CmaCh03G001880 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G001880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionbeta-galactosidase 7
LocationCma_Chr03: 2826503 .. 2826782 (-)
RNA-Seq ExpressionCmaCh03G001880
SyntenyCmaCh03G001880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTACTGCAACAACTTTAGTCCTAACAATCCTAACCGCCCAAAAATATTTACTGAAAATTGGGTGGGATGATTCAAGAAATGGAGTGACAAAAGAGCCTTACAAAACTGCACAAGATGTAGCCTTTTCTGTGGCAAGATTTTTTCAATCAGGTGGCGTGTTTAACAATTATTATATTTACCATGGAGGTACCAACTTTGGAAGAACATAGGGAGGTCCATTCATCACTACGTCTTATGATTACAACGCTCCACTTAATGAATATGAGAACTTGA

mRNA sequence

ATGGATTCTACTGCAACAACTTTAGTCCTAACAATCCTAACCGCCCAAAAATATTTACTGAAAATTGGGTGGGATGATTCAAGAAATGGAGTGACAAAAGAGCCTTACAAAACTGCACAAGATGTAGCCTTTTCTGTGGCAAGATTTTTTCAATCAGGTGGCGTACCAACTTTGGAAGAACATAGGGAGGTCCATTCATCACTACGTCTTATGATTACAACGCTCCACTTAATGAATATGAGAACTTGA

Coding sequence (CDS)

ATGGATTCTACTGCAACAACTTTAGTCCTAACAATCCTAACCGCCCAAAAATATTTACTGAAAATTGGGTGGGATGATTCAAGAAATGGAGTGACAAAAGAGCCTTACAAAACTGCACAAGATGTAGCCTTTTCTGTGGCAAGATTTTTTCAATCAGGTGGCGTACCAACTTTGGAAGAACATAGGGAGGTCCATTCATCACTACGTCTTATGATTACAACGCTCCACTTAATGAATATGAGAACTTGA

Protein sequence

MDSTATTLVLTILTAQKYLLKIGWDDSRNGVTKEPYKTAQDVAFSVARFFQSGGVPTLEEHREVHSSLRLMITTLHLMNMRT
Homology
[Close]
BLAST of CmaCh03G001880 vs. ExPASy Swiss-Prot
Match: Q9SCV5 (Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 6.0e-04
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 23  GWDDSRNGVTKEPYKTAQDVAFSVARFFQSGG 55
           GW  +  G  K PY+TA+D+AFSVARFFQ+GG
Sbjct: 257 GWFKNWGG--KHPYRTAEDLAFSVARFFQTGG 286

[Close]
BLAST of CmaCh03G001880 vs. ExPASy Swiss-Prot
Match: P49676 (Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.0e-04
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 23  GWDDSRNGVTKEPYKTAQDVAFSVARFFQSGG 55
           GW  +  G  K PY+TA+D+AFSVARFFQ+GG
Sbjct: 256 GWFKNWGG--KHPYRTAEDLAFSVARFFQTGG 285

[Close]
BLAST of CmaCh03G001880 vs. TAIR 10
Match: AT5G20710.1 (beta-galactosidase 7 )

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 23  GWDDSRNGVTKEPYKTAQDVAFSVARFFQSGG 55
           GW  +  G  K PY+TA+D+AFSVARFFQ+GG
Sbjct: 257 GWFKNWGG--KHPYRTAEDLAFSVARFFQTGG 286

The following BLAST results are available for this feature:
BLAST of CmaCh03G001880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SCV56.0e-0462.50Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2[more]
P496766.0e-0462.50Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1[more]
BLAST of CmaCh03G001880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G001880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G001880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G20710.14.2e-0562.50beta-galactosidase 7 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G001880.1CmaCh03G001880.1mRNA