Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACCCCAATTTCCCTCCTCGTACTCGCGCGCTCATTCTCTTCCCTCCATTTCTCTCTCTCTTTATTTTTTCTCTCTCCCTTTTTTCGATCTCTAGGAGCTGAGTGTAACTCCAACTCATTGGCAAACACGAAGCAGCCCCAAATTCCGGTACCTTTTCAGTAATCAGAGACATGGACTCCGACGAGGGGAAGCTTTTCATCGGAGGAATAGCTTGGGACACTTCCGAGGAGACGCTCAGAGGCTATTTCGCCCAATTTGGCGAAGTTATCCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCTCGAGGCTTTGGGTTTGTCGTTTTCTCTGATTCTTCAGTTCTTGATCAGGTGCTTCAGGATAAGCACACAATCGATGGCCGCCAGGTTTTGCCTTCTTCTTCTGTAATTTATATCTGCATTACTTCGTTGCTTTATTAGGTTATGTTTTTTCTCGACGGTTTTTCTTTTTGTTGTTCTCATAATGGGGGTTTCGAGGAACATATTCTTGTGGGACTAGACCGTCAAATTGCTTTAATTTAGGAGCTCATTATTTACAGTGGCGCTGTAGTAAGACTCACTCTCAGTCTCTCACTTGTATTTCATCAGCTCATAATTGGTTTACTGTTATTGATCCTGGCATCAAAGTGGTCCTAAACAGTAAGAAACGGTCAGAATAGTTATTGTTTGGGTTATTTCGTCTCTATCCCCTCTTCCTCTCTCAACTGCAAGGGAAGTTGGGATTGTGTAATGTGGATCATTTTTTTTTTATGGGTAACCTTCTCAACTTTGTAGTTATCTCCGTCCATTTGTTTACGTGTTCTAAGGGTTCTAGACGGGCAGTTTCATGAGTACTTTTAGTAGCGGATTGAAAGGTTTATTCTATCGTTATCATTCGTTTGATACCGGAACACATAAACAGCATCCTGTCCGGCTGATATTGAACTCTCATGTGGTAATACCTCACCCTGTACTAGACATCGCCTTGTTTTTTAGACCAAAAGAGAGTGTACCACTACTTTGTAAGGGAACCTATATGCTTGAGAAGTTGATTAGCACATGCCTTCCTGGTAAGTAATATATTGTGGCATACCATTATGATTGTGTTGGCAGGTTTAAATTAACAAAAGTTCTGTTAGTCTGTTTGCATATGTCTGGGATACAAGGACAGTGAGGGAATCAAAATATATCAACTTGACCCATTGATTATTTTAAAATGCTTTTGAAAATCTTGCAACATATCATATGCTCATTATGATAACTGATAAATATGTATTTTATTTGCTTTCCCGTGAGTGTTTTCAGCAATTTCTAGTTGTGCTTTGTTGACACAGGTGGAGGCAAAAAGGGCTTTATCAAGAGAGGAACAGCAAACTTCCTCAAGAAGTGGGAGCTATAACTCCGGCAGAAGCTCTGGAGGTAGTGGATATTTTAAGACCAAAAAAATATTTGTTGGCGGTCTACCTTCGGCACTAACAGAAGATGGGTTCCGGCAGTATTTTGAAAATTATGGCCAAGTAACTGATGTAGTGATTATGTATGACCAAAATACTCAGAGACCTCGTGGATTTGGTTTCATAACATTTGACAATGAAGATGCAGTTGATAGAGTACTTTGTAAGAGCTTTCATGAACTGAATGGTAAACTTGTAGAGGTGAAACGGGCACTTCCTAAGGATGCAAATCCAGGAAGTGGTTGCCGTGGAGGCTATCAAAATTATGGTTCTGGCACTAACGCTAATAACTTTGATGGTAGATCAGATGGCAATAGATATATGCAAGCTCAGTCTACTGCTGGTGGTTTCCCACCATATTCTGGATATGGTGTTTCAAGTTATGGTTATGGAGGACCAAACAGTGGTGTTCCTTATGGAAGTTATGGTAGTTATGGTGTTGGTATGTATGGTGGCGCTAGTGCTGGATTTGGTGGTCCAGCTGTACCATTTGGAAATCCAACTGCAGTCAATGCTGGTTATCTAAGTGGAGCACATGGCGCGATGAAAAGTTCTTGGACCAACCAAGCTCCAGGATATGGTGGTCCTGGCTATGGTGCTAGTCCAGGCTTTGGGGCTGCAGCTCCTTGGAGTGCCTCAGGTACTGGTGTACCTCCTTCTGCCCCAAGGGGCCAATCTCCTAGTGGGGCTTCTGGATATGGGAATCAAGGTTATTATGGTGGAAACGATGGTCCTTATGGTGGCTATGGAACCTCTGGAGGACGAGCTACAAGTGCTCCAAATAGCAATGTTGGTAGCGGTCAAAGTGGAGAGCCACATGGCACGAGTGGTGGGTACATGGGGAGTGGATATGATGACACTAATGGAAATTCAGGTTACTCTAGTGGTGGCTGGAGATCCGATGCTTCACAGACTCCTGGTGGTTATGGTGGTGGTTATGGTGGCACTCAGTCTAGGCATGGTTAA
mRNA sequence
TAACCCCAATTTCCCTCCTCGTACTCGCGCGCTCATTCTCTTCCCTCCATTTCTCTCTCTCTTTATTTTTTCTCTCTCCCTTTTTTCGATCTCTAGGAGCTGAGTGTAACTCCAACTCATTGGCAAACACGAAGCAGCCCCAAATTCCGGTACCTTTTCAGTAATCAGAGACATGGACTCCGACGAGGGGAAGCTTTTCATCGGAGGAATAGCTTGGGACACTTCCGAGGAGACGCTCAGAGGCTATTTCGCCCAATTTGGCGAAGTTATCCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCTCGAGGCTTTGGGTTTGTCGTTTTCTCTGATTCTTCAGTTCTTGATCAGGTGCTTCAGGATAAGCACACAATCGATGGCCGCCAGGTGGAGGCAAAAAGGGCTTTATCAAGAGAGGAACAGCAAACTTCCTCAAGAAGTGGGAGCTATAACTCCGGCAGAAGCTCTGGAGGTAGTGGATATTTTAAGACCAAAAAAATATTTGTTGGCGGTCTACCTTCGGCACTAACAGAAGATGGGTTCCGGCAGTATTTTGAAAATTATGGCCAAGTAACTGATGTAGTGATTATGTATGACCAAAATACTCAGAGACCTCGTGGATTTGGTTTCATAACATTTGACAATGAAGATGCAGTTGATAGAGTACTTTGTAAGAGCTTTCATGAACTGAATGGTAAACTTGTAGAGGTGAAACGGGCACTTCCTAAGGATGCAAATCCAGGAAGTGGTTGCCGTGGAGGCTATCAAAATTATGGTTCTGGCACTAACGCTAATAACTTTGATGGTAGATCAGATGGCAATAGATATATGCAAGCTCAGTCTACTGCTGGTGGTTTCCCACCATATTCTGGATATGGTGTTTCAAGTTATGGTTATGGAGGACCAAACAGTGGTGTTCCTTATGGAAGTTATGGTAGTTATGGTGTTGGTATGTATGGTGGCGCTAGTGCTGGATTTGGTGGTCCAGCTGTACCATTTGGAAATCCAACTGCAGTCAATGCTGGTTATCTAAGTGGAGCACATGGCGCGATGAAAAGTTCTTGGACCAACCAAGCTCCAGGATATGGTGGTCCTGGCTATGGTGCTAGTCCAGGCTTTGGGGCTGCAGCTCCTTGGAGTGCCTCAGGTACTGGTGTACCTCCTTCTGCCCCAAGGGGCCAATCTCCTAGTGGGGCTTCTGGATATGGGAATCAAGGTTATTATGGTGGAAACGATGGTCCTTATGGTGGCTATGGAACCTCTGGAGGACGAGCTACAAGTGCTCCAAATAGCAATGTTGGTAGCGGTCAAAGTGGAGAGCCACATGGCACGAGTGGTGGGTACATGGGGAGTGGATATGATGACACTAATGGAAATTCAGGTTACTCTAGTGGTGGCTGGAGATCCGATGCTTCACAGACTCCTGGTGGTTATGGTGGTGGTTATGGTGGCACTCAGTCTAGGCATGGTTAA
Coding sequence (CDS)
ATGGACTCCGACGAGGGGAAGCTTTTCATCGGAGGAATAGCTTGGGACACTTCCGAGGAGACGCTCAGAGGCTATTTCGCCCAATTTGGCGAAGTTATCCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCTCGAGGCTTTGGGTTTGTCGTTTTCTCTGATTCTTCAGTTCTTGATCAGGTGCTTCAGGATAAGCACACAATCGATGGCCGCCAGGTGGAGGCAAAAAGGGCTTTATCAAGAGAGGAACAGCAAACTTCCTCAAGAAGTGGGAGCTATAACTCCGGCAGAAGCTCTGGAGGTAGTGGATATTTTAAGACCAAAAAAATATTTGTTGGCGGTCTACCTTCGGCACTAACAGAAGATGGGTTCCGGCAGTATTTTGAAAATTATGGCCAAGTAACTGATGTAGTGATTATGTATGACCAAAATACTCAGAGACCTCGTGGATTTGGTTTCATAACATTTGACAATGAAGATGCAGTTGATAGAGTACTTTGTAAGAGCTTTCATGAACTGAATGGTAAACTTGTAGAGGTGAAACGGGCACTTCCTAAGGATGCAAATCCAGGAAGTGGTTGCCGTGGAGGCTATCAAAATTATGGTTCTGGCACTAACGCTAATAACTTTGATGGTAGATCAGATGGCAATAGATATATGCAAGCTCAGTCTACTGCTGGTGGTTTCCCACCATATTCTGGATATGGTGTTTCAAGTTATGGTTATGGAGGACCAAACAGTGGTGTTCCTTATGGAAGTTATGGTAGTTATGGTGTTGGTATGTATGGTGGCGCTAGTGCTGGATTTGGTGGTCCAGCTGTACCATTTGGAAATCCAACTGCAGTCAATGCTGGTTATCTAAGTGGAGCACATGGCGCGATGAAAAGTTCTTGGACCAACCAAGCTCCAGGATATGGTGGTCCTGGCTATGGTGCTAGTCCAGGCTTTGGGGCTGCAGCTCCTTGGAGTGCCTCAGGTACTGGTGTACCTCCTTCTGCCCCAAGGGGCCAATCTCCTAGTGGGGCTTCTGGATATGGGAATCAAGGTTATTATGGTGGAAACGATGGTCCTTATGGTGGCTATGGAACCTCTGGAGGACGAGCTACAAGTGCTCCAAATAGCAATGTTGGTAGCGGTCAAAGTGGAGAGCCACATGGCACGAGTGGTGGGTACATGGGGAGTGGATATGATGACACTAATGGAAATTCAGGTTACTCTAGTGGTGGCTGGAGATCCGATGCTTCACAGACTCCTGGTGGTTATGGTGGTGGTTATGGTGGCACTCAGTCTAGGCATGGTTAA
Protein sequence
MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEVKRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSSYGYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVPFGNPTAVNAGYLSGAHGAMKSSWTNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGYGNQGYYGGNDGPYGGYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDDTNGNSGYSSGGWRSDASQTPGGYGGGYGGTQSRHG
Homology
BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match:
Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)
HSP 1 Score: 396.0 bits (1016), Expect = 5.6e-109
Identity = 253/455 (55.60%), Postives = 300/455 (65.93%), Query Frame = 0
Query: 1 MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
MDSD+GKLF+GGI+W+T E+ LR +F +GEV QA++MRDK TGRPRGFGFV+FSD SVL
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
D+VLQ+KH+ID R+V+ KRA+SREEQQ S R+G+ N+ RSSGG Y KTKKIFVGGLP
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
LT++ FRQYFE YG VTDV IMYDQ T RPRGFGF++FD+EDAVD VL K+FH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 181 EVKRALPKDANPGSGCR-------GGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPP 240
EVKRALPKDANPG G R GGYQ YG N +++DGR D NR++Q QS G P
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGYQGYGG--NESSYDGRMDSNRFLQHQSVGNGLPS 240
Query: 241 Y--SGYGVSSYGYGGPNSGVPYGSYGSY--GVGMYG-GASAGFGGPAVPFGNPTAVNAGY 300
Y SGYG GYG ++G YG+YG Y G YG GA+AG+G +P AGY
Sbjct: 241 YGSSGYGA---GYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIP-------GAGY 300
Query: 301 LSGAHGAMKSSW-TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGY 360
S A ++SW T + GYG PGYG+ GAA SG GVP +AP QSP SGY
Sbjct: 301 GSSTGVAPRNSWDTPASSGYGNPGYGS----GAA----HSGYGVPGAAPPTQSP---SGY 360
Query: 361 GNQGY----YGGNDGPYG---GYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDD 420
NQGY Y G+D YG YG GGR + ++N G SGGYMG GY D
Sbjct: 361 SNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNNPG----------SGGYMGGGYGD 410
Query: 421 TNGNSGYSSGGWRSDASQTPGGYGGGYGGTQSRHG 436
G WRSD SQ GYGGGY Q R G
Sbjct: 421 ---------GSWRSDPSQ---GYGGGYNDGQGRQG 410
BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match:
Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 6.5e-41
Identity = 129/345 (37.39%), Postives = 176/345 (51.01%), Query Frame = 0
Query: 6 GKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQ 65
GKLF+GG+ W T++ETLR YF+Q+GEV+ VIM+DKTT + RGFGFV F D + + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HTIDGRQVEAKRALSR--EEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALT 125
+ HT+DGR ++ K R + +++ R G + S ++ KIFVGG+P
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENS---RSNKIFVGGIPHNCG 129
Query: 126 EDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEV 185
E ++YF +G VT+VV++YD QRPRGFGFITF++E +VD+ + FH++ GK VEV
Sbjct: 130 ETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 189
Query: 186 KRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGF---PPYSGYGV 245
KRA P+D+ + G +GS QSTA G+ PP + G
Sbjct: 190 KRAEPRDSKSQTPGPPGSNQWGS----------------RAMQSTANGWTGQPPQTWQGY 249
Query: 246 SSYGYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVPFGNPTAVNAGYLSGAHGAMKSS 305
S G P +G G YG AG GGP P A +L
Sbjct: 250 SPQGMWMP-TGQTIGGYGQ---------PAGRGGPP-----PPPSFAPFLVSTTPGPFPP 309
Query: 306 WTNQAPGYGGP---GYGASPGFGAAAPWSASGTGVPPSAPRGQSP 342
PGY P GYG P + +SG PP P G +P
Sbjct: 310 PQGFPPGYATPPPFGYGYGPPPPPPDQFVSSGVPPPPGTP-GAAP 319
BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match:
P51989 (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis OX=8355 PE=2 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 5.5e-40
Identity = 131/371 (35.31%), Postives = 182/371 (49.06%), Query Frame = 0
Query: 7 KLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQD 66
KLFIGG++++T+EE+LR Y+ Q+G + V+MRD + R RGFGFV FS + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 67 K-HTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALTEDG 126
+ HTIDGR VE KRA++REE S++ G+ + KK+FVGG+ E
Sbjct: 70 RPHTIDGRVVEPKRAVAREE---SAKPGA-----------HVTVKKLFVGGIKEDTEEHH 129
Query: 127 FRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEVKRA 186
R+YFE YG++ + I+ D+ + + RGF F+TFD+ D VD+++ + +H +NG EV++A
Sbjct: 130 LREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 189
Query: 187 LPK----DANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSS 246
L K D RGG +G NF GN + GG GYG +
Sbjct: 190 LSKQEMQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGG----RGYGDNG 249
Query: 247 Y-GYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVPFGNPTAVNAGYLSGAHGAMKSSW 306
Y GYGG G YG SYG GG G+GG A +GN GY G
Sbjct: 250 YNGYGGGQGGGNYGGGPSYG----GGRGGGYGGGA-GYGNQ---GGGYGGG--------- 309
Query: 307 TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPP---------SAPRGQSPSGASGYGNQG 363
YGG YG + ++ + P + G P G YG
Sbjct: 310 ---YDNYGGGNYGGGGNYNDFGNYNQQSSNYGPMKSGGNFGGNRSMGGGPYGGGNYGPGN 342
BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match:
Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)
HSP 1 Score: 164.9 bits (416), Expect = 2.1e-39
Identity = 148/419 (35.32%), Postives = 197/419 (47.02%), Query Frame = 0
Query: 6 GKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQ 65
GKLF+GG+ W T++ETLR YF+Q+GEV+ VIM+DKTT + RGFGFV F D + + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HTIDGRQVEAKRALSR--EEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALT 125
+ HT+DGR ++ K R + ++T + G RS K+ KIFVGG+P
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSS----KSNKIFVGGIPHNCG 129
Query: 126 EDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEV 185
E R+YF+ +G VT+VV++YD QRPRGFGFITF++E +VD+ + FH++ GK VEV
Sbjct: 130 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 189
Query: 186 KRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSSY 245
KRA P+D+ + + G +GS + A AG PP
Sbjct: 190 KRAEPRDSKNQAPGQPGASQWGSRVAPS------------AANGWAGQPPP-----TWQQ 249
Query: 246 GYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVP--------------FGNPTAVNAGY 305
GYG VP G +G YG AG G P P F P GY
Sbjct: 250 GYGPQGMWVPAGQ----AIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGY 309
Query: 306 LSGAHGAMKSSWTNQAP---GYGGPGYGASPGFGAAAP--------WSASGTGVPPSAPR 365
GA + P + PG P AAP +A PP+A +
Sbjct: 310 --GAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTA-Q 369
Query: 366 GQSPSGASGYG------NQGYYGGNDGP--YGGYGTSGGRATSAPNSNVGSGQSGEPHG 389
P G GYG QG+ + P YGG G A S G GQ+ G
Sbjct: 370 PDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 400
BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match:
Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 6.1e-39
Identity = 149/419 (35.56%), Postives = 196/419 (46.78%), Query Frame = 0
Query: 6 GKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQ 65
GKLF+GG+ W T++ETLR YF+Q+GEV+ VIM+DKTT + RGFGFV F D + + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HTIDGRQVEAKRALSR--EEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALT 125
+ HT+DGR ++ K R + ++T + G RS K+ KIFVGG+P
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS----KSNKIFVGGIPHNCG 129
Query: 126 EDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEV 185
E R+YF+ +G VT+VV++YD QRPRGFGFITF++E +VD+ + FH++ GK VEV
Sbjct: 130 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 189
Query: 186 KRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSSY 245
KRA P+D+ + + G +GS N A AG PP
Sbjct: 190 KRAEPRDSKSQAPGQPGASQWGSRVVPN------------AANGWAGQPPP-----TWQQ 249
Query: 246 GYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVP--------------FGNPTAVNAGY 305
GYG VP G +G YG AG G P P F P GY
Sbjct: 250 GYGPQGMWVPAGQ----AIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGY 309
Query: 306 LSGAHGAMKSSWTNQAP---GYGGPGYGASPGFGAAAPWSASGTGVPPS--APRGQSPSG 365
GA + P + PG P AAP + PPS AP P
Sbjct: 310 --GAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFP---PPPSQAAPDMSKPPT 369
Query: 366 ASGYGNQGYYGGNDGPYGGYGTSGGRATSAPNSNVG---SGQSGEPHGTSGGYMGSGYD 400
A G Y G G+G + P S G G G P G SG G ++
Sbjct: 370 AQPDFPYGQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHN 398
BLAST of CmaCh02G017280 vs. TAIR 10
Match:
AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 396.0 bits (1016), Expect = 4.0e-110
Identity = 253/455 (55.60%), Postives = 300/455 (65.93%), Query Frame = 0
Query: 1 MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
MDSD+GKLF+GGI+W+T E+ LR +F +GEV QA++MRDK TGRPRGFGFV+FSD SVL
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
D+VLQ+KH+ID R+V+ KRA+SREEQQ S R+G+ N+ RSSGG Y KTKKIFVGGLP
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
LT++ FRQYFE YG VTDV IMYDQ T RPRGFGF++FD+EDAVD VL K+FH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 181 EVKRALPKDANPGSGCR-------GGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPP 240
EVKRALPKDANPG G R GGYQ YG N +++DGR D NR++Q QS G P
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGYQGYGG--NESSYDGRMDSNRFLQHQSVGNGLPS 240
Query: 241 Y--SGYGVSSYGYGGPNSGVPYGSYGSY--GVGMYG-GASAGFGGPAVPFGNPTAVNAGY 300
Y SGYG GYG ++G YG+YG Y G YG GA+AG+G +P AGY
Sbjct: 241 YGSSGYGA---GYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIP-------GAGY 300
Query: 301 LSGAHGAMKSSW-TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGY 360
S A ++SW T + GYG PGYG+ GAA SG GVP +AP QSP SGY
Sbjct: 301 GSSTGVAPRNSWDTPASSGYGNPGYGS----GAA----HSGYGVPGAAPPTQSP---SGY 360
Query: 361 GNQGY----YGGNDGPYG---GYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDD 420
NQGY Y G+D YG YG GGR + ++N G SGGYMG GY D
Sbjct: 361 SNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNNPG----------SGGYMGGGYGD 410
Query: 421 TNGNSGYSSGGWRSDASQTPGGYGGGYGGTQSRHG 436
G WRSD SQ GYGGGY Q R G
Sbjct: 421 ---------GSWRSDPSQ---GYGGGYNDGQGRQG 410
BLAST of CmaCh02G017280 vs. TAIR 10
Match:
AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 372.1 bits (954), Expect = 6.2e-103
Identity = 233/442 (52.71%), Postives = 287/442 (64.93%), Query Frame = 0
Query: 1 MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
M+SD+GKLFIGGI+WDT E LR YF+ FGEV+Q +MR+K TGRPRGFGFV FSD +V+
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
D+VLQDKH ID R V+ KRA+SREEQ + RSG++N+ R+ +TKKIFVGGLP A
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
LT D FR YFE YG V+D VIM DQ TQRPRGFGF++FD+ED+VD VL K+FH+LNGK V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 181 EVKRALPKDANP--------GSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFP 240
EVKRALPKDANP GSG GG+ YG G+ + ++GR D NRYMQ Q+T G+P
Sbjct: 181 EVKRALPKDANPGIASGGGRGSGGAGGFPGYG-GSGGSGYEGRVDSNRYMQPQNTGSGYP 240
Query: 241 PYSGYGVSSYGYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPA-VPFGNPTAVNAGYLSG 300
PY G G + GYG ++GV YG +G G+G PA P+GNP+ AG+ SG
Sbjct: 241 PYGGSGYGT-GYGYGSNGVGYGGFG------------GYGNPAGAPYGNPSVPGAGFGSG 300
Query: 301 AHGAMKSSWTNQAP-GYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGYGNQ 360
+SSW QAP GYG GY G AAPW G+G P SA GQ+ + A GYG+Q
Sbjct: 301 P----RSSWGAQAPSGYGNVGY------GNAAPW--GGSGGPGSAVMGQAGASA-GYGSQ 360
Query: 361 GY-YGGNDGPYG---GYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDDTNGNSG 420
GY YGGND YG YG GGR+ + PN++ G G + G+ GY + GN+G
Sbjct: 361 GYGYGGNDSSYGTPSAYGAVGGRSGNMPNNHGGGGYADALDGS------GGYGNHQGNNG 396
Query: 421 YSSGGWRSDASQTPGGYGGGYG 429
+ GYGGGYG
Sbjct: 421 QA-------------GYGGGYG 396
BLAST of CmaCh02G017280 vs. TAIR 10
Match:
AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 236.5 bits (602), Expect = 4.0e-62
Identity = 204/475 (42.95%), Postives = 262/475 (55.16%), Query Frame = 0
Query: 1 MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
