CmaCh03G003600 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G003600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cma_Chr03: 4245551 .. 4247657 (-)
RNA-Seq Expression	CmaCh03G003600
Synteny	CmaCh03G003600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCAACCACAAATCTGCGACACAAAATCAAGTGAAACGACGACGCATTGACCCCACCGTTCCAGTACGACAGGATAAGGCAGAGATAAGGCTAGGACGCACACAAGCCGTCAGATGCGTTCATCCAATAATCCAACGGATATAAAACCACGCAACAGATTATGTGGCTCTTGCCGATCACAAGCCCCCTCTCTCAGCCACATAACAACCCAACCAGAATCCCAAATCCCATCTCACACTCTTCAATTCCCCTCTCAACTCATCGTCGCAATGGCCACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGTTGACGTGCGGCCGAGTTCCGGCCGAGTCCAAGCCCGATTCGGATTCGGTAAGAAAAAAGCTCCGGCAAAGAAATCGCCATCGTCGAAGACGATATCCGACCGTCCACTGTGGTTTCCGGGAGCCAAGGCCCCGGAATGGCTGGACGGAAGCTTGGTTGGCGACTACGGATTCGATCCGTTCGGGCTGGGGAAACCGGCAGAGTATTTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATAATCGGGACGAGATTTGAGAACGCGGACGTGAAATCGACGCCGTTTCAGCCGTACTCGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTGATCCATGGAAGATGGGCGATGTTGGCCACACTCGGCGCTCTCGCCGTTGAAGGCCTCACTGGTATCACTTGGCAAGACGCCGGAAAGGTGAGTTTCTTTTTTTCTTTTTATCTTTTTTTTTTTTTTGCATTTTTTCTTTCAATTAGTAATATAATATTAATTTAGTCCTTTCAATTTTGATTCATTTTTATTTTATATAAAATAAATATATGACTGGTTTAATTTTTTTAAAAGCTTTTATTTATCCTTTTTTATAATAGTGAATTATTTTTTAAAAAAATTAAGGAGAAATTAGTCTCTCTTCTTTTATATTTAGTTGGCCATTCACCTGATTTAAAGATATTTTTTTTATTATATATATTCTTAGAATTAACAATTTATTCTCATTTAATTTTATATTTTCAATTTTTAATAATTTAATTGGTCAAAAATTGATTAATAAATCTAAATAATTAACCTTTAATTTTTTATGAAATTTATCCATAGAATTAAATTGTTACAAATTTAAAAATAATAATAATTTATCGTGAAATTTAGAGACTAAAAATTATAATTAACTCGCATTTACGTACTAAATAATTTAATTTTTATGGTAAAAATTGATTTAAAAATCACTAAATATGTTTATAAATTTTAAAATTTAAGTTCTAAATTGTCGTGAAATTTAGAGATTAAAAATTGGTGATTTAATTTAATATTCCATAGTTTCCTAAATTTATAAATGTATTAAAAATTTGAGACATTAATTTTTTTTTTAGATTTAATAAAAAAAAAATTAAAAGTTTAAAATTGTAATAAAAAGTATTTAAAAATTTATATAAAATATGCAGGTAGAATTAGTGGAAGGTTCGTCGTACCTTGGGCAGCCGCTGCCCTTCTCCCTGACCACGCTGATCTGGATCGAGGTTCTGGTGATCGGATACATCGAGTTTCAAAGGAACGCCGAGCTGGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTCTTCGACCCCTTGGGCCTAGCCGAGGATCCCGAGAAGAAAGCGGTCCTACAATTGGCGGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTAGGCTTCGCGGTTCAGGCTGCTGTCACTGGCAAAGGCCCCCTCAACAACTGGGCCACCCACCTCAGCGACCCACTCCACACCACCATCATTGACAACTTCTCCTCTTGAACTCTCGAGTTTATGTGTTCATTGTTGTCTTCAAAACTTGACCGAGTTATATGATCTTGAGTTGTAAGTAAGTACGTTGTTGCTTCGAGATTCGATTCGAGTTTATGGGTCGATTGCTGTCTTCCAAACTCGATTGAGTAGTAATGTGATCGTGAGATGTAACTACTTTGCTTTGAAGGTTCATATGTGAAATTATATATTAATTAATAATGTCTTCTACCATACAAAACAAA

mRNA sequence

CCTCAACCACAAATCTGCGACACAAAATCAAGTGAAACGACGACGCATTGACCCCACCGTTCCAGTACGACAGGATAAGGCAGAGATAAGGCTAGGACGCACACAAGCCGTCAGATGCGTTCATCCAATAATCCAACGGATATAAAACCACGCAACAGATTATGTGGCTCTTGCCGATCACAAGCCCCCTCTCTCAGCCACATAACAACCCAACCAGAATCCCAAATCCCATCTCACACTCTTCAATTCCCCTCTCAACTCATCGTCGCAATGGCCACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGTTGACGTGCGGCCGAGTTCCGGCCGAGTCCAAGCCCGATTCGGATTCGGTAAGAAAAAAGCTCCGGCAAAGAAATCGCCATCGTCGAAGACGATATCCGACCGTCCACTGTGGTTTCCGGGAGCCAAGGCCCCGGAATGGCTGGACGGAAGCTTGGTTGGCGACTACGGATTCGATCCGTTCGGGCTGGGGAAACCGGCAGAGTATTTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATAATCGGGACGAGATTTGAGAACGCGGACGTGAAATCGACGCCGTTTCAGCCGTACTCGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTGATCCATGGAAGATGGGCGATGTTGGCCACACTCGGCGCTCTCGCCGTTGAAGGCCTCACTGGTATCACTTGGCAAGACGCCGGAAAGGTAGAATTAGTGGAAGGTTCGTCGTACCTTGGGCAGCCGCTGCCCTTCTCCCTGACCACGCTGATCTGGATCGAGGTTCTGGTGATCGGATACATCGAGTTTCAAAGGAACGCCGAGCTGGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTCTTCGACCCCTTGGGCCTAGCCGAGGATCCCGAGAAGAAAGCGGTCCTACAATTGGCGGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTAGGCTTCGCGGTTCAGGCTGCTGTCACTGGCAAAGGCCCCCTCAACAACTGGGCCACCCACCTCAGCGACCCACTCCACACCACCATCATTGACAACTTCTCCTCTTGAACTCTCGAGTTTATGTGTTCATTGTTGTCTTCAAAACTTGACCGAGTTATATGATCTTGAGTTGTAAGTAAGTACGTTGTTGCTTCGAGATTCGATTCGAGTTTATGGGTCGATTGCTGTCTTCCAAACTCGATTGAGTAGTAATGTGATCGTGAGATGTAACTACTTTGCTTTGAAGGTTCATATGTGAAATTATATATTAATTAATAATGTCTTCTACCATACAAAACAAA

Coding sequence (CDS)

ATGCGTTCATCCAATAATCCAACGGATATAAAACCACGCAACAGATTATGTGGCTCTTGCCGATCACAAGCCCCCTCTCTCAGCCACATAACAACCCAACCAGAATCCCAAATCCCATCTCACACTCTTCAATTCCCCTCTCAACTCATCGTCGCAATGGCCACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACACGCCTCGTTGACGTGCGGCCGAGTTCCGGCCGAGTCCAAGCCCGATTCGGATTCGGTAAGAAAAAAGCTCCGGCAAAGAAATCGCCATCGTCGAAGACGATATCCGACCGTCCACTGTGGTTTCCGGGAGCCAAGGCCCCGGAATGGCTGGACGGAAGCTTGGTTGGCGACTACGGATTCGATCCGTTCGGGCTGGGGAAACCGGCAGAGTATTTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATAATCGGGACGAGATTTGAGAACGCGGACGTGAAATCGACGCCGTTTCAGCCGTACTCGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTGATCCATGGAAGATGGGCGATGTTGGCCACACTCGGCGCTCTCGCCGTTGAAGGCCTCACTGGTATCACTTGGCAAGACGCCGGAAAGGTAGAATTAGTGGAAGGTTCGTCGTACCTTGGGCAGCCGCTGCCCTTCTCCCTGACCACGCTGATCTGGATCGAGGTTCTGGTGATCGGATACATCGAGTTTCAAAGGAACGCCGAGCTGGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTCTTCGACCCCTTGGGCCTAGCCGAGGATCCCGAGAAGAAAGCGGTCCTACAATTGGCGGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTAGGCTTCGCGGTTCAGGCTGCTGTCACTGGCAAAGGCCCCCTCAACAACTGGGCCACCCACCTCAGCGACCCACTCCACACCACCATCATTGACAACTTCTCCTCTTGA

