenyCmaCh03G004260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATCACTGAAACGTCGTCGTGGTACTTCCGCCGCTCCCCTTGTGGGATATCAAGCAGCTCATGGAAGGCCATTCCTGCATGTTTTCCAAATCACATCAGTAAGTAAAGTTCATACTCCTAACATATATGCTGTATTTGTTTCTTTTCTTTTATCTTCCTTTCTTGTTTCTTACCATATTTTTTAGCTGCTCGGAACAATACTTCTTCAATGAGATTTTGAGCAGGATCTCCTTCAGGGAAAGAAGCAATGAAGGACTCTACTTGAGCAACAGCTTCTTCATTTGTAAAGTATTGATAGAGTCCATCAGACGACAATATCAAGAATCTGTCAGTTGGGCTGAGTTTATAATGGCACAGAGTTGGATCACAGGTGATGTAAGGTGAATTTCCCACATAGTCTATTCTGAACATCTCTAGCAATGCGTCATTCCACTTTGGCTGCAAAACACTCATTTCATCAGTACCATATTTGTCTTACATTCTAGCAGACTACAAGGTTTGGAAATTTGGAAAGACCTGTTTCAGAAAGCCAGCACCAAACGCCCGTGTGATTTTCAAATAACCTTTCACCCTGTCATTCATAATTGCTGAAGGGTCGTCAGAATGAGCATTCTTGATCCTCTGAACTTCCTGATGATATTCAAGTTCTCTCATAAATGCATGTAATCTAAATGCAGTGCTTAGTGGAAGATGAGTGATATTGACAAGAACATTACCTCCTCTGTGTACGTGCTGTGGTCCATCGTAAGCTGATGGGAAGCTAAGGCTGTTAATCTTTCAGGGGATTCTAATACCCGTAGTGTTCCTTCATTGATTCTCTCCAAGTCTCTGTATGGTTCGAGTTGCTGCGCTACAATTGCACGGCTGTCTCCTACATTCATCAGGTACACATCTTCTCCTCTCATTAACATAACCAAAACACAAGAACCCATTAGAGCTAGCTCAGGATTTCTTGTGGCCATCTTGTCTGCATTCTGCAGATATGATTCCTCTGTTTTTTTCAATGCTTCAGATAGAGCATTCAACACCTCAGAATGATTGATTGTTGTTGATTCATCCCATATGTTGTGGTGATCTAATCCTATGCTTTCCCTTTCCCTTTCCCATTTCCAATTCTCTGGATCCTGATCGCCCTTCTTCATCAGCTGTCTCGTCCTATTTTCTGCCGAAAAGTTCACTGTAGGTTGATGAACATTAGCCTGAGTTTTTATGTGGGTTGTTCCATGATCGTCTTCCTCAATTAAAGCAGAGTTGGATGAGTTCATGGAAGACGTGGTTGCAGTTGAATCCAACTTATCATTCCATATCAAACCCTTGAGCTCTTTGAGAACGGCAGTGTAGAGATTAGCGAGTAAGTAATCAGGAGCATCAGGCCCGTTGAATCCATCATAAACTCCGACAAAAACCCAACCATTTTCCTCCAATATCACCACGTGAACTCTATCCTCGCCGGCCTTCCCCTGTGCCCACTGTACGCCCTGACCGCCGACAAAGTAATCGCCATCGTCTTCCTGCGCCAAACTGGCGTGGCTGCTCAAATGAACACTGCTTTGAGTCTGAGCTGCATTCTCATGTTTGTATGAACTCGCAGCCTTCTGGTTTCGAGAAATGGTTTTGGATATGGCTCTCTTCAGAATCCGAATGAGACTTCTTCTTTTCGATTTCGGTTGTCTATCTCCAACGCCGCCGTTAGAGACGCTTCTCTGCAATTTCTCAGGTCCGCCGCCCTTCTCAATCGAGCCGGAGTAAACCACTCGATCTATCGGGCACGATTCGATGCTCCGGGCGGCCAAGGGTCCGGATAAGAACCCTCTCTCCATTGGACCCGAAGAAGGGTTTCCACCGAAATTTCCCGACATCGAGTGGCGTGGCACCGGCTGTAACGGCACAGAGGCAAAGGAATTCGAGCAATCGAAAGCAGCGGCCCGATCAAACGTGGTGCTATAAGGATATAGATCGACCAGAGACGTGGACAGCGGCGTTGAGACGTTGGCGCTTACAGAGGCGCCGGAAATCGACCGGAAAATGGTCGCTGGAGAGATGTAGTCTTCGGGGAAAGCTTTGAAGGAGGAG

