CmaCh02G018100 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G018100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein PALE CRESS, chloroplastic
Location	Cma_Chr02: 10055770 .. 10061867 (-)
RNA-Seq Expression	CmaCh02G018100
Synteny	CmaCh02G018100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAGTCATATTTATATCTGTGTGATTTCGTGTCCTAAATTAGGAGAAATTTGTGTAATCTCATTTATCTTGTTATTTTTAAAAAATAAATTAAATTGAGGAGCCCCTTGTCCTTTAATCCGTTCGTGCAAGCATCCAAGTCCTTTCCCAGCCTGCTGGTTGTTTCGGAACTATAATGTTGGCACAGGTGCTTTGGCTGAGATGCTCACCAGTTCCACCATTACCCTCTGCTTCCCCAACCTTACCGAAGCTTTCAACCTCCTATTTCTTAAAGCTTTATTCATCTCGTCCTGGTTAGCTCTGTTGCAGCTTGTTTATTCACTCTTCAGATACTGAATTTATCGTAACTTCTCATTTTGGAGGTTTTGGTGATTTTGATGGTCAGTTTTAAGGAGGAGCTTGAGCAAGGAAGAGCCGCTTATTGATGGGCTTCCCAAAGAGTATTACGATGATGTACGTGGATATTTGAATTTAACTACTCCCTAATTTGCATTTTCGGTTGATTGAGCTTCTACTTCTTCATCTATTTCTTCTTGTTTGCTATTTATTTGATTTTTTCTCTCTCTCTGGTGGTTTGGAAAAGGGTTAACACTTGACAGATATGAAAATGATTGATTTTCCGAGTGACACATGCCTGTTATCTAGAACCTGCTGAAGCTGAAACACTTTCGAACATAAATAAAAGACAATTTCTGTACTTGACGATTTTAGGGGAAGTTTCCTGTTCGACAAAATGTTTTGTGAAAATTTATTTATTTTTACATACCAAATCCTCACTCTAATTATTTCGTCATCTTCCTTTCTGGCTGACCAAAAACTTGTGACCATGGTTAAACGTCGTAAAAGAACTTGTGTTTCCTATTTTACTAATTATACTGATGTGGCCCAAAATTCGTGATCATGAGAGCGAGGGAGGGGGGAAAAGAAAAGAGGAAGAACAATGATGCAGGGGAAATGAGAGGGAAAGACAGCACGAATGAAAGTATAGGAAAATAAGTTGGAAGGTTATTTTACAAAGCTGACAGATGCAATTTTTGTTCGATCTCTTTAATTTTGAGGGTGGATAGATTTCTTCGAGGTAGTATAAGCATAGTGGCAGCCACCAGAGAGAATCAATGCGTTTTTCTTTTAACTGACCATCAGAAAGAAAATATATTGGTCAAAGAAATAGAGTGAGCATTTTGGTTCAAAGAAACTAATTATATATATTTATATTTCCTGAGCTATTGATGAATGGGTCAGGAAAAAAGAAACAGGGGTGGCTACTAAATTGGATATGAAAAGGCCTTTTGGTATGATGGATTGGGATTTCCTCGAAGAGAATCATTGTCAAAAAAGGGTTTGAGAACAAGGGGATACGATAGATGCGGGTGTATATCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACAACATTTTCCATTATAAATGGCAAGCCAAGAGGCAGATTTGATGCATTTAGAGGCCCATGCCAAAGAGACCCCCCTCGATTATTGATCAATGCAACATTGGACCCGACAAAGTAAACTGTACCAAAATCTTACTCCCTTCCTCTTTAGTTAACTTTGCATCAGAAGAAATGCTTCCCAACTGTGTTATACAATTAGACAATGAATCATTTTTGAGTTTAAGTAGCTTGAAAATTGACTGTCAGCCAGTCTACAAGTATAATGATGATGCCATTGCTGAAGACTCATTGTTTTGAAGGTCTAGTCTCTCTTTTTCAGACACCTGGTAATCTGAATGTTTCTGAAATTATTGTGCCAAGAGGAAAACAGGCTTTAGACAATGATTTTCTATATGCATCACATTCAGGTTTGCACAATTTTTCTTCTATGATTAAGGCCAGTAATGTACAATTCCGTGAAATTAATCCCTCTTTTCCAAAGGCTACCAGAAAATTAATTCAAGTTGAACTCCCTCTTTGATATACTATAAAGATTTTTTCTTGGAACACCAGGGTCTGGGAAATGGATCCAACGAAGGAGTCTGAAGAATTTTTGTGAAGCATTTGCCCCGATAGTGTTGACTCAAGATTTCAATTTGTCATCAGTAGCTCAAAAGATTGTAGAATCTTTATGCAAAATCTTTATGGGGTTCAAAAGGTATTAATTGGGTTCAGGTGGAATCCTTGGGATGTTTGGGAGGTTTGCTAGTTTTGTGGATTGAAAGCAAGGTGAGTTTGGAATTGGATCGATTTTTCCTTCTTTTTTCTTTTTCTTTTTTTTTTTGGAAAAGCAAAGAGGGTGGAAAGGTATCACATTTCGAAAGTCTTTTCATTTTTTAATATTATTTTTGTTTCTTGTTAAAAAAAATATATATATATATAGTACATAGTGTTATAACATATATGATATTATGCATAGTTGTCTTTTATTGTAATATATAGGTTCAACGAGCTCAACAAGAGAAGATGAGTATCACGAGCTTTCTTAATGGACATTCGTATGAATTCGGGATCACTAAATCACAAATTCTCTGCCTCTGAGACCCCTTATTTGGACGAAACCTTTATTAGAGTCCTTCGTGCGTAAAATCCTTCATCTGGTTCATCTAGTTCTCAAGTTTAACAATACTCTATTTAGTCGGAATGATTCTAAGGTTGCCAAGGGGATGAGCATCAATACTCAGAGACTTGGTTCCGACAATCAGCGACAAGATTTTTGTAGGAGATTGTATGTAACTGTCGTAAGTTTGGTCATATGAAACATAACTATCGGAAGTTCTTGAATAAGGGTCAAAGACCTCAAGTTGCTCAGGTTGCCTCCATCAATGATACATCTGAGAGATCGGTTACTATTTCTTTTGATGGTTTTGCCAAATTCCAATTGCATCAGAAATAATCGCATGCATCATTGAACCCTATTGCAACCCTTCCAATGTCTTCTTACATCCTCTATTAAATGGGTCATAGACTCCGGTGCCACGACCCATATGACATACAATTCTAGCTTATTTCCTACTTGTTTGTCACATGCACCTTCTCTGGCTGTCACTTTCGCATATAAATCAACATCCTTTATTCTTGGATATGACATCATTAATTCCACACCCTCTATTCCTTTAGCTTCTGTTTTACATTTGCTTCGACTCTTTTTAACTTGATTTCTTTTTGTGAACTCACTTGTGACCTTAATTGTTTTGTCTATTTTTTCTCTGGCTATCACTTGTTTCGGGATCATATGACGAAGAAGATTATTGGTACAGGATATGAATTTGGAGGTCCATTCATTTTTTTATCACTAGAAACCAAATGTTCTCGCCTCCTCTGGCACTGCATCCTCGTTTGATGTTCATTAACGTTCTTTTTGTTACATTTTTTCAGTGTGGGCTTTATAAAGCTTTTTGTAGTTACTTTATTGATGATGTTTTGGCTAAATAGAAGGCTTTCTTGTAACCTTATTTAACTTCGGAGTTGGCCTCCTCTTCTTTTGTATTTTTCGTTAATCGTGTTTTTTTATTAAAAAAAAGGAAAAATGTTTAAAAAAATCAGATATTAACCTGTTCTACAATAGGAATGGCAAGCCCGACAAAGAGAGAAGACAAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGAAAGAAAGGTAGAAGAATATCGTGAGATTGGGATGCGTCTGAAAGGATTTCCCGAAGAAGATGTCAGAAAAGCTAGAAAACTGGTTTCAAGCTTTATTAGAGCTGTTGAAGAAGTTGAAGAGGTAATCAACTATTAACATAATGTATTGATATAAAAATTAAATTTATCATAACTCATTAGCTTAAACTTTTGGATTAATTGGTAATTTATAACATGCTATCAGAGTAGAAGGTCCTAGGTAATATAATTTCCTCTTGAGTTCGTATTGATTTCCACTTGTTAGGTCTTCTTTAAATTTTCAAGTCCACAGGTGAAAAGGAATAGTATTGATATTAGATTAAATTTACCACTTAAGTTCTTAAGTTTTGGGTTGATTGATGTAACATTATGCTACTATTAATCATTAACTTGATCTTTCAAAAAGTAGGGTGTTGTCTTCGAATCCGCATGAAGTTTTCTTGTTCTTGCTTTTGGCGAAGGTTTTTTGACAATGCTCTAAAAGATAGCTTAAGCAAACACAAACCACGAGTTCTCAACTAAACAATTATAGTTTGCTTACTAGAGCCTGCACAGTGACTTGGCTATGGTTTGCGAATGAAGGATATTTAGGGTTTTTTATTAGTATATTCTTCTTAGGTATGATTATAGTGTTCTATTCATGGGTAGTAATCATGGTGATTTTTCTTTGAATTTGTCTAATTTCGTACCATTTTTCACATAAAGCTTCTGACTATTAAATTATTGCAGAACTGGCTTATTGACTTTCTGATACTATATTTTATCAATTGGAATGCAGAAAATTGAGGAAGCTGCTGAGAAAGGGGAACTAACAGAGCTTGTTCTATTAGTCATATGGAATCGACTTGATTTAGCACGTCGTGATGTATATTAGTCTTCAAATTCCTTTAATTTTCATTCACTTTGTATATTTTGTAGGGAGCCTAGTCGTATGTGCTTACTTGTAATTGGCTCTTTCTTCAGGATGAAAAGGATGCAATTAGAAGTCTTGATCTGCTATATCGAAGGGTTGAGGTATGAACATGTTCAAAACTTCTTTAAATATGCCATATTGATTACGAGCTTAGAGAACACTCATTCAAATCCACACACGTACATGCAAGTTTTGCAATTGTAGGTCAAGGAAAAGGTTCTTAACTTGTCCCCAAGGATCATTCTTAAATTTATCTACTATAGCAGTTGTAACAGGGTCTTGTGCTCGTGATTTACTGAAACATTTTTTTTAATCTTTTAGGTGTTTTTATCACTCCGTCCATTTTTTTACACAATCCATTTTGGATCCTGTCTTACCAGTGAAATGGTTTTTAGTTACAGGTTGTAACTTGCGGCACTTTTCTATTCAAGTCATCTCACTAATCTTTATACCAGCATTACTTTTTTCTTTTCCTTCAATTTTATTCTGGAAAAAGCAAGAATGTGTATTCTCCTAGTAATTCATGTTCTAAGTTTCCTCAATATTTTAGACTGAAATTCTCAAACGAGAGGCTAGTCCTGCCATGAGACTGCTCAACGATCTTCTGAATATGTATGACAACTTCAACGATGAAGGATGGCTAAAAGACTGCAGAAAACGCATGATTGATACCTTCCCGCGGGAGGATCCATTTAGCATTCTCGTTCCAGCTGGATTCGACATCGATAAGGTATACTTGTGTAAATATGATAGCTCAATTGGTTTCCAACGAGATGTAGATGATAAAGTTTAAGGAATGTCTAAACTGAGTCTGCTTTTATTCTATTTTGTCTTAATGATTAGCATCAAGGGCAGTTACGGCCATCACTTGAAGTTGAAGCTGATAATACACTGTTGAGAGTAGACTTCGTCAGAGAGGTTGATGAATTGCTACAAGAAGTCAGGGCGGATCAGAGTGAAGTGCAAAATGCAAATGCAGATGGTTTTGACGCGGAATCGGTGGCAAGTAGGTTGAAACATCAGGAGAAACAACGGTCGGTAAGGTTGGTAGAAACGCTGCTAGAGTTGGCTATGAATTTAGAGTGGTAGGGTAGGCATAAGAATGAAATGGGCGTAGGATTTTAGTGGAAAAGAGAAGAATTTTAGGTTGCCCCAATATTCAATTATCCACGTCCACGTTTGGTTTTTAAGAATGTTTCTAATAAACCTAGTCGAACTTTAACCATATCGTTGTCTTGAAATGAATTGATGTTGAAATAGGAACACAAAATTTAAATTTAGTATTGAAACAACCTGGTTCTGGTGTAGATATTAATACAAGTAGCCCTGATTTGTGATGA

mRNA sequence

TTAAGTCATATTTATATCTGTGTGATTTCGTGTCCTAAATTAGGAGAAATTTGTGTAATCTCATTTATCTTGTTATTTTTAAAAAATAAATTAAATTGAGGAGCCCCTTGTCCTTTAATCCGTTCGTGCAAGCATCCAAGTCCTTTCCCAGCCTGCTGGTTGTTTCGGAACTATAATGTTGGCACAGGTGCTTTGGCTGAGATGCTCACCAGTTCCACCATTACCCTCTGCTTCCCCAACCTTACCGAAGCTTTCAACCTCCTATTTCTTAAAGCTTTATTCATCTCGTCCTGTTTTAAGGAGGAGCTTGAGCAAGGAAGAGCCGCTTATTGATGGGCTTCCCAAAGAGTATTACGATGATGAATGGCAAGCCCGACAAAGAGAGAAGACAAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGAAAGAAAGGTAGAAGAATATCGTGAGATTGGGATGCGTCTGAAAGGATTTCCCGAAGAAGATGTCAGAAAAGCTAGAAAACTGGTTTCAAGCTTTATTAGAGCTGTTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCTGAGAAAGGGGAACTAACAGAGCTTGTTCTATTAGTCATATGGAATCGACTTGATTTAGCACGTCGTGATGATGAAAAGGATGCAATTAGAAGTCTTGATCTGCTATATCGAAGGGTTGAGACTGAAATTCTCAAACGAGAGGCTAGTCCTGCCATGAGACTGCTCAACGATCTTCTGAATATGTATGACAACTTCAACGATGAAGGATGGCTAAAAGACTGCAGAAAACGCATGATTGATACCTTCCCGCGGGAGGATCCATTTAGCATTCTCGTTCCAGCTGGATTCGACATCGATAAGCATCAAGGGCAGTTACGGCCATCACTTGAAGTTGAAGCTGATAATACACTGTTGAGAGTAGACTTCGTCAGAGAGGTTGATGAATTGCTACAAGAAGTCAGGGCGGATCAGAGTGAAGTGCAAAATGCAAATGCAGATGGTTTTGACGCGGAATCGGTGGCAAGTAGGTTGAAACATCAGGAGAAACAACGGTCGGTAAGGTTGGTAGAAACGCTGCTAGAGTTGGCTATGAATTTAGAGTGGTAGGGTAGGCATAAGAATGAAATGGGCGTAGGATTTTAGTGGAAAAGAGAAGAATTTTAGGTTGCCCCAATATTCAATTATCCACGTCCACGTTTGGTTTTTAAGAATGTTTCTAATAAACCTAGTCGAACTTTAACCATATCGTTGTCTTGAAATGAATTGATGTTGAAATAGGAACACAAAATTTAAATTTAGTATTGAAACAACCTGGTTCTGGTGTAGATATTAATACAAGTAGCCCTGATTTGTGATGA

Coding sequence (CDS)

ATGTTGGCACAGGTGCTTTGGCTGAGATGCTCACCAGTTCCACCATTACCCTCTGCTTCCCCAACCTTACCGAAGCTTTCAACCTCCTATTTCTTAAAGCTTTATTCATCTCGTCCTGTTTTAAGGAGGAGCTTGAGCAAGGAAGAGCCGCTTATTGATGGGCTTCCCAAAGAGTATTACGATGATGAATGGCAAGCCCGACAAAGAGAGAAGACAAAGGAGTTACATCGAAGGCGTCAAGAGGAAGATGAAGAAGAGGAAAGAAAGGTAGAAGAATATCGTGAGATTGGGATGCGTCTGAAAGGATTTCCCGAAGAAGATGTCAGAAAAGCTAGAAAACTGGTTTCAAGCTTTATTAGAGCTGTTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCTGAGAAAGGGGAACTAACAGAGCTTGTTCTATTAGTCATATGGAATCGACTTGATTTAGCACGTCGTGATGATGAAAAGGATGCAATTAGAAGTCTTGATCTGCTATATCGAAGGGTTGAGACTGAAATTCTCAAACGAGAGGCTAGTCCTGCCATGAGACTGCTCAACGATCTTCTGAATATGTATGACAACTTCAACGATGAAGGATGGCTAAAAGACTGCAGAAAACGCATGATTGATACCTTCCCGCGGGAGGATCCATTTAGCATTCTCGTTCCAGCTGGATTCGACATCGATAAGCATCAAGGGCAGTTACGGCCATCACTTGAAGTTGAAGCTGATAATACACTGTTGAGAGTAGACTTCGTCAGAGAGGTTGATGAATTGCTACAAGAAGTCAGGGCGGATCAGAGTGAAGTGCAAAATGCAAATGCAGATGGTTTTGACGCGGAATCGGTGGCAAGTAGGTTGAAACATCAGGAGAAACAACGGTCGGTAAGGTTGGTAGAAACGCTGCTAGAGTTGGCTATGAATTTAGAGTGGTAG

Protein sequence

MLAQVLWLRCSPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEYYDDEWQARQREKTKELHRRRQEEDEEEERKVEEYREIGMRLKGFPEEDVRKARKLVSSFIRAVEEVEEKIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKREASPAMRLLNDLLNMYDNFNDEGWLKDCRKRMIDTFPREDPFSILVPAGFDIDKHQGQLRPSLEVEADNTLLRVDFVREVDELLQEVRADQSEVQNANADGFDAESVASRLKHQEKQRSVRLVETLLELAMNLEW

Homology

[Close]

BLAST of CmaCh02G018100 vs. ExPASy Swiss-Prot
Match: Q39089 (Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.5e-111
Identity = 214/315 (67.94%), Postives = 255/315 (80.95%), Query Frame = 0


Query: 1   MLAQVLWLRC-SPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEY 60
           M A  L L C SP+   P       KL+T   L + +++   R S + +E L++G+P EY
Sbjct: 1   MAATSLVLTCASPLFSSPRVISATKKLTTE--LSISTAKFRRRCSGNNDEVLLEGMPPEY 60

Query: 61  YDDEWQARQREKTKELHRRRQEEDEEEERKVEEYREIGMRLKGFPEEDVRKARKLVSSFI 120
           YDDEWQARQREKTKEL R ++EE+EEEERK+EEYREIG RLK FPE+D+RKARKLVSSFI
Sbjct: 61  YDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFI 120

Query: 121 RAVEEVEEKIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR 180
           RA EEVEE+IEEAAEKGEL ELVL++IWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR
Sbjct: 121 RAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR 180

Query: 181 EASPAMRLLNDLLNMYDNFNDEGWLKDCRKRMIDTFPREDPFSILVPAGFDIDKHQGQLR 240
           +ASPAM+LLNDLLNM+D F D+ WLKDCRKRM +TFPREDPFSIL+P GFDID HQGQLR
Sbjct: 181 QASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQGQLR 240

Query: 241 PSLEVEADNTLLRVDFVREVDELLQEVRADQSEVQNANADGFDAESVASRLKHQEKQRSV 300
           P +E E DNTLLRVDFVREVD LLQEVR ++     +  +G D E++A + K QEKQR++
Sbjct: 241 PPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQRTI 300

Query: 301 RLVETLLELAMNLEW 315
           R +E +L+LA+NL+W
Sbjct: 301 RQIEAILDLALNLKW 313

[Close]

BLAST of CmaCh02G018100 vs. TAIR 10
Match: AT2G48120.1 (pale cress protein (PAC) )

HSP 1 Score: 404.1 bits (1037), Expect = 1.1e-112
Identity = 214/315 (67.94%), Postives = 255/315 (80.95%), Query Frame = 0


Query: 1   MLAQVLWLRC-SPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEY 60
           M A  L L C SP+   P       KL+T   L + +++   R S + +E L++G+P EY
Sbjct: 1   MAATSLVLTCASPLFSSPRVISATKKLTTE--LSISTAKFRRRCSGNNDEVLLEGMPPEY 60

Query: 61  YDDEWQARQREKTKELHRRRQEEDEEEERKVEEYREIGMRLKGFPEEDVRKARKLVSSFI 120
           YDDEWQARQREKTKEL R ++EE+EEEERK+EEYREIG RLK FPE+D+RKARKLVSSFI
Sbjct: 61  YDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFI 120

Query: 121 RAVEEVEEKIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR 180
           RA EEVEE+IEEAAEKGEL ELVL++IWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR
Sbjct: 121 RAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR 180

Query: 181 EASPAMRLLNDLLNMYDNFNDEGWLKDCRKRMIDTFPREDPFSILVPAGFDIDKHQGQLR 240
           +ASPAM+LLNDLLNM+D F D+ WLKDCRKRM +TFPREDPFSIL+P GFDID HQGQLR
Sbjct: 181 QASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQGQLR 240

Query: 241 PSLEVEADNTLLRVDFVREVDELLQEVRADQSEVQNANADGFDAESVASRLKHQEKQRSV 300
           P +E E DNTLLRVDFVREVD LLQEVR ++     +  +G D E++A + K QEKQR++
Sbjct: 241 PPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQRTI 300

Query: 301 RLVETLLELAMNLEW 315
           R +E +L+LA+NL+W
Sbjct: 301 RQIEAILDLALNLKW 313

[Close]

BLAST of CmaCh02G018100 vs. TAIR 10
Match: AT2G48120.2 (pale cress protein (PAC) )

HSP 1 Score: 385.2 bits (988), Expect = 5.1e-107
Identity = 208/315 (66.03%), Postives = 249/315 (79.05%), Query Frame = 0


Query: 1   MLAQVLWLRC-SPVPPLPSASPTLPKLSTSYFLKLYSSRPVLRRSLSKEEPLIDGLPKEY 60
           M A  L L C SP+   P       KL+T   L + +++   R S + +E L++G+P EY
Sbjct: 1   MAATSLVLTCASPLFSSPRVISATKKLTTE--LSISTAKFRRRCSGNNDEVLLEGMPPEY 60

Query: 61  YDDEWQARQREKTKELHRRRQEEDEEEERKVEEYREIGMRLKGFPEEDVRKARKLVSSFI 120
           YDD      REKTKEL R ++EE+EEEERK+EEYREIG RLK FPE+D+RKARKLVSSFI
Sbjct: 61  YDD------REKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFI 120

Query: 121 RAVEEVEEKIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR 180
           RA EEVEE+IEEAAEKGEL ELVL++IWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR
Sbjct: 121 RAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKR 180

Query: 181 EASPAMRLLNDLLNMYDNFNDEGWLKDCRKRMIDTFPREDPFSILVPAGFDIDKHQGQLR 240
           +ASPAM+LLNDLLNM+D F D+ WLKDCRKRM +TFPREDPFSIL+P GFDID HQGQLR
Sbjct: 181 QASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQGQLR 240

Query: 241 PSLEVEADNTLLRVDFVREVDELLQEVRADQSEVQNANADGFDAESVASRLKHQEKQRSV 300
           P +E E DNTLLRVDFVREVD LLQEVR ++     +  +G D E++A + K QEKQR++
Sbjct: 241 PPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQRTI 300

Query: 301 RLVETLLELAMNLEW 315
           R +E +L+LA+NL+W
Sbjct: 301 RQIEAILDLALNLKW 307

The following BLAST results are available for this feature:

BLAST of CmaCh02G018100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39089	1.5e-111	67.94	Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV...	[more]

BLAST of CmaCh02G018100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G48120.1	1.1e-112	67.94	pale cress protein (PAC)	[more]
AT2G48120.2	5.1e-107	66.03	pale cress protein (PAC)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 115..142
None	No IPR available	COILS	Coil	Coil	coord: 259..279
IPR034563	Protein PALE CRESS	PANTHER	PTHR37219	PROTEIN PALE CRESS, CHLOROPLASTIC	coord: 2..314

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G018100.1	CmaCh02G018100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0010239	chloroplast mRNA processing
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:2000762	regulation of phenylpropanoid metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0048366	leaf development
cellular_component	GO:0009501	amyloplast
cellular_component	GO:0042644	chloroplast nucleoid
cellular_component	GO:0009509	chromoplast
cellular_component	GO:0009513	etioplast
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0009537	proplastid
cellular_component	GO:0009536	plastid
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0019843	rRNA binding