Protein sequence

MRSSNNPTDIKPRNRLCGSCRSQAPSLSHITTQPESQIPSHTLQFPSQLIVAMATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS

Homology

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BLAST of CmaCh03G003600 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 6.4e-137
Identity = 238/289 (82.35%), Postives = 257/289 (88.93%), Query Frame = 0


Query: 51  VAMATATAAATSSFIGTRLV-DVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFP 110
           +A  +A AAA SS +GTR+   + P SGR  A FGFGKKKA  KKS      +DRPLW+P
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYP 60

Query: 111 GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVK 170
           GA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E AD K
Sbjct: 61  GAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAK 120

Query: 171 STPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYL 230
           STPFQPYSEVFG+QRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELV+GSSYL
Sbjct: 121 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180

Query: 231 GQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQL 290
           GQPLPFS++TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPEK A LQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQL 240

Query: 291 AEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           AEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289

[Close]

BLAST of CmaCh03G003600 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 2.1e-135
Identity = 239/286 (83.57%), Postives = 257/286 (89.86%), Query Frame = 0


Query: 54  ATATAAATSSFIGTRLV-DVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 113
           AT+TAAA SS +GTR+V D+  +S R  ARFGFG KKA  KK+ +   ISDRPLWFPGAK
Sbjct: 3   ATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPGAK 62

Query: 114 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 173
           +PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  D KSTP
Sbjct: 63  SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP 122

Query: 174 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 233
           FQPYSEVFGLQRFRECELIHGRWAMLATLGA+ VE LTG+TWQDAGKVELV+GSSYLGQP
Sbjct: 123 FQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQP 182

Query: 234 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 293
           LPFS++TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEI
Sbjct: 183 LPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEI 242

Query: 294 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 243 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286

[Close]

BLAST of CmaCh03G003600 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.1e-115
Identity = 209/274 (76.28%), Postives = 231/274 (84.31%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFG--FGKKK--APAKKSPSSKTISDRPLWF 112
           MAT TAAA S   G R+ D RP +GRVQARFG  FGKKK   P KKS   +   DR +WF
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWF 60

Query: 113 PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADV 172
           PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   E++++
Sbjct: 61  PGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEI 120

Query: 173 KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSY 232
           K TPFQPY+EVFG+QRFRECELIHGRWAML TLGA+AVE LTGI WQDAGKVELVEGSSY
Sbjct: 121 KPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSY 180

Query: 233 LGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQ 292
           LGQPLPFSLTTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+
Sbjct: 181 LGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLK 240

Query: 293 LAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT 323
           LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 241 LAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

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BLAST of CmaCh03G003600 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 252.3 bits (643), Expect = 7.8e-66
Identity = 131/225 (58.22%), Postives = 157/225 (69.78%), Query Frame = 0


Query: 106 LWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEN 165
           LW P    PEWLDGSL GD GFDP GL KP+E++   +D  DQN AKN  G +       
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV------E 111

Query: 166 ADVKSTP--------FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDA 225
           A V++TP          PYSEVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +A
Sbjct: 112 AIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA 171

Query: 226 GKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGL 285
           GKVEL +G+SY G  LPFS+T LIWIEV+++G  EF RN+E +PEKR YPGG  FDPL L
Sbjct: 172 GKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKL 231

