CmaCh03G001550 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G001550
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 1984631 .. 1985500 (+)
RNA-Seq ExpressionCmaCh03G001550
SyntenyCmaCh03G001550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGAAACAAATTCTTCGTAATGTTCAAACTCTCTCTCTCTCTCTGATTCTCTATTTGATGTGAAATTATTGTTGATCGTTCGTTAATGGCGGCTCTGAAAATCGCATGTTAGGGTTAAAATGAAGGCAATTCAAATCAAATCAAAAGCAAGAACAAATTGAATAGAGTGAAGGAATTCTGTGAATCGTTGATGGAGAACGGATTCAATTTGTTTGATTGAATTATTAAATCGATGATTGCTTAGGAGTTGTAGTTGTGAGAGCCACACGTGCATTGTTTGTTTGCCTTTATTCTGCGATTATTTATTTTCAAATGCTTTTTTTCTCTGAACTCATCCTTTATGCATTTCTTCTTTACAACCAATCAATGCAAACTATGC

mRNA sequence

ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGAAACAAATTCTTCGGTTAAAATGAAGGCAATTCAAATCAAATCAAAAGCAAGAACAAATTGAATAGAGTGAAGGAATTCTGTGAATCGTTGATGGAGAACGGATTCAATTTGTTTGATTGAATTATTAAATCGATGATTGCTTAGGAGTTGTAGTTGTGAGAGCCACACGTGCATTGTTTGTTTGCCTTTATTCTGCGATTATTTATTTTCAAATGCTTTTTTTCTCTGAACTCATCCTTTATGCATTTCTTCTTTACAACCAATCAATGCAAACTATGC

Coding sequence (CDS)

ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGA

Protein sequence

MPEPQTHENFAQNPPLSPLSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAIEGGGLESIAD
Homology
BLAST of CmaCh03G001550 vs. ExPASy TrEMBL
Match: A0A0A0L245 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.7e-40
Identity = 107/156 (68.59%), Postives = 119/156 (76.28%), Query Frame = 0

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAI 155
           KK +R V     ++    E+ +EEE+ +ADALLEAI
Sbjct: 121 KKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAI 148

BLAST of CmaCh03G001550 vs. ExPASy TrEMBL
Match: A0A5D3CCB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00340 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36
Identity = 93/127 (73.23%), Postives = 100/127 (78.74%), Query Frame = 0

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF--PAADPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF  PA DPDP D PL+P AVA        +D DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPL------QDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 119

Query: 121 KKEQRSV 126
           KKE+R V
Sbjct: 121 KKEEREV 119

BLAST of CmaCh03G001550 vs. ExPASy TrEMBL
Match: A0A0V0HAK9 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-11
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = 0

Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ + GD P  PT           ED D++R+PKRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSGDDPSPPTTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEEEDEDDD 128

Query: 137 DEEQMKEEEVEVADA--LLEAIEG 157
           D+++ K + V   ++  LL +++G
Sbjct: 129 DDDEEKPDVVVEKNSMGLLSSVDG 149

BLAST of CmaCh03G001550 vs. ExPASy TrEMBL
Match: A0A1S4BGV3 (uncharacterized protein LOC107808130 OS=Nicotiana tabacum OX=4097 GN=LOC107808130 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-11
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 0

Query: 17  SPLSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELT 76
           SP +  S PA  PD  D P    A          ED D +R+PKRRK+CP+AL+  D + 
Sbjct: 9   SPAANCSTPA--PDTVDDPPPQAAAESCEEKPDKEDPDSLRQPKRRKNCPTALDKFDSVN 68

Query: 77  SASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGD 136
           SA+N  F+F+FD+KF   S  E+TPKFGSFN +  +   +K  K E+R + +       D
Sbjct: 69  SATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPKTVSSKDPKSEERELKED------D 128

Query: 137 EEQMKEEEVEVAD------ALLEAIEG 157
           E++  EE  +V +       LL +++G
Sbjct: 129 EDEDDEERDDVIEKKNNSLGLLSSVDG 147

BLAST of CmaCh03G001550 vs. ExPASy TrEMBL
Match: W9S7C4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027885 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-10
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 0

Query: 19  LSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSA 78
           LS  S  + +PD GD    PTA    A     ED D  REPK+R+ CP ALE ++EL   
Sbjct: 15  LSLPSSASENPDSGDVSQTPTA----ADYPVSEDPDSTREPKKRRCCPKALEQVEELLIG 74

Query: 79  SNSS---FAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGD 138
            NS+   F+F+FDTKF   S EITPKFGSFN + S      +  K++    D      G 
Sbjct: 75  PNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKDQTQNPTGS 134

Query: 139 EEQMKEE 143
             +  EE
Sbjct: 135 SSETVEE 137

BLAST of CmaCh03G001550 vs. NCBI nr
Match: KAG6604296.1 (hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034454.1 hypothetical protein SDJN02_04183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 142/183 (77.60%), Postives = 148/183 (80.87%), Query Frame = 0

Query: 1   MPEPQTHENFAQNPPLSPLSRSSFPAADPDPGDRPLAPTAVAVSAAADFG----EDTDLI 60
           M EPQT ENFAQNP LSPLSRSSF AADPDPG+R L PT +AVSAAADF     ED DLI
Sbjct: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLI 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTK 120
           REPKRRKHCPSALENLDELTSASNSSF FTFDTKFC VSAEITPKFGSFNSI SE+E TK
Sbjct: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMESTK 120

Query: 121 KEKKEQRSVLDSASKTRGD---------------EEQMKEEEVEVADALLEAIEGGGLES 165
           KEKKEQR VLDSASKTRGD               EE+ +EEE EVADALLEAIEGGGLES
Sbjct: 121 KEKKEQRLVLDSASKTRGDEEREESVNRGTEEEEEEEEEEEEKEVADALLEAIEGGGLES 180

BLAST of CmaCh03G001550 vs. NCBI nr
Match: KAG6595438.1 (hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027436.1 hypothetical protein SDJN02_11449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 9.6e-51
Identity = 128/181 (70.72%), Postives = 138/181 (76.24%), Query Frame = 0

Query: 1   MPEPQTHENFAQNPPLSPLSRSSFPAADPDPGDRPLAPTAVA--VSAAADFG----EDTD 60
           M EPQT E FAQNP LS LSRSSF AAD DP D PLAP AVA  V+AA+D      ED D
Sbjct: 1   MAEPQTRETFAQNPSLSILSRSSFVAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEP 120
           L+REPKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E E 
Sbjct: 61  LLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHETET 120

Query: 121 TKKEKKEQRSVLDSASKTRGDEEQMK---------EEEVEVADALLEAIEGG--GLESIA 165
            KK+KKEQRSVLD AS  RGDEE+ K         E+E++V DALLEAI  G  GLES+A
Sbjct: 121 KKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGEGREGLESVA 180

BLAST of CmaCh03G001550 vs. NCBI nr
Match: KGN54677.1 (hypothetical protein Csa_012626 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 7.6e-40
Identity = 107/156 (68.59%), Postives = 119/156 (76.28%), Query Frame = 0

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAI 155
           KK +R V     ++    E+ +EEE+ +ADALLEAI
Sbjct: 121 KKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAI 148

BLAST of CmaCh03G001550 vs. NCBI nr
Match: KAA0025819.1 (uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09637.1 uncharacterized protein E5676_scaffold447G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-36
Identity = 93/127 (73.23%), Postives = 100/127 (78.74%), Query Frame = 0

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF--PAADPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF  PA DPDP D PL+P AVA        +D DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPL------QDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 119

Query: 121 KKEQRSV 126
           KKE+R V
Sbjct: 121 KKEEREV 119

BLAST of CmaCh03G001550 vs. NCBI nr
Match: KAG5583307.1 (hypothetical protein H5410_053934 [Solanum commersonii])

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-12
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 0

Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S P  ++ + GD P  PT   +       ED D++R+PKRRK+CPSAL+  D L
Sbjct: 9   APAENCSDPVPSNSNSGDDPSPPTTAEIWEEKPEIEDPDILRQPKRRKNCPSALDKFDSL 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEEEDEDDD 128

Query: 137 DEEQMKEE-EVEVADALLEAIEG 157
           D+++ K +  VE +  LL +++G
Sbjct: 129 DDDEEKPDVVVENSMGLLSSVDG 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2453.7e-4068.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1[more]
A0A5D3CCB22.5e-3673.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0V0HAK92.1e-1136.81Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
A0A1S4BGV32.1e-1137.41uncharacterized protein LOC107808130 OS=Nicotiana tabacum OX=4097 GN=LOC10780813... [more]
W9S7C41.0e-1040.94Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027885 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6604296.11.9e-6277.60hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595438.19.6e-5170.72hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54677.17.6e-4068.59hypothetical protein Csa_012626 [Cucumis sativus][more]
KAA0025819.15.1e-3673.23uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09... [more]
KAG5583307.15.2e-1237.76hypothetical protein H5410_053934 [Solanum commersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G001550.1CmaCh03G001550.1mRNA