mRNA sequence

ATGATGATCACTGAAACGTCGTCGTGGTACTTCCGCCGCTCCCCTTGTGGGATATCAAGCAGCTCATGGAAGGCCATTCCTGCATGTTTTCCAAATCACATCAGTAACTGCTCGGAACAATACTTCTTCAATGAGATTTTGAGCAGGATCTCCTTCAGGGAAAGAAGCAATGAAGGACTCTACTTGAGCAACAGCTTCTTCATTTGTAAAGTATTGATAGAGTCCATCAGACGACAATATCAAGAATCTGTCAGTTGGGCTGAGTTTATAATGGCACAGAGTTGGATCACAGACTACAAGGTTTGGAAATTTGGAAAGACCTGTTTCAGAAAGCCAGCACCAAACGCCCGTGTGATTTTCAAATAACCTTTCACCCTGTCATTCATAATTGCTGAAGGGTCGTCAGAATGAGCATTCTTGATCCTCTGAACTTCCTGATGATATTCAAGTTCTCTCATAAATGCATGTAATCTAAATGCAGTGCTTAGTGGAAGATGAGTGATATTGACAAGAACATTACCTCCTCTGTGTACGTGCTGTGGTCCATCGTAAGCTGATGGGAAGCTAAGGCTGTTAATCTTTCAGGGGATTCTAATACCCGTAGTGTTCCTTCATTGATTCTCTCCAAGTCTCTGTATGGTTCGAGTTGCTGCGCTACAATTGCACGGCTGTCTCCTACATTCATCAGATAGAGCATTCAACACCTCAGAATGATTGATTGTTGTTGATTCATCCCATATGTTGTGGTGATCTAATCCTATGCTTTCCCTTTCCCTTTCCCATTTCCAATTCTCTGGATCCTGATCGCCCTTCTTCATCAGCTGTCTCGTCCTATTTTCTGCCGAAAAGTTCACTGTAGGTTGATGAACATTAGCCTGAGTTTTTATGTGGGTTGTTCCATGATCGTCTTCCTCAATTAAAGCAGAGTTGGATGAGTTCATGGAAGACGTGGTTGCAGTTGAATCCAACTTATCATTCCATATCAAACCCTTGAGCTCTTTGAGAACGGCAGTGTAGAGATTAGCGAGTAAGTAATCAGGAGCATCAGGCCCGTTGAATCCATCATAAACTCCGACAAAAACCCAACCATTTTCCTCCAATATCACCACGTGAACTCTATCCTCGCCGGCCTTCCCCTGTGCCCACTGTACGCCCTGACCGCCGACAAAGTAATCGCCATCGTCTTCCTGCGCCAAACTGGCGTGGCTGCTCAAATGAACACTGCTTTGAGTCTGAGCTGCATTCTCATGTTTGTATGAACTCGCAGCCTTCTGGTTTCGAGAAATGGTTTTGGATATGGCTCTCTTCAGAATCCGAATGAGACTTCTTCTTTTCGATTTCGGTTGTCTATCTCCAACGCCGCCGTTAGAGACGCTTCTCTGCAATTTCTCAGGTCCGCCGCCCTTCTCAATCGAGCCGGAGTAAACCACTCGATCTATCGGGCACGATTCGATGCTCCGGGCGGCCAAGGGTCCGGATAAGAACCCTCTCTCCATTGGACCCGAAGAAGGGTTTCCACCGAAATTTCCCGACATCGAGTGGCGTGGCACCGGCTGTAACGGCACAGAGGCAAAGGAATTCGAGCAATCGAAAGCAGCGGCCCGATCAAACGTGGTGCTATAAGGATATAGATCGACCAGAGACGTGGACAGCGGCGTTGAGACGTTGGCGCTTACAGAGGCGCCGGAAATCGACCGGAAAATGGTCGCTGGAGAGATGTAGTCTTCGGGGAAAGCTTTGAAGGAGGAG

Coding sequence (CDS)

ATGATGATCACTGAAACGTCGTCGTGGTACTTCCGCCGCTCCCCTTGTGGGATATCAAGCAGCTCATGGAAGGCCATTCCTGCATGTTTTCCAAATCACATCAGTAACTGCTCGGAACAATACTTCTTCAATGAGATTTTGAGCAGGATCTCCTTCAGGGAAAGAAGCAATGAAGGACTCTACTTGAGCAACAGCTTCTTCATTTGTAAAGTATTGATAGAGTCCATCAGACGACAATATCAAGAATCTGTCAGTTGGGCTGAGTTTATAATGGCACAGAGTTGGATCACAGACTACAAGGTTTGGAAATTTGGAAAGACCTGTTTCAGAAAGCCAGCACCAAACGCCCGTGTGATTTTCAAATAA

Protein sequence

MMITETSSWYFRRSPCGISSSSWKAIPACFPNHISNCSEQYFFNEILSRISFRERSNEGLYLSNSFFICKVLIESIRRQYQESVSWAEFIMAQSWITDYKVWKFGKTCFRKPAPNARVIFK
Homology
[Close]
BLAST of CmaCh03G004260 vs. NCBI nr
Match: KAG7033837.1 (hypothetical protein SDJN02_03562, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 26  IPACFPNHISNCSEQYFFNEILSRISFRERSNEGLYLSNSFFICKVLIESIRRQYQESVS 85
           +P  F     +CS+QYFFNEILSRISFRERSNEGLYLSNSFFICKVLIESIRRQYQESV 
Sbjct: 10  LPFLFLTIFFSCSKQYFFNEILSRISFRERSNEGLYLSNSFFICKVLIESIRRQYQESVG 69

Query: 86  WAEFIMAQSWITDYKVWKFGKTC 109
           WAEFIMAQSWIT      +G +C
Sbjct: 70  WAEFIMAQSWITGDVRSLYGSSC 92

The following BLAST results are available for this feature:
BLAST of CmaCh03G004260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G004260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G004260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033837.11.0e-2575.90hypothetical protein SDJN02_03562, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh03G004260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G004260.1CmaCh03G004260.1mRNA