M SD GKLFIGGI+WDT+EE L+ YF+ FGEVI+AVI++D+TTGR RGFGFVVF+D +V
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
+ V+ +KH IDGR VEAK+A+ R++Q +RS S + S GG G +T+KIFVGGLPS+
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG--RTRKIFVGGLPSS 120
Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
+TE F+ YFE +G TDVV+MYD NTQRPRGFGFIT+D+E+AV++VL K+FHELNGK+V
Sbjct: 121 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 180
Query: 181 EVKRALPKDANPG---SGCRGGYQNYGSGTNANNFDGRSDG--------------NRYMQ 240
EVKRA+PK+ +PG S GY +YG N +G + G R+
Sbjct: 181 EVKRAVPKELSPGPSRSPLGAGY-SYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSP 240
Query: 241 AQSTAGGFPPY-SGYGVS-SYGYGGP---NSGVPYGSYGSYGVGM---YGGASAGFGGPA 300
+ GF Y SGYG++ ++ G P G Y YG GM Y G + F GPA
Sbjct: 241 VGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRF-GPA 300
Query: 301 VPF-GNPTAVNAGYLSGAHGAMKSSWTNQAPGYGGPGY---GASPGFGAAAPWSASGTGV 360
V + G N+ + S ++ W N GG Y + S+SG
Sbjct: 301 VGYEGGNGGGNSSFFS---SVTRNLWGNN----GGLNYNNNNTNSNSNTYMGGSSSGNNT 360
Query: 361 PPSAPRGQSPS--GASGYGNQGY--------YGGNDGPYGGYGTSGGRATSAPNSN---V 420
S P G S GA G GN YGGN G GT GG A P +N
Sbjct: 361 -LSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT-GGYAARNPGANKAAP 420
Query: 421 GSGQSGEPHGTSGGYMGSGYDDTNGNSG-YSSGGWRSDASQTPG------GYGGG 427
S S + GY +G + GN YS WRS +T G G GGG
Sbjct: 421 SSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGG 462
BLAST of CmaCh02G017280 vs. TAIR 10
Match:
AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 236.5 bits (602), Expect = 4.0e-62
Identity = 204/475 (42.95%), Postives = 262/475 (55.16%), Query Frame = 0
Query: 1 MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
M SD GKLFIGGI+WDT+EE L+ YF+ FGEVI+AVI++D+TTGR RGFGFVVF+D +V
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
+ V+ +KH IDGR VEAK+A+ R++Q +RS S + S GG G +T+KIFVGGLPS+
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG--RTRKIFVGGLPSS 120
Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
+TE F+ YFE +G TDVV+MYD NTQRPRGFGFIT+D+E+AV++VL K+FHELNGK+V
Sbjct: 121 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 180
Query: 181 EVKRALPKDANPG---SGCRGGYQNYGSGTNANNFDGRSDG--------------NRYMQ 240
EVKRA+PK+ +PG S GY +YG N +G + G R+
Sbjct: 181 EVKRAVPKELSPGPSRSPLGAGY-SYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSP 240
Query: 241 AQSTAGGFPPY-SGYGVS-SYGYGGP---NSGVPYGSYGSYGVGM---YGGASAGFGGPA 300
+ GF Y SGYG++ ++ G P G Y YG GM Y G + F GPA
Sbjct: 241 VGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRF-GPA 300
Query: 301 VPF-GNPTAVNAGYLSGAHGAMKSSWTNQAPGYGGPGY---GASPGFGAAAPWSASGTGV 360
V + G N+ + S ++ W N GG Y + S+SG
Sbjct: 301 VGYEGGNGGGNSSFFS---SVTRNLWGNN----GGLNYNNNNTNSNSNTYMGGSSSGNNT 360
Query: 361 PPSAPRGQSPS--GASGYGNQGY--------YGGNDGPYGGYGTSGGRATSAPNSN---V 420
S P G S GA G GN YGGN G GT GG A P +N