Query: 286 AEDPEKKAV-LQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWA 322
           A + E++A  L+ AEIKHARLAMV+F G+ VQA  TG+G L + A
Sbjct: 232 ASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268

[Close]

BLAST of CmaCh03G003600 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-39
Identity = 98/233 (42.06%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 107 WFPGAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAGDIIGTRFEN 166
           W PG   P +LDGS  GD+GFDP GLG+ PA                             
Sbjct: 48  WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA----------------------------- 107

Query: 167 ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEG 226
                           L+R++E ELIH RWAMLA  G L  E L    W  A +   + G
Sbjct: 108 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 167

Query: 227 --SSYLGQPLPF-SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPE 286
             ++YLG P+P+ +L T++ IE L I ++E QR+ E DPEK+ YPGG  FDPLG ++DP+
Sbjct: 168 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPK 227

Query: 287 KKAVLQLAEIKHARLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 335
           K   L++ EIK+ RLA++AF+GF V Q+A  G GPL N ATHL+DP H  I D
Sbjct: 228 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of CmaCh03G003600 vs. ExPASy TrEMBL
Match: A0A6J1IPG0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478268 PE=3 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 6.0e-162
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 112
           MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK
Sbjct: 1   MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 60

Query: 113 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 172
           APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP
Sbjct: 61  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 120

Query: 173 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 232
           FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP
Sbjct: 121 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 180

Query: 233 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 292
           LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 240

Query: 293 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of CmaCh03G003600 vs. ExPASy TrEMBL
Match: A0A6J1GFC4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111453669 PE=3 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.1e-160
Identity = 284/286 (99.30%), Postives = 285/286 (99.65%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 112
           MATATAAATSSFIGTRLVDVRPSS RVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK
Sbjct: 1   MATATAAATSSFIGTRLVDVRPSSARVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 60

Query: 113 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 172
           APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+ADVKSTP
Sbjct: 61  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESADVKSTP 120

Query: 173 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 232
           FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP
Sbjct: 121 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 180

Query: 233 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 292
           LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 240

Query: 293 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of CmaCh03G003600 vs. ExPASy TrEMBL
Match: A0A5D3BBB3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00840 PE=3 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 6.0e-154
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 56  ATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 115
           ATAAATSSFIGTRL ++ PSSGRVQARFGFGKKK+P KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 116 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQP 175
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+A+VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 176 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 235
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 236 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 295
           SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 296 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of CmaCh03G003600 vs. ExPASy TrEMBL
Match: A0A1S3BMH8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491174 PE=3 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 6.0e-154
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 56  ATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 115
           ATAAATSSFIGTRL ++ PSSGRVQARFGFGKKK+P KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 116 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQP 175
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+A+VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 176 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 235
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 236 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 295
           SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 296 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of CmaCh03G003600 vs. ExPASy TrEMBL
Match: A0A0A0KXI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G308550 PE=3 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 1.0e-153
Identity = 268/283 (94.70%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 56  ATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 115
           ATAAATSSF+GTRL ++ PSSGRVQARFGFGKKK+P KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPE 61

Query: 116 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQP 175
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+A+VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 176 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 235
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 236 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 295
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 296 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of CmaCh03G003600 vs. NCBI nr
Match: XP_022978220.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 580.1 bits (1494), Expect = 1.2e-161
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 112
           MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK
Sbjct: 1   MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 60

Query: 113 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 172
           APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP
Sbjct: 61  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 120

Query: 173 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 232
           FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP
Sbjct: 121 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 180

Query: 233 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 292
           LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 240

Query: 293 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of CmaCh03G003600 vs. NCBI nr
Match: XP_022950626.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 575.9 bits (1483), Expect = 2.3e-160
Identity = 284/286 (99.30%), Postives = 285/286 (99.65%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 112
           MATATAAATSSFIGTRLVDVRPSS RVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK
Sbjct: 1   MATATAAATSSFIGTRLVDVRPSSARVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 60

Query: 113 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 172
           APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+ADVKSTP
Sbjct: 61  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESADVKSTP 120

Query: 173 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 232
           FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP
Sbjct: 121 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 180

Query: 233 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 292
           LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 240

Query: 293 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of CmaCh03G003600 vs. NCBI nr
Match: KAG6603594.1 (Chlorophyll a-b binding protein CP29.2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 574.7 bits (1480), Expect = 5.2e-160
Identity = 283/286 (98.95%), Postives = 285/286 (99.65%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 112
           MATATAAATSSFIGTRLVDVRPSS RVQARFGFGKKKAPAKKSPSS+TISDRPLWFPGAK
Sbjct: 1   MATATAAATSSFIGTRLVDVRPSSARVQARFGFGKKKAPAKKSPSSRTISDRPLWFPGAK 60

Query: 113 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 172
           APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+ADVKSTP
Sbjct: 61  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESADVKSTP 120

Query: 173 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 232
           FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP
Sbjct: 121 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 180

Query: 233 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 292
           LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 240

Query: 293 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of CmaCh03G003600 vs. NCBI nr
Match: XP_023544706.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573.9 bits (1478), Expect = 8.9e-160
Identity = 283/286 (98.95%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 112
           MATATAAATSSFIGTRLVDVRPSS RVQARFGFGKKKAPAKKSP SKTISDRPLWFPGAK
Sbjct: 1   MATATAAATSSFIGTRLVDVRPSSARVQARFGFGKKKAPAKKSPPSKTISDRPLWFPGAK 60

Query: 113 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 172
           APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+ADVKSTP
Sbjct: 61  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESADVKSTP 120

Query: 173 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 232
           FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP
Sbjct: 121 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 180

Query: 233 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 292
           LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI
Sbjct: 181 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 240

Query: 293 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 241 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of CmaCh03G003600 vs. NCBI nr
Match: XP_038882769.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 554.3 bits (1427), Expect = 7.3e-154
Identity = 269/283 (95.05%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 56  ATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAPE 115
           ATAAATSSFIGTRL ++RP SGRVQARFGFGKKK+P KKSPSSKTISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAELRPCSGRVQARFGFGKKKSPPKKSPSSKTISDRPLWFPGAKAPE 61

Query: 116 WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQP 175
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+A+VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 176 YSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLPF 235
           Y+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 236 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 295
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKK VLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKVVLQLAEIKHA 241

Query: 296 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of CmaCh03G003600 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 488.4 bits (1256), Expect = 4.6e-138
Identity = 238/289 (82.35%), Postives = 257/289 (88.93%), Query Frame = 0


Query: 51  VAMATATAAATSSFIGTRLV-DVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFP 110
           +A  +A AAA SS +GTR+   + P SGR  A FGFGKKKA  KKS      +DRPLW+P
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYP 60

Query: 111 GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVK 170
           GA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E AD K
Sbjct: 61  GAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAK 120

Query: 171 STPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYL 230
           STPFQPYSEVFG+QRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELV+GSSYL
Sbjct: 121 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180

Query: 231 GQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQL 290
           GQPLPFS++TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPEK A LQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQL 240

Query: 291 AEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           AEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289

[Close]

BLAST of CmaCh03G003600 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 483.4 bits (1243), Expect = 1.5e-136
Identity = 239/286 (83.57%), Postives = 257/286 (89.86%), Query Frame = 0


Query: 54  ATATAAATSSFIGTRLV-DVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 113
           AT+TAAA SS +GTR+V D+  +S R  ARFGFG KKA  KK+ +   ISDRPLWFPGAK
Sbjct: 3   ATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPGAK 62

Query: 114 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 173
           +PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  D KSTP
Sbjct: 63  SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP 122

Query: 174 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 233
           FQPYSEVFGLQRFRECELIHGRWAMLATLGA+ VE LTG+TWQDAGKVELV+GSSYLGQP
Sbjct: 123 FQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQP 182

Query: 234 LPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEI 293
           LPFS++TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEI
Sbjct: 183 LPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEI 242

Query: 294 KHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 339
           KHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 243 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286

[Close]

BLAST of CmaCh03G003600 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 417.9 bits (1073), Expect = 7.6e-117
Identity = 209/274 (76.28%), Postives = 231/274 (84.31%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFG--FGKKK--APAKKSPSSKTISDRPLWF 112
           MAT TAAA S   G R+ D RP +GRVQARFG  FGKKK   P KKS   +   DR +WF
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWF 60

Query: 113 PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADV 172
           PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   E++++
Sbjct: 61  PGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEI 120

Query: 173 KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSY 232
           K TPFQPY+EVFG+QRFRECELIHGRWAML TLGA+AVE LTGI WQDAGKVELVEGSSY
Sbjct: 121 KPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSY 180

Query: 233 LGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQ 292
           LGQPLPFSLTTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+
Sbjct: 181 LGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLK 240

Query: 293 LAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT 323
           LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 241 LAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of CmaCh03G003600 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 268.5 bits (685), Expect = 7.5e-72
Identity = 136/183 (74.32%), Postives = 152/183 (83.06%), Query Frame = 0


Query: 54  ATATAAATSSFIGTRLV-DVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAK 113
           AT+TAAA SS +GTR+V D+  +S R  ARFGFG KKA  KK+ +   ISDRPLWFPGAK
Sbjct: 3   ATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPGAK 62

Query: 114 APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTP 173
           +PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  D KSTP
Sbjct: 63  SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP 122

Query: 174 FQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQP 233
           FQPYSEVFGLQRFRECELIHGRWAMLATLGA+ VE LTG+TWQDAGKV  +  SS L   
Sbjct: 123 FQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRLC 182

Query: 234 LPF 236
           L F
Sbjct: 183 LAF 183

[Close]

BLAST of CmaCh03G003600 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 256.1 bits (653), Expect = 3.8e-68
Identity = 126/173 (72.83%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 53  MATATAAATSSFIGTRLVDVRPSSGRVQARFG--FGKKK--APAKKSPSSKTISDRPLWF 112
           MAT TAAA S   G R+ D RP +GRVQARFG  FGKKK   P KKS   +   DR +WF
Sbjct: 1   MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWF 60

Query: 113 PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADV 172
           PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   E++++
Sbjct: 61  PGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEI 120

Query: 173 KSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVE 222
           K TPFQPY+EVFG+QRFRECELIHGRWAML TLGA+AVE LTGI WQDAGKVE
Sbjct: 121 KPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of CmaCh03G003600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	6.4e-137	82.35	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	2.1e-135	83.57	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	1.1e-115	76.28	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	7.8e-66	58.22	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	3.6e-39	42.06	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CmaCh03G003600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPG0	6.0e-162	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GFC4	1.1e-160	99.30	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3BBB3	6.0e-154	95.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BMH8	6.0e-154	95.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KXI3	1.0e-153	94.70	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of CmaCh03G003600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978220.1	1.2e-161	100.00	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022950626.1	2.3e-160	99.30	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata]	[more]
KAG6603594.1	5.2e-160	98.95	Chlorophyll a-b binding protein CP29.2, chloroplastic, partial [Cucurbita argyro...	[more]
XP_023544706.1	8.9e-160	98.95	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita pepo subsp...	[more]
XP_038882769.1	7.3e-154	95.05	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of CmaCh03G003600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	4.6e-138	82.35	light harvesting complex photosystem II	[more]
AT3G08940.2	1.5e-136	83.57	light harvesting complex photosystem II	[more]
AT2G40100.1	7.6e-117	76.28	light harvesting complex photosystem II	[more]
AT3G08940.1	7.5e-72	74.32	light harvesting complex photosystem II	[more]
AT2G40100.2	3.8e-68	72.83	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 113..309 e-value: 1.2E-50 score: 172.2
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 107..338 e-value: 7.4E-70 score: 236.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 54..338
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 98..336
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 54..338

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G003600.1	CmaCh03G003600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding