CmaCh02G017780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G017780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Histone H2A
Location	Cma_Chr02: 9904511 .. 9906704 (+)
RNA-Seq Expression	CmaCh02G017780
Synteny	CmaCh02G017780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAAGCAAACCGCCAAGACGAGAAAGGAAGGCATTGAAAAAGCAAAAGCGATCCAACCAGCGCACAAAACCCACTCTTCTCTCATTCCTTCTCTGCTTCCACCATCTCCAGGTTTCCTCTTTCTCTCTTCTTTTCATCTCCAGATTTTGTTTCTGTCTTCAATGTACTAAACGGGGATTTTACTCTGCTCCACATGTTTATCTGAATGCTCTTACCACTTTGCAGGCTCAAAAATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGGTGTTCTTTTGAATTCTTACTCCGCCTTTTTTTCCTCCAAAATTTGGATGCAATTGAAACGTCCAAGCATGTTTAATTTTTCCTCATCTGCTGAAGACCTGTGAATTTCGAATGATTTTGATATTTTACTCGTGTAAGGACATTACAACGACTGAGATAAGGTTATGTTTATGTTGCTGTATTTTGCGATCTTTGTTCCTTGAAATTGTTACTGTGATAGCATTTTTTTGTTGATAGCTAAGTATTTTAACATGGGGCTCTGAAATCTTTTTCAGTTCTTGGTTTAGGGGAAGTGTAAGCTAGTTTTTTATAGGTTGGGCTAACAATTCGCAATTCAAATCCCCATGTTGTTTTATTTTTAAGCTACATGTTGTTGAGATTTGTACAATTATGTTGAGATGTATCTGCCTATGTGGATCTGTGTTCCTTAAATTTGTACTACAATACAATTTTTTGTTGACAGCTTTGAATTTTAATACGGGTCTCTGAAAATTCTTCTAATTATCTGCTTTTGGAGGGATGTGCAAGCTCGTTTTTGTGGGTTGGGCTGAAAATTCGCAATTCACTTTTTAATCTACTTGTAGTTAAGCTTAGTACAATTTTGTTGCACCCTTTTTTATTGACAGCCTTGAACTTTAACATGGGACTCTGAAATCTATTTTAAATTTTTTTTAGGTGAGAAAGTGTAAGCTAGATTTTTTTTTTCTTTTCTTTTTTTGTGGGTTGGGCTGAAAAATTCTGAATTACAATGCTCTAGTTTTTGAGTAACATGTAGTTAAGATTAGTATAACTAACTATGTTGATGTATCTACACCTTGTGATCTATGTTCTTCGAACTTTGACTGTATTGCCATTTTTTGTTGACAGCTTTGAATTTAACTAGTGTTTTGTGGGTTGGGATAAAAGTTTAGAATTCAAATGCCCATGTACTTTGAGTATTGTGATATTTTGTAGTTAACATGTGGTTTGAATTTAACTAGTGTTTTGTAGTTAACATGATTTCATTGATGTTGGTGTCTCTGGGTATTGTGGTATTTGTTCGTTTAATTTTTATTCTAATAGCACATTTTGTTATCAGCTTTGAATTTTAACATGGGGCTCTGAAATGTAATCTTCTGTAAACTATTATTTGTTTTATGGCGAAAGTGTAAGCTTGTGTTTTGTGGGCTGGGCTGAAAATTTACAATTCAAATGCCCTTGTAGTGTTTTATTTGTAAGCTACATTTGGGTTGAGTTCAAATGATTTCACTTAATTTGGGGCCTTGAATCGCACCAGTGTTGGGTCATTTAAGTTATGTAATCTCCGGATTGTGGGGTTCTAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGATGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGAGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGAGACATTCACTTGTATCACCAAGTAGTTTAGCTTAATCTTCAGACATCTACTACTGGCATCCAAGGATTGACACATTCATTCCTTGCATGCTTTTGTGAAGCCTTGTTATTATTTTCCCTCTTCCTTCTTTTGTGTATTTGGACAAGTATATTTGTTCAGTGTAAGGTTGTTATGTTTTGTTGGATGGTTTTTAATTTACCTTACTCTCCACAAGTTCATATCTTCA

mRNA sequence

CCAAAAGCAAACCGCCAAGACGAGAAAGGAAGGCATTGAAAAAGCAAAAGCGATCCAACCAGCGCACAAAACCCACTCTTCTCTCATTCCTTCTCTGCTTCCACCATCTCCAGGCTCAAAAATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGATGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGAGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGAGACATTCACTTGTATCACCAAGTAGTTTAGCTTAATCTTCAGACATCTACTACTGGCATCCAAGGATTGACACATTCATTCCTTGCATGCTTTTGTGAAGCCTTGTTATTATTTTCCCTCTTCCTTCTTTTGTGTATTTGGACAAGTATATTTGTTCAGTGTAAGGTTGTTATGTTTTGTTGGATGGTTTTTAATTTACCTTACTCTCCACAAGTTCATATCTTCA

Coding sequence (CDS)

ATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGATGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGAGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGA

Protein sequence

MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKD

Homology

[Close]

BLAST of CmaCh02G017780 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.5e-64
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AANKDKDKDKKKPISRS+RAGIQFPVGRIHR LKTR+SA+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK +K+
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]

BLAST of CmaCh02G017780 vs. ExPASy Swiss-Prot
Match: Q9SII0 (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-59
Identity = 121/136 (88.97%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]

BLAST of CmaCh02G017780 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-59
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAAN--KDKDKDKKK-PISRSSRAGIQFPVGRIHRHLKTRISANGR 60
           MAGKGGKGLLAAKT AA    DKDKD+KK P+SRSSRAGIQFPVGRIHR LK R+SANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKASKD 137
           GGGVIPHIHKSLINK +K+
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]

BLAST of CmaCh02G017780 vs. ExPASy Swiss-Prot
Match: Q8H7Y8 (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-59
Identity = 123/138 (89.13%), Postives = 130/138 (94.20%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAA-NKDKDKDKKK-PISRSSRAGIQFPVGRIHRHLKTRISANGRV 60
           MAGKGGKGLLAAKT AA + DKDKDKKK P+SRSSRAG+QFPVGRIHR LK+R SA+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKASKD 137
           GGVIPHIHKSLINK SK+
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]

BLAST of CmaCh02G017780 vs. ExPASy Swiss-Prot
Match: Q84MP7 (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 120/137 (87.59%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAA-NKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVG 60
           MAGKGGKGLLAAKT AA + +KDK KK P+SRSSRAG+QFPVGRIHR LK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKASKD 137
           GVIPHIHKSLINK+SK+
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]

BLAST of CmaCh02G017780 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-65
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AANKDKDKDKKKPISRS+RAGIQFPVGRIHR LKTR+SA+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK +K+
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]

BLAST of CmaCh02G017780 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 121/136 (88.97%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]

BLAST of CmaCh02G017780 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 121/136 (88.97%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]

BLAST of CmaCh02G017780 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 121/136 (88.97%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSL+NK +KD
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]

BLAST of CmaCh02G017780 vs. TAIR 10
Match: AT1G52740.1 (histone H2A protein 9 )

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           M+GKG KGL+  K   +  DKDKDKKKPI+RSSRAG+QFPVGR+HR LKTR +A+GRVGA
Sbjct: 1   MSGKGAKGLIMGK--PSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKASKD 137
           VIPHIHKSLINK++K+
Sbjct: 121 VIPHIHKSLINKSAKE 134

The following BLAST results are available for this feature:

BLAST of CmaCh02G017780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23628	6.5e-64	92.65	Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1	[more]
Q9SII0	1.3e-59	88.97	Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2...	[more]
Q8S857	2.2e-59	88.49	Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g...	[more]
Q8H7Y8	2.8e-59	89.13	Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]
Q84MP7	1.1e-58	87.59	Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g...	[more]

BLAST of CmaCh02G017780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54560.1	4.6e-65	92.65	histone H2A 11	[more]
AT2G38810.1	9.0e-61	88.97	histone H2A 8	[more]
AT2G38810.3	9.0e-61	88.97	histone H2A 8	[more]
AT2G38810.2	9.0e-61	88.97	histone H2A 8	[more]
AT1G52740.1	1.0e-56	82.35	histone H2A protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 113..131 score: 51.98 coord: 57..72 score: 69.94 coord: 86..100 score: 65.78 coord: 72..85 score: 84.63 coord: 27..49 score: 68.12
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 16..136 e-value: 7.9E-69 score: 244.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 28..132 e-value: 3.40876E-56 score: 169.053
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 16..136 e-value: 5.1E-56 score: 189.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..113
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 106..135 e-value: 1.1E-10 score: 41.0
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 14..105 e-value: 1.2E-20 score: 74.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR23430:SF237	HISTONE H2A VARIANT 1	coord: 2..134
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G017780.1	CmaCh02G017780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity