CmaCh03G003250 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G003250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 4046256 .. 4049081 (+)
RNA-Seq ExpressionCmaCh03G003250
SyntenyCmaCh03G003250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACAGTGCCCTCTCTAGCCGCCATGGATGTGGCTAGAGTCAGGGTTACAAGGACGGCTAATGTCCGGCCCATTAAGAGGCCACCTGAGACATACAACAGTCAGAATCATAACTAAATGGGAAATTTAAGTAGAAAAAAAAAATCCTCAGAAGGGTTTTCGCAGAATTAGGAGGCATGAATTATTTGTAACTCTAGAAACTAAGAAATTTTGGAATTACACATTCCTCTCACACTTATTCGGGAACAAGGGAAGAGGAACGAGTAACTGAAACAAATTGATTAACAAAACTTCTTAATCAATCTGTCTGTCAGTGGAAGTAATACCAGATTTGAGATAGCGTGCAATTCTACCACCATCAATGCTTGAAAGAGTAAGAGATATTTCTCCGTTTAATCTCCACAGAAGAACGAATGCGATTAGATACCTGATAAAAAGGGCATCAGACCATCAGGAAAGAACAAGAACATCATTTCCTAATCTAATCTTAGGAACTCATCTCAAGCGCTTAAGCTAAATAAATAAGTTTACCACATTGTTGACGTACTCAGATATCACTGTCGCTATTGCAGCACCTCCAATGCCAAAACCACAAAAAAATATCAACAATGGATCCAGTACTGCATTGAGTAAATTGCCAGCAGCTGACACAACAAAACCAACTTTCATATTAATTAAAAGATCTTAATTAATTTTGAACAGTTTCCATATTCACATCACAGGAAGATAGTCGAGAACAATTATTGATATTACCAGTAGCATACAATGGCGTTTTTGTATCCTTAAATCCACGAAAGGTGCCTTGGGCAGCAAGAGCAATTACAATAGGGGGGGCACCAAATGCCCTCAGAGACAAAAATTGCTCCGCAGGTGCACGCATTGATGAACCCTACAAAATTTTAAGATAGATATGTTGTATGATAGAAATATGTCATGTAAAACCATAATCAAACAATGCAGAAGACGTAAACCAAAGACATTTCAAGACATGAATGAAACAACGAGGAGGGTTAGAAGCCAAGAATTATAAAATGAATTGGTAAAGCTTGACATACAACAGGTATACCCATGATATCCATAAGAGACCCTGAACCAAGAGACAGCATAACAGCTTCAGCAATTCCAATCCCAGCAGCAAGTGCCAAAGAAGTGGATACAGATGAAAGGAGCTTTTTCCCTTGATTCTCTTCTATGCCATCTGTATGGTAAAACCAAAAAAAGTTCACGACTTCATAGAAGACAATGTGGAGTTCTTAGTTTAAAAAATTACTGAAATTGCAAACTAGAATTACCAATATTTATTTGAACAGTGTTTTTCTCGTTTTTATGAATCAAGGCCTGCTCTTCAGCAACAAATGAAGTAGTGATATTGAGTAAAGGAACATTGAATAACTTCGACACCAAATTGAATACTGAAGCTGATACCCCAACTGCAGCCAGTTCAGTCGATCCTACAAAGAGAATGTATACGGCATGGTGCTGCAGTCATCAATATAACCTCCAATAAGATGAAATATTACTTCTAAAATTAATGTCAAGAACGAACCGTCCAAGCCCACCGTTTGCAAATATTGTCCGTTTTGACCTGTTATGTATCGCCGTTAGCCTCACAGTTTTAAAACGTGTCTACTAGGGATAGGTTTCCACCCCTATGAATGTTTCTTTCCCCTCTTTAACCGATGTGGAATCTCACAATCCACCCCCTTTGGAGGCCCAACGTTTTCACTGGCACACTGCTCGGTGTCTGGCTTTCCCTAGCAGACATCGAGCGGTGTGCTAAAGAAGACGTTGGGCCCTCAAGCGGGTGGATTGTGAGATCCCACATCGATTGGAGAGACGAACAAAACATTTCTGATAAGGGTGTAAAAACCTCTCCCTAACCAACACATTTTAAACCCTGGAATTGACGGTGATATGTAACAGCAAAGCGGACAATATTTACTAGCAGTAGACTTGGACTAACACCTGCCATCACAATCAGTACTCATCTAAAGTTCAATTACGAACTCTTGCCTCCAATACTCCAGAATCCAGATAAGTAAGTAATAAAGAAACGATTCCTTTTGCACAATTCAGATAAATATTACCGTAACTTAATGCATGAAGAAGTTTTGTACCTATATGACCAACAAAAGCCGTGTCAATCAATGATGCAATTGGATCAGCAGCCAAAGCCAGTGCAGCAGGCAATGCAATCGCCAATATGTCCAGCGCAAGTTTATCAAACTTAAAAACCGCATCTCTAGGGAAATTCAAGAAATCAAATTCCTAGGTAAGATTCTAGAATTGAAGATATATACCGTTGCTGTATTCAAAGATCTTTTTCTTTGCCTTTCATTTTTGGATGTGATCTAATTAAAGAAAATAACGCTAAAAAAGCTGATCTAAATTTCAAAGACGAACCAACTCGGCCTGCCGCTCTGTCCTTCAAGGATCAAAACTTACCTAAAACGATTTAGAAGTGGAACTGAGACGAACGTAGACAACAAAGAGTTGGACGACTTCTTGCCCGGTCCGTTTCGACGGAGCTGCTCGGACGAGGCTGTTGACTTCGGTTCTTCCGGCGGACTCTTCAAGGAAGAAGTAGTAAGATTCTTCTGGAACGACGCTTTCCGAAAATAACGAAAACGGACTTGACAATTGGCGTTTCTGCGCAGCAGTTGACACTTGGAAGATAAATTAGTGCCGGTATTGAAGCATGGAACATAGATAGAGAGACCGGTCGCCATCTCCGGTCACGGAGAAATGGAACAGTGGAAAGGCCGGCCGGTGGAGATTGAGAAACGGGAAGATGAAACCATATACATTTGTCCCAATTTGTAA

mRNA sequence

ATGGGTACAGTGCCCTCTCTAGCCGCCATGGATGTGGCTAGAGTCAGGGTTACAAGGACGGCTAATGTCCGGCCCATTAAGAGGCCACCTGAGACATACAACAATATCACTGTCGCTATTGCAGCACCTCCAATGCCAAAACCACAAAAAAATATCAACAATGGATCCAGTACTGCATTGATTTCCATATTCACATCACAGGAAGATAGTCGAGAACAATTATTGATATTACCAGTAGCATACAATGGCGTTTTTGTATCCTTAAATCCACGAAAGGTGCCTTGGGCAGCAAGAGCAATTACAATAGGGGGGGCACCAAATGCCCTCAGAGACAAAAATTGCTCCGCAGGTATACCCATGATATCCATAAGAGACCCTGAACCAAGAGACAGCATAACAGCTTCAGCAATTCCAATCCCAGCAGCAAGTGCCAAAGAAGCCTGCTCTTCAGCAACAAATGAAGTAGTGATATTGAGTAAAGGAACATTGAATAACTTCGACACCAAATTGAATACTGAAGCTGATACCCCAACTGCAGCCAGTTCAGTCGATCCTACAAAGAGAATGTATACGGCATGGTGCTGCAATAAATATTACCGTAACTTAATGCATGAAGAAGTTTTGTACCTATATGACCAACAAAAGCCGTGTCAATCAATGATGCAATTGGATCAGCAGCCAAAGCCAGTGCAGCAGGCAATGCAATCGCCAATATGTCCAGCGCAAACGAACCAACTCGGCCTGCCGCTCTGTCCTTCAAGGATCAAAACTTACCTAAAACGATTTAGAAGTGGAACTGAGACGAACGTAGACAACAAAGAGTTGGACGACTTCTTGCCCGGTCCGTTTCGACGGAGCTGCTCGGACGAGGCTGTTGACTTCGGTTCTTCCGGCGGACTCTTCAAGGAAGAAGTAATAGAGAGACCGGTCGCCATCTCCGGTCACGGAGAAATGGAACAGTGGAAAGGCCGGCCGGTGGAGATTGAGAAACGGGAAGATGAAACCATATACATTTGTCCCAATTTGTAA

Coding sequence (CDS)

ATGGGTACAGTGCCCTCTCTAGCCGCCATGGATGTGGCTAGAGTCAGGGTTACAAGGACGGCTAATGTCCGGCCCATTAAGAGGCCACCTGAGACATACAACAATATCACTGTCGCTATTGCAGCACCTCCAATGCCAAAACCACAAAAAAATATCAACAATGGATCCAGTACTGCATTGATTTCCATATTCACATCACAGGAAGATAGTCGAGAACAATTATTGATATTACCAGTAGCATACAATGGCGTTTTTGTATCCTTAAATCCACGAAAGGTGCCTTGGGCAGCAAGAGCAATTACAATAGGGGGGGCACCAAATGCCCTCAGAGACAAAAATTGCTCCGCAGGTATACCCATGATATCCATAAGAGACCCTGAACCAAGAGACAGCATAACAGCTTCAGCAATTCCAATCCCAGCAGCAAGTGCCAAAGAAGCCTGCTCTTCAGCAACAAATGAAGTAGTGATATTGAGTAAAGGAACATTGAATAACTTCGACACCAAATTGAATACTGAAGCTGATACCCCAACTGCAGCCAGTTCAGTCGATCCTACAAAGAGAATGTATACGGCATGGTGCTGCAATAAATATTACCGTAACTTAATGCATGAAGAAGTTTTGTACCTATATGACCAACAAAAGCCGTGTCAATCAATGATGCAATTGGATCAGCAGCCAAAGCCAGTGCAGCAGGCAATGCAATCGCCAATATGTCCAGCGCAAACGAACCAACTCGGCCTGCCGCTCTGTCCTTCAAGGATCAAAACTTACCTAAAACGATTTAGAAGTGGAACTGAGACGAACGTAGACAACAAAGAGTTGGACGACTTCTTGCCCGGTCCGTTTCGACGGAGCTGCTCGGACGAGGCTGTTGACTTCGGTTCTTCCGGCGGACTCTTCAAGGAAGAAGTAATAGAGAGACCGGTCGCCATCTCCGGTCACGGAGAAATGGAACAGTGGAAAGGCCGGCCGGTGGAGATTGAGAAACGGGAAGATGAAACCATATACATTTGTCCCAATTTGTAA

Protein sequence

MGTVPSLAAMDVARVRVTRTANVRPIKRPPETYNNITVAIAAPPMPKPQKNINNGSSTALISIFTSQEDSREQLLILPVAYNGVFVSLNPRKVPWAARAITIGGAPNALRDKNCSAGIPMISIRDPEPRDSITASAIPIPAASAKEACSSATNEVVILSKGTLNNFDTKLNTEADTPTAASSVDPTKRMYTAWCCNKYYRNLMHEEVLYLYDQQKPCQSMMQLDQQPKPVQQAMQSPICPAQTNQLGLPLCPSRIKTYLKRFRSGTETNVDNKELDDFLPGPFRRSCSDEAVDFGSSGGLFKEEVIERPVAISGHGEMEQWKGRPVEIEKREDETIYICPNL
Homology
[Close]
BLAST of CmaCh03G003250 vs. ExPASy TrEMBL
Match: A0A0A9DD01 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.6e-15
Identity = 59/123 (47.97%), Postives = 71/123 (57.72%), Query Frame = 0 

Query: 32  TYNNITVAIAAPPMPKPQKNINNGSSTALISIFTSQEDSREQLLILPVAYNGVFVSLNPR 91
           TY+++TVA AAP  P+P    N  SS      FT         L +P AY GVFVS++PR
Sbjct: 27  TYSDVTVAKAAPLTPRPSGKTNIASSIT----FTR--------LPIPTAYKGVFVSMSPR 86

Query: 92  KVPWAARAITIGGAPNALRDKNCSAGI--------PMISIRDPEPRDSITASAIPIPAAS 147
             P AA A TIGGAP AL  +NCSAGI        P+ SI  P+P+ S T S  PIPAA 
Sbjct: 87  NAPCAASATTIGGAPYALNVRNCSAGIRIGESIGTPITSISVPDPKISATVSISPIPAAK 137

The following BLAST results are available for this feature:
BLAST of CmaCh03G003250 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G003250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9DD018.6e-1547.97Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CmaCh03G003250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh03G003250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G003250.1CmaCh03G003250.1mRNA