Sbjct: 361 -LSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT-GGYAARNPGANKAAP 420
Query: 421 GSGQSGEPHGTSGGYMGSGYDDTNGNSG-YSSGGWRSDASQTPG------GYGGG 427
S S + GY +G + GN YS WRS +T G G GGG
Sbjct: 421 SSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGG 462
BLAST of CmaCh02G017280 vs. TAIR 10
Match:
AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 220.3 bits (560), Expect = 3.0e-57
Identity = 189/469 (40.30%), Postives = 249/469 (53.09%), Query Frame = 0
Query: 1 MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
M+SD GKLFIGGI+WDT EE LR YF+ +G+V++AVIMRD+ TGR RGFGF+VF+D V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
++V+ DKH IDGR VEAK+A+ R++QQ R S S G +TKKIFVGGLPS+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
+TE+ F+ YF+ +G + DVV+MYD NTQRPRGFGFITFD++DAVDRVL K+FHELNGKLV
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 181 EVKRALPKDANPGSGCRGGYQ---NYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGY 240
EVKRA+PK+ +P S R NYG G+N R N Y + GF Y+
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSN------RMPANSYFNNFAPGPGF--YNSL 240
Query: 241 GVSSYGYGGPNSGVPYGSYGSYGVGM-----------YGGASAGFGG---PAVPFGNPTA 300
G + P G + ++G+G+ G S+ FG P+ P+ N +
Sbjct: 241 GPVGRRF-SPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGAS 300
Query: 301 VNAGYLSGAHGAMKSSW-TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPS 360
N H +S + +N +G A PG W+ + + G S
Sbjct: 301 PNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPG------WNLNVSNGNNRGNWGLPSS 360
Query: 361 GASGYGNQGYYGGNDGPYGGYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGY---- 420
A N G +G N YGTS G ++S N GS GE + Y S +
Sbjct: 361 SAVSNDNNG-FGRN------YGTSSGLSSSPFNGFEGS--IGELYRGGSVYSDSTWQQQQ 420
Query: 421 ---------DDTNGNSGYSSGGWRSDAS-QTPGGYGGGY--GGTQSRHG 436
D+ + GY SD S P Y G Y G Q+ G
Sbjct: 421 LPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 445
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8W034 | 5.6e-109 | 55.60 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... | [more] |
Q98SJ2 | 6.5e-41 | 37.39 | DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1 | [more] |
P51989 | 5.5e-40 | 35.31 | Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis OX=8355 P... | [more] |
Q9JII5 | 2.1e-39 | 35.32 | DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2 | [more] |
Q96EP5 | 6.1e-39 | 35.56 | DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G14300.1 | 4.0e-110 | 55.60 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT2G33410.1 | 6.2e-103 | 52.71 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT3G07810.1 | 4.0e-62 | 42.95 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT3G07810.2 | 4.0e-62 | 42.95 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT5G55550.1 | 3.0e-57 | 40.30 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |