CmaCh03G003500 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G003500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein root UVB sensitive 5 isoform X2
Location	Cma_Chr03: 4192324 .. 4194962 (+)
RNA-Seq Expression	CmaCh03G003500
Synteny	CmaCh03G003500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGATAATGTAAAGAACAGTGTTGATCGTGCAGGTACGAGATCTTTATTTTTGTTCCCCTACATTCTTCTGTTCTGTTATCTTGAAAACTGGTGGATATTAATGGATGAAGAGAAGTTGAGCGTAGTTCTGTATGTGATGTGTCGTTGCTTCTTGAAATGTTTCAAGTTTTTTGAAGTCTTGATCAATTTCTTTCCATACTGAGCGGAAAATGTCCGAGACGAAATGTCTTAATATCTCAAGAGGCGAAAGAAAATATCGATTTAGAGGAAGCGGTGATTGTTTCTCTGCTAGTGATAATGCTTTCGGTGTTATTCCATCTGATTGTATTACTTTTTCCTTGTGTTTCTTGTTACAGAGTACACGGCCAGCGGTGAGTAATTTTTTTCGAGAAGTACGGAAATGGCGCTGAGAAGAAGTCGGTGATGTTTGCCTTAGAATTCATTTTTTACCTAACCATTTCTCGAGTTCATCTTTCCAAATTCTTATAGTAGATATAATGTATTCTTGTTCGTATTGCTATGGTTTTGCTAATATCACTCCACTGAAGCAATCTATATGCTAGATCCATTTTATGTGAATTAAAAATTTGCCTTAAACTTCCTGAGGATAGATAGAGGTTCACATTTCTTTTAGGAAAAAGCTGATGGTTGAGATAATTAACGATCAGTATTCAGCACAGTATGTAGACTTTTAGAACTGGTATACCGTTTTCTGCTTCCTATAGCTACAATAAGAGTTTCATTTTGGGAAATTTGATTCCATGAACAGGTATTTTCTAGATGATAACTACGTTTGCAATCTGTTTTTGATGAACAAACATCTCCGACATCCAATGGTCTCAAAGTATCTCATTTGTTGGAAACTAAATTATCCTGGCTTCCAGATATCATTCAAGATTTTATCTTGCCCAAGGGTGTTGAGGATTGTTGAAAGGGAGTCCACACTGGATAATTTAGGGAATGATCATGGGTTTGTAGGTAAGGAATACATCTTCATTGGTATGAGGCATTTTGGGGAAGTCAAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGATAGTCGTGATTCTTAACATGATACCTAATGTGCGTGGACTTTTTTTCTTTCTCACTTTTACCGTTAACATTTCTTCATTGAACTTTTTTGTTACGTGATGTTTTCCAAGCTAGAATATTTGGGAATATTTGGGTTCTAGTTGATTCATACAACTAGATGTATCCCGTTTTACTTATTTAATTTTTCTACAATAATCTTGTACTCCCAACGATCAGGATTTTTCCAGTACTTCTAGGTTTTCCTCTTCCCTCTTTTGATTCCCATCAGTTAGAAATTGTTCTGTCATGTGAAAAAGAGTAGAAAATATGAAAAGGACAATTGGATTATCCCTTTTTGAATCCAAGCAACCTCAAGGAGATTATAAAGAAGCTTTTCAATTGTAATGAATCATAAATTGGAAACGTTGTATGGGTGTACACCGACTAGAAGATAGAAAAGAAACCGTAAACTTTTTATGAGCATGTACTTTTGTTTGTCATATGGATTACAGCCAAGAGTTCATATCATATAGCCAATGAGCATTTTGGATATGACCAACCTGTGACAAAAACATCCATTAATGTTTGCTCAAGTTGTTTGTAGCTATACAGCCAGATGATCGGCCTTTCCAGGAGAGAGAAACAATAGGATCTTTAGAAGGGTGAGCAAGACGGTAGGGATGTTTGGTCCCTGGCTAGATTCTTTGTTTTCTTTTGGGCGTCGGTGTCAAATTCCTTTTGTTATTTATCCGCTCACATTTTGCTCGATTGGGGTTCCTTAATGGGAATGCCTCTTTTTGTTGGCTTGGTTATTTTGGATGTCTTTGTATTTATCTTCTTTTTTTCTCAATGAAAGTATGGTGGATTATCAGAAAAAATGATCGATAAAGTAATATCTCAATTTCTTTTTTCAGGCAGGATCTAGTTATACCTGCCATCTTACTTTTATATAATTTTCATTGCAGAATCAGTTTCAGACAACTACTTGCGGTACATGATACTGCCTCCCCACTAATATTGTTGGATGGATGTGTCACGCGTTGGTCACATCCAGTTCCTATAATTAGATGATTCAAAACTCAAATTCTACATAATTGATAGCTGTTTCTGAAAGTACAGTTTCATTCTATTATAACGCGGTTCTCTTAGCAAAATGGAAAAGAAAAGGTCATTAACATTATTTAAACCACTCTTTTATTGACTATTTGCAGGCAGTTGGTATATGCTCCTTCTCTGGAACTACTGCAGCCGCTTCTAATGCTGCCATCAGGTTTCTTAGTGTTTTTTTCCCACAACATTTTCGTGGCATTCTCTGTGACTGAGTAATCTTTGAGCTTATCTATGTAATACTTTCATATGTACGCACCAAAAGGCCTAATAATGGATACTTTGCACATTCTTTTGTCGTGTATTGTACCCTATGCAGTCATTGGTTTATTGTTTAAAATAATTCAAACTATTGTAATATAGTCTTGTAATGGACTCTAATGTAGGTTTTGTTTATTGAATTAGCAGATGGGTCACCAAGGATGGCATTGGAGCGGTTGGACGCTTATTCATTGGTCTGGAATCATAA

mRNA sequence

ATGGAGAAGATAATTCTTGATCAATTTCTTTCCATACTGAGCGGAAAATGTCCGAGACGAAATGTCTTAATATCTCAAGAGGCGAAAGAAAATATCGATTTAGAGGAAGCGAGTACACGGCCAGCGGCAGTTGGTATATGCTCCTTCTCTGGAACTACTGCAGCCGCTTCTAATGCTGCCATCAGATGGGTCACCAAGGATGGCATTGGAGCGGTTGGACGCTTATTCATTGGTCTGGAATCATAA

Coding sequence (CDS)

ATGGAGAAGATAATTCTTGATCAATTTCTTTCCATACTGAGCGGAAAATGTCCGAGACGAAATGTCTTAATATCTCAAGAGGCGAAAGAAAATATCGATTTAGAGGAAGCGAGTACACGGCCAGCGGCAGTTGGTATATGCTCCTTCTCTGGAACTACTGCAGCCGCTTCTAATGCTGCCATCAGATGGGTCACCAAGGATGGCATTGGAGCGGTTGGACGCTTATTCATTGGTCTGGAATCATAA

Protein sequence

MEKIILDQFLSILSGKCPRRNVLISQEAKENIDLEEASTRPAAVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIGLES

Homology

[Close]

BLAST of CmaCh03G003500 vs. ExPASy Swiss-Prot
Match: B6IDH3 (Protein root UVB sensitive 5 OS=Arabidopsis thaliana OX=3702 GN=RUS5 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 43  AVGICSFSGT----TAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVG+ SFSGT    TAAAS AAIRWV+KDGIGA+GRL IG
Sbjct: 160 AVGVGSFSGTSAAATAAASAAAIRWVSKDGIGALGRLLIG 199

[Close]

BLAST of CmaCh03G003500 vs. ExPASy TrEMBL
Match: A0A1R3GVR4 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22964 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.1e-08
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 29 KENIDLEEASTRPAAVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
          K+   L   S+R  AVG+ SFSGTTAAAS AAIRWV+KDGIGA+GRLFIG
Sbjct: 27 KQGKFLRYISSRTKAVGVSSFSGTTAAASAAAIRWVSKDGIGALGRLFIG 76

[Close]

BLAST of CmaCh03G003500 vs. ExPASy TrEMBL
Match: A0A445DFS2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g019255 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 153 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 188

[Close]

BLAST of CmaCh03G003500 vs. ExPASy TrEMBL
Match: A0A445DFL0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g019255 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 153 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 188

[Close]

BLAST of CmaCh03G003500 vs. ExPASy TrEMBL
Match: A0A6P5NMG8 (protein root UVB sensitive 5 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC107484902 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 160 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 195

[Close]

BLAST of CmaCh03G003500 vs. ExPASy TrEMBL
Match: A0A6P4D8B9 (protein root UVB sensitive 5 isoform X1 OS=Arachis duranensis OX=130453 GN=LOC107484902 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 160 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 195

[Close]

BLAST of CmaCh03G003500 vs. NCBI nr
Match: OMO62194.1 (hypothetical protein CCACVL1_22964 [Corchorus capsularis])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 29 KENIDLEEASTRPAAVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
          K+   L   S+R  AVG+ SFSGTTAAAS AAIRWV+KDGIGA+GRLFIG
Sbjct: 27 KQGKFLRYISSRTKAVGVSSFSGTTAAASAAAIRWVSKDGIGALGRLFIG 76

[Close]

BLAST of CmaCh03G003500 vs. NCBI nr
Match: QHO38927.1 (Protein root UVB sensitive [Arachis hypogaea])

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 160 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 195

[Close]

BLAST of CmaCh03G003500 vs. NCBI nr
Match: XP_020996273.1 (protein root UVB sensitive 5 isoform X2 [Arachis duranensis])

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 160 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 195

[Close]

BLAST of CmaCh03G003500 vs. NCBI nr
Match: XP_025695530.1 (protein root UVB sensitive 5 isoform X2 [Arachis hypogaea])

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 160 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 195

[Close]

BLAST of CmaCh03G003500 vs. NCBI nr
Match: RYR61971.1 (hypothetical protein Ahy_A04g019255 isoform A [Arachis hypogaea])

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-07
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 43  AVGICSFSGTTAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVGI SFSGTTAAAS AAIRWVTKDGIGAVGRLFIG
Sbjct: 153 AVGIGSFSGTTAAASAAAIRWVTKDGIGAVGRLFIG 188

[Close]

BLAST of CmaCh03G003500 vs. TAIR 10
Match: AT5G01510.1 (Protein of unknown function, DUF647 )

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-08
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 43  AVGICSFSGT----TAAASNAAIRWVTKDGIGAVGRLFIG 79
           AVG+ SFSGT    TAAAS AAIRWV+KDGIGA+GRL IG
Sbjct: 160 AVGVGSFSGTSAAATAAASAAAIRWVSKDGIGALGRLLIG 199

The following BLAST results are available for this feature:

BLAST of CmaCh03G003500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6IDH3	1.3e-06	75.00	Protein root UVB sensitive 5 OS=Arabidopsis thaliana OX=3702 GN=RUS5 PE=2 SV=1	[more]

BLAST of CmaCh03G003500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3GVR4	9.1e-08	70.00	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22964 PE=3 ...	[more]
A0A445DFS2	2.0e-07	94.44	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g019255 PE=3 SV=1	[more]
A0A445DFL0	2.0e-07	94.44	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g019255 PE=3 SV=1	[more]
A0A6P5NMG8	2.0e-07	94.44	protein root UVB sensitive 5 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC10...	[more]
A0A6P4D8B9	2.0e-07	94.44	protein root UVB sensitive 5 isoform X1 OS=Arachis duranensis OX=130453 GN=LOC10...	[more]

BLAST of CmaCh03G003500 vs. NCBI nr


Match Name	E-value	Identity	Description
OMO62194.1	1.9e-07	70.00	hypothetical protein CCACVL1_22964 [Corchorus capsularis]	[more]
QHO38927.1	4.2e-07	94.44	Protein root UVB sensitive [Arachis hypogaea]	[more]
XP_020996273.1	4.2e-07	94.44	protein root UVB sensitive 5 isoform X2 [Arachis duranensis]	[more]
XP_025695530.1	4.2e-07	94.44	protein root UVB sensitive 5 isoform X2 [Arachis hypogaea]	[more]
RYR61971.1	4.2e-07	94.44	hypothetical protein Ahy_A04g019255 isoform A [Arachis hypogaea]	[more]

BLAST of CmaCh03G003500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01510.1	9.0e-08	75.00	Protein of unknown function, DUF647	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G003500.1	CmaCh03G003500.1	mRNA