CmaCh02G017280 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G017280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionheterogeneous nuclear ribonucleoprotein 1-like
LocationCma_Chr02: 9715032 .. 9717458 (+)
RNA-Seq ExpressionCmaCh02G017280
SyntenyCmaCh02G017280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACCCCAATTTCCCTCCTCGTACTCGCGCGCTCATTCTCTTCCCTCCATTTCTCTCTCTCTTTATTTTTTCTCTCTCCCTTTTTTCGATCTCTAGGAGCTGAGTGTAACTCCAACTCATTGGCAAACACGAAGCAGCCCCAAATTCCGGTACCTTTTCAGTAATCAGAGACATGGACTCCGACGAGGGGAAGCTTTTCATCGGAGGAATAGCTTGGGACACTTCCGAGGAGACGCTCAGAGGCTATTTCGCCCAATTTGGCGAAGTTATCCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCTCGAGGCTTTGGGTTTGTCGTTTTCTCTGATTCTTCAGTTCTTGATCAGGTGCTTCAGGATAAGCACACAATCGATGGCCGCCAGGTTTTGCCTTCTTCTTCTGTAATTTATATCTGCATTACTTCGTTGCTTTATTAGGTTATGTTTTTTCTCGACGGTTTTTCTTTTTGTTGTTCTCATAATGGGGGTTTCGAGGAACATATTCTTGTGGGACTAGACCGTCAAATTGCTTTAATTTAGGAGCTCATTATTTACAGTGGCGCTGTAGTAAGACTCACTCTCAGTCTCTCACTTGTATTTCATCAGCTCATAATTGGTTTACTGTTATTGATCCTGGCATCAAAGTGGTCCTAAACAGTAAGAAACGGTCAGAATAGTTATTGTTTGGGTTATTTCGTCTCTATCCCCTCTTCCTCTCTCAACTGCAAGGGAAGTTGGGATTGTGTAATGTGGATCATTTTTTTTTTATGGGTAACCTTCTCAACTTTGTAGTTATCTCCGTCCATTTGTTTACGTGTTCTAAGGGTTCTAGACGGGCAGTTTCATGAGTACTTTTAGTAGCGGATTGAAAGGTTTATTCTATCGTTATCATTCGTTTGATACCGGAACACATAAACAGCATCCTGTCCGGCTGATATTGAACTCTCATGTGGTAATACCTCACCCTGTACTAGACATCGCCTTGTTTTTTAGACCAAAAGAGAGTGTACCACTACTTTGTAAGGGAACCTATATGCTTGAGAAGTTGATTAGCACATGCCTTCCTGGTAAGTAATATATTGTGGCATACCATTATGATTGTGTTGGCAGGTTTAAATTAACAAAAGTTCTGTTAGTCTGTTTGCATATGTCTGGGATACAAGGACAGTGAGGGAATCAAAATATATCAACTTGACCCATTGATTATTTTAAAATGCTTTTGAAAATCTTGCAACATATCATATGCTCATTATGATAACTGATAAATATGTATTTTATTTGCTTTCCCGTGAGTGTTTTCAGCAATTTCTAGTTGTGCTTTGTTGACACAGGTGGAGGCAAAAAGGGCTTTATCAAGAGAGGAACAGCAAACTTCCTCAAGAAGTGGGAGCTATAACTCCGGCAGAAGCTCTGGAGGTAGTGGATATTTTAAGACCAAAAAAATATTTGTTGGCGGTCTACCTTCGGCACTAACAGAAGATGGGTTCCGGCAGTATTTTGAAAATTATGGCCAAGTAACTGATGTAGTGATTATGTATGACCAAAATACTCAGAGACCTCGTGGATTTGGTTTCATAACATTTGACAATGAAGATGCAGTTGATAGAGTACTTTGTAAGAGCTTTCATGAACTGAATGGTAAACTTGTAGAGGTGAAACGGGCACTTCCTAAGGATGCAAATCCAGGAAGTGGTTGCCGTGGAGGCTATCAAAATTATGGTTCTGGCACTAACGCTAATAACTTTGATGGTAGATCAGATGGCAATAGATATATGCAAGCTCAGTCTACTGCTGGTGGTTTCCCACCATATTCTGGATATGGTGTTTCAAGTTATGGTTATGGAGGACCAAACAGTGGTGTTCCTTATGGAAGTTATGGTAGTTATGGTGTTGGTATGTATGGTGGCGCTAGTGCTGGATTTGGTGGTCCAGCTGTACCATTTGGAAATCCAACTGCAGTCAATGCTGGTTATCTAAGTGGAGCACATGGCGCGATGAAAAGTTCTTGGACCAACCAAGCTCCAGGATATGGTGGTCCTGGCTATGGTGCTAGTCCAGGCTTTGGGGCTGCAGCTCCTTGGAGTGCCTCAGGTACTGGTGTACCTCCTTCTGCCCCAAGGGGCCAATCTCCTAGTGGGGCTTCTGGATATGGGAATCAAGGTTATTATGGTGGAAACGATGGTCCTTATGGTGGCTATGGAACCTCTGGAGGACGAGCTACAAGTGCTCCAAATAGCAATGTTGGTAGCGGTCAAAGTGGAGAGCCACATGGCACGAGTGGTGGGTACATGGGGAGTGGATATGATGACACTAATGGAAATTCAGGTTACTCTAGTGGTGGCTGGAGATCCGATGCTTCACAGACTCCTGGTGGTTATGGTGGTGGTTATGGTGGCACTCAGTCTAGGCATGGTTAA

mRNA sequence

TAACCCCAATTTCCCTCCTCGTACTCGCGCGCTCATTCTCTTCCCTCCATTTCTCTCTCTCTTTATTTTTTCTCTCTCCCTTTTTTCGATCTCTAGGAGCTGAGTGTAACTCCAACTCATTGGCAAACACGAAGCAGCCCCAAATTCCGGTACCTTTTCAGTAATCAGAGACATGGACTCCGACGAGGGGAAGCTTTTCATCGGAGGAATAGCTTGGGACACTTCCGAGGAGACGCTCAGAGGCTATTTCGCCCAATTTGGCGAAGTTATCCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCTCGAGGCTTTGGGTTTGTCGTTTTCTCTGATTCTTCAGTTCTTGATCAGGTGCTTCAGGATAAGCACACAATCGATGGCCGCCAGGTGGAGGCAAAAAGGGCTTTATCAAGAGAGGAACAGCAAACTTCCTCAAGAAGTGGGAGCTATAACTCCGGCAGAAGCTCTGGAGGTAGTGGATATTTTAAGACCAAAAAAATATTTGTTGGCGGTCTACCTTCGGCACTAACAGAAGATGGGTTCCGGCAGTATTTTGAAAATTATGGCCAAGTAACTGATGTAGTGATTATGTATGACCAAAATACTCAGAGACCTCGTGGATTTGGTTTCATAACATTTGACAATGAAGATGCAGTTGATAGAGTACTTTGTAAGAGCTTTCATGAACTGAATGGTAAACTTGTAGAGGTGAAACGGGCACTTCCTAAGGATGCAAATCCAGGAAGTGGTTGCCGTGGAGGCTATCAAAATTATGGTTCTGGCACTAACGCTAATAACTTTGATGGTAGATCAGATGGCAATAGATATATGCAAGCTCAGTCTACTGCTGGTGGTTTCCCACCATATTCTGGATATGGTGTTTCAAGTTATGGTTATGGAGGACCAAACAGTGGTGTTCCTTATGGAAGTTATGGTAGTTATGGTGTTGGTATGTATGGTGGCGCTAGTGCTGGATTTGGTGGTCCAGCTGTACCATTTGGAAATCCAACTGCAGTCAATGCTGGTTATCTAAGTGGAGCACATGGCGCGATGAAAAGTTCTTGGACCAACCAAGCTCCAGGATATGGTGGTCCTGGCTATGGTGCTAGTCCAGGCTTTGGGGCTGCAGCTCCTTGGAGTGCCTCAGGTACTGGTGTACCTCCTTCTGCCCCAAGGGGCCAATCTCCTAGTGGGGCTTCTGGATATGGGAATCAAGGTTATTATGGTGGAAACGATGGTCCTTATGGTGGCTATGGAACCTCTGGAGGACGAGCTACAAGTGCTCCAAATAGCAATGTTGGTAGCGGTCAAAGTGGAGAGCCACATGGCACGAGTGGTGGGTACATGGGGAGTGGATATGATGACACTAATGGAAATTCAGGTTACTCTAGTGGTGGCTGGAGATCCGATGCTTCACAGACTCCTGGTGGTTATGGTGGTGGTTATGGTGGCACTCAGTCTAGGCATGGTTAA

Coding sequence (CDS)

ATGGACTCCGACGAGGGGAAGCTTTTCATCGGAGGAATAGCTTGGGACACTTCCGAGGAGACGCTCAGAGGCTATTTCGCCCAATTTGGCGAAGTTATCCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCTCGAGGCTTTGGGTTTGTCGTTTTCTCTGATTCTTCAGTTCTTGATCAGGTGCTTCAGGATAAGCACACAATCGATGGCCGCCAGGTGGAGGCAAAAAGGGCTTTATCAAGAGAGGAACAGCAAACTTCCTCAAGAAGTGGGAGCTATAACTCCGGCAGAAGCTCTGGAGGTAGTGGATATTTTAAGACCAAAAAAATATTTGTTGGCGGTCTACCTTCGGCACTAACAGAAGATGGGTTCCGGCAGTATTTTGAAAATTATGGCCAAGTAACTGATGTAGTGATTATGTATGACCAAAATACTCAGAGACCTCGTGGATTTGGTTTCATAACATTTGACAATGAAGATGCAGTTGATAGAGTACTTTGTAAGAGCTTTCATGAACTGAATGGTAAACTTGTAGAGGTGAAACGGGCACTTCCTAAGGATGCAAATCCAGGAAGTGGTTGCCGTGGAGGCTATCAAAATTATGGTTCTGGCACTAACGCTAATAACTTTGATGGTAGATCAGATGGCAATAGATATATGCAAGCTCAGTCTACTGCTGGTGGTTTCCCACCATATTCTGGATATGGTGTTTCAAGTTATGGTTATGGAGGACCAAACAGTGGTGTTCCTTATGGAAGTTATGGTAGTTATGGTGTTGGTATGTATGGTGGCGCTAGTGCTGGATTTGGTGGTCCAGCTGTACCATTTGGAAATCCAACTGCAGTCAATGCTGGTTATCTAAGTGGAGCACATGGCGCGATGAAAAGTTCTTGGACCAACCAAGCTCCAGGATATGGTGGTCCTGGCTATGGTGCTAGTCCAGGCTTTGGGGCTGCAGCTCCTTGGAGTGCCTCAGGTACTGGTGTACCTCCTTCTGCCCCAAGGGGCCAATCTCCTAGTGGGGCTTCTGGATATGGGAATCAAGGTTATTATGGTGGAAACGATGGTCCTTATGGTGGCTATGGAACCTCTGGAGGACGAGCTACAAGTGCTCCAAATAGCAATGTTGGTAGCGGTCAAAGTGGAGAGCCACATGGCACGAGTGGTGGGTACATGGGGAGTGGATATGATGACACTAATGGAAATTCAGGTTACTCTAGTGGTGGCTGGAGATCCGATGCTTCACAGACTCCTGGTGGTTATGGTGGTGGTTATGGTGGCACTCAGTCTAGGCATGGTTAA

Protein sequence

MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEVKRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSSYGYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVPFGNPTAVNAGYLSGAHGAMKSSWTNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGYGNQGYYGGNDGPYGGYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDDTNGNSGYSSGGWRSDASQTPGGYGGGYGGTQSRHG
Homology
BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 5.6e-109
Identity = 253/455 (55.60%), Postives = 300/455 (65.93%), Query Frame = 0

Query: 1   MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
           MDSD+GKLF+GGI+W+T E+ LR +F  +GEV QA++MRDK TGRPRGFGFV+FSD SVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
           D+VLQ+KH+ID R+V+ KRA+SREEQQ S R+G+ N+ RSSGG  Y KTKKIFVGGLP  
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120

Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
           LT++ FRQYFE YG VTDV IMYDQ T RPRGFGF++FD+EDAVD VL K+FH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180

Query: 181 EVKRALPKDANPGSGCR-------GGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPP 240
           EVKRALPKDANPG G R       GGYQ YG   N +++DGR D NR++Q QS   G P 
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGYQGYGG--NESSYDGRMDSNRFLQHQSVGNGLPS 240

Query: 241 Y--SGYGVSSYGYGGPNSGVPYGSYGSY--GVGMYG-GASAGFGGPAVPFGNPTAVNAGY 300
           Y  SGYG    GYG  ++G  YG+YG Y    G YG GA+AG+G   +P        AGY
Sbjct: 241 YGSSGYGA---GYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIP-------GAGY 300

Query: 301 LSGAHGAMKSSW-TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGY 360
            S    A ++SW T  + GYG PGYG+    GAA     SG GVP +AP  QSP   SGY
Sbjct: 301 GSSTGVAPRNSWDTPASSGYGNPGYGS----GAA----HSGYGVPGAAPPTQSP---SGY 360

Query: 361 GNQGY----YGGNDGPYG---GYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDD 420
            NQGY    Y G+D  YG    YG  GGR +   ++N G          SGGYMG GY D
Sbjct: 361 SNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNNPG----------SGGYMGGGYGD 410

Query: 421 TNGNSGYSSGGWRSDASQTPGGYGGGYGGTQSRHG 436
                    G WRSD SQ   GYGGGY   Q R G
Sbjct: 421 ---------GSWRSDPSQ---GYGGGYNDGQGRQG 410

BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match: Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.5e-41
Identity = 129/345 (37.39%), Postives = 176/345 (51.01%), Query Frame = 0

Query: 6   GKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQ 65
           GKLF+GG+ W T++ETLR YF+Q+GEV+  VIM+DKTT + RGFGFV F D + +  VL 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 66  DK-HTIDGRQVEAKRALSR--EEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALT 125
            + HT+DGR ++ K    R  + +++  R G       +  S   ++ KIFVGG+P    
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENS---RSNKIFVGGIPHNCG 129

Query: 126 EDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEV 185
           E   ++YF  +G VT+VV++YD   QRPRGFGFITF++E +VD+ +   FH++ GK VEV
Sbjct: 130 ETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 189

Query: 186 KRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGF---PPYSGYGV 245
           KRA P+D+   +    G   +GS                   QSTA G+   PP +  G 
Sbjct: 190 KRAEPRDSKSQTPGPPGSNQWGS----------------RAMQSTANGWTGQPPQTWQGY 249

Query: 246 SSYGYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVPFGNPTAVNAGYLSGAHGAMKSS 305
           S  G   P +G   G YG           AG GGP      P    A +L          
Sbjct: 250 SPQGMWMP-TGQTIGGYGQ---------PAGRGGPP-----PPPSFAPFLVSTTPGPFPP 309

Query: 306 WTNQAPGYGGP---GYGASPGFGAAAPWSASGTGVPPSAPRGQSP 342
                PGY  P   GYG  P       + +SG   PP  P G +P
Sbjct: 310 PQGFPPGYATPPPFGYGYGPPPPPPDQFVSSGVPPPPGTP-GAAP 319

BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match: P51989 (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis OX=8355 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.5e-40
Identity = 131/371 (35.31%), Postives = 182/371 (49.06%), Query Frame = 0

Query: 7   KLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQD 66
           KLFIGG++++T+EE+LR Y+ Q+G +   V+MRD  + R RGFGFV FS  + +D  +  
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69

Query: 67  K-HTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALTEDG 126
           + HTIDGR VE KRA++REE   S++ G+           +   KK+FVGG+     E  
Sbjct: 70  RPHTIDGRVVEPKRAVAREE---SAKPGA-----------HVTVKKLFVGGIKEDTEEHH 129

Query: 127 FRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEVKRA 186
            R+YFE YG++  + I+ D+ + + RGF F+TFD+ D VD+++ + +H +NG   EV++A
Sbjct: 130 LREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 189

Query: 187 LPK----DANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSS 246
           L K    D       RGG   +G      NF     GN    +    GG     GYG + 
Sbjct: 190 LSKQEMQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNFRGGSDGYGGG----RGYGDNG 249

Query: 247 Y-GYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVPFGNPTAVNAGYLSGAHGAMKSSW 306
           Y GYGG   G  YG   SYG    GG   G+GG A  +GN      GY  G         
Sbjct: 250 YNGYGGGQGGGNYGGGPSYG----GGRGGGYGGGA-GYGNQ---GGGYGGG--------- 309

Query: 307 TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPP---------SAPRGQSPSGASGYGNQG 363
                 YGG  YG    +     ++   +   P         +   G  P G   YG   
Sbjct: 310 ---YDNYGGGNYGGGGNYNDFGNYNQQSSNYGPMKSGGNFGGNRSMGGGPYGGGNYGPGN 342

BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match: Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 2.1e-39
Identity = 148/419 (35.32%), Postives = 197/419 (47.02%), Query Frame = 0

Query: 6   GKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQ 65
           GKLF+GG+ W T++ETLR YF+Q+GEV+  VIM+DKTT + RGFGFV F D + +  VL 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 66  DK-HTIDGRQVEAKRALSR--EEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALT 125
            + HT+DGR ++ K    R  + ++T  + G     RS       K+ KIFVGG+P    
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSS----KSNKIFVGGIPHNCG 129

Query: 126 EDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEV 185
           E   R+YF+ +G VT+VV++YD   QRPRGFGFITF++E +VD+ +   FH++ GK VEV
Sbjct: 130 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 189

Query: 186 KRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSSY 245
           KRA P+D+   +  + G   +GS    +             A   AG  PP         
Sbjct: 190 KRAEPRDSKNQAPGQPGASQWGSRVAPS------------AANGWAGQPPP-----TWQQ 249

Query: 246 GYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVP--------------FGNPTAVNAGY 305
           GYG     VP G      +G YG   AG G P  P              F  P     GY
Sbjct: 250 GYGPQGMWVPAGQ----AIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGY 309

Query: 306 LSGAHGAMKSSWTNQAP---GYGGPGYGASPGFGAAAP--------WSASGTGVPPSAPR 365
             GA       +    P    +  PG    P    AAP         +A     PP+A +
Sbjct: 310 --GAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTA-Q 369

Query: 366 GQSPSGASGYG------NQGYYGGNDGP--YGGYGTSGGRATSAPNSNVGSGQSGEPHG 389
              P G  GYG       QG+   +  P  YGG    G     A  S  G GQ+    G
Sbjct: 370 PDFPYGQYGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 400

BLAST of CmaCh02G017280 vs. ExPASy Swiss-Prot
Match: Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.1e-39
Identity = 149/419 (35.56%), Postives = 196/419 (46.78%), Query Frame = 0

Query: 6   GKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVLDQVLQ 65
           GKLF+GG+ W T++ETLR YF+Q+GEV+  VIM+DKTT + RGFGFV F D + +  VL 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 66  DK-HTIDGRQVEAKRALSR--EEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSALT 125
            + HT+DGR ++ K    R  + ++T  + G     RS       K+ KIFVGG+P    
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS----KSNKIFVGGIPHNCG 129

Query: 126 EDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLVEV 185
           E   R+YF+ +G VT+VV++YD   QRPRGFGFITF++E +VD+ +   FH++ GK VEV
Sbjct: 130 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 189

Query: 186 KRALPKDANPGSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGYGVSSY 245
           KRA P+D+   +  + G   +GS    N             A   AG  PP         
Sbjct: 190 KRAEPRDSKSQAPGQPGASQWGSRVVPN------------AANGWAGQPPP-----TWQQ 249

Query: 246 GYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPAVP--------------FGNPTAVNAGY 305
           GYG     VP G      +G YG   AG G P  P              F  P     GY
Sbjct: 250 GYGPQGMWVPAGQ----AIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGY 309

Query: 306 LSGAHGAMKSSWTNQAP---GYGGPGYGASPGFGAAAPWSASGTGVPPS--APRGQSPSG 365
             GA       +    P    +  PG    P    AAP +      PPS  AP    P  
Sbjct: 310 --GAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFP---PPPSQAAPDMSKPPT 369

Query: 366 ASGYGNQGYYGGNDGPYGGYGTSGGRATSAPNSNVG---SGQSGEPHGTSGGYMGSGYD 400
           A      G Y G      G+G      +  P S  G    G  G P G SG   G  ++
Sbjct: 370 AQPDFPYGQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHN 398

BLAST of CmaCh02G017280 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 396.0 bits (1016), Expect = 4.0e-110
Identity = 253/455 (55.60%), Postives = 300/455 (65.93%), Query Frame = 0

Query: 1   MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
           MDSD+GKLF+GGI+W+T E+ LR +F  +GEV QA++MRDK TGRPRGFGFV+FSD SVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
           D+VLQ+KH+ID R+V+ KRA+SREEQQ S R+G+ N+ RSSGG  Y KTKKIFVGGLP  
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120

Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
           LT++ FRQYFE YG VTDV IMYDQ T RPRGFGF++FD+EDAVD VL K+FH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180

Query: 181 EVKRALPKDANPGSGCR-------GGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFPP 240
           EVKRALPKDANPG G R       GGYQ YG   N +++DGR D NR++Q QS   G P 
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGYQGYGG--NESSYDGRMDSNRFLQHQSVGNGLPS 240

Query: 241 Y--SGYGVSSYGYGGPNSGVPYGSYGSY--GVGMYG-GASAGFGGPAVPFGNPTAVNAGY 300
           Y  SGYG    GYG  ++G  YG+YG Y    G YG GA+AG+G   +P        AGY
Sbjct: 241 YGSSGYGA---GYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIP-------GAGY 300

Query: 301 LSGAHGAMKSSW-TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGY 360
            S    A ++SW T  + GYG PGYG+    GAA     SG GVP +AP  QSP   SGY
Sbjct: 301 GSSTGVAPRNSWDTPASSGYGNPGYGS----GAA----HSGYGVPGAAPPTQSP---SGY 360

Query: 361 GNQGY----YGGNDGPYG---GYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDD 420
            NQGY    Y G+D  YG    YG  GGR +   ++N G          SGGYMG GY D
Sbjct: 361 SNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNNPG----------SGGYMGGGYGD 410

Query: 421 TNGNSGYSSGGWRSDASQTPGGYGGGYGGTQSRHG 436
                    G WRSD SQ   GYGGGY   Q R G
Sbjct: 421 ---------GSWRSDPSQ---GYGGGYNDGQGRQG 410

BLAST of CmaCh02G017280 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 372.1 bits (954), Expect = 6.2e-103
Identity = 233/442 (52.71%), Postives = 287/442 (64.93%), Query Frame = 0

Query: 1   MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
           M+SD+GKLFIGGI+WDT E  LR YF+ FGEV+Q  +MR+K TGRPRGFGFV FSD +V+
Sbjct: 1   MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60

Query: 61  DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
           D+VLQDKH ID R V+ KRA+SREEQ  + RSG++N+ R+       +TKKIFVGGLP A
Sbjct: 61  DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120

Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
           LT D FR YFE YG V+D VIM DQ TQRPRGFGF++FD+ED+VD VL K+FH+LNGK V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180

Query: 181 EVKRALPKDANP--------GSGCRGGYQNYGSGTNANNFDGRSDGNRYMQAQSTAGGFP 240
           EVKRALPKDANP        GSG  GG+  YG G+  + ++GR D NRYMQ Q+T  G+P
Sbjct: 181 EVKRALPKDANPGIASGGGRGSGGAGGFPGYG-GSGGSGYEGRVDSNRYMQPQNTGSGYP 240

Query: 241 PYSGYGVSSYGYGGPNSGVPYGSYGSYGVGMYGGASAGFGGPA-VPFGNPTAVNAGYLSG 300
           PY G G  + GYG  ++GV YG +G            G+G PA  P+GNP+   AG+ SG
Sbjct: 241 PYGGSGYGT-GYGYGSNGVGYGGFG------------GYGNPAGAPYGNPSVPGAGFGSG 300

Query: 301 AHGAMKSSWTNQAP-GYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPSGASGYGNQ 360
                +SSW  QAP GYG  GY      G AAPW   G+G P SA  GQ+ + A GYG+Q
Sbjct: 301 P----RSSWGAQAPSGYGNVGY------GNAAPW--GGSGGPGSAVMGQAGASA-GYGSQ 360

Query: 361 GY-YGGNDGPYG---GYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGYDDTNGNSG 420
           GY YGGND  YG    YG  GGR+ + PN++ G G +    G+       GY +  GN+G
Sbjct: 361 GYGYGGNDSSYGTPSAYGAVGGRSGNMPNNHGGGGYADALDGS------GGYGNHQGNNG 396

Query: 421 YSSGGWRSDASQTPGGYGGGYG 429
            +             GYGGGYG
Sbjct: 421 QA-------------GYGGGYG 396

BLAST of CmaCh02G017280 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.5 bits (602), Expect = 4.0e-62
Identity = 204/475 (42.95%), Postives = 262/475 (55.16%), Query Frame = 0

Query: 1   MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
           M SD GKLFIGGI+WDT+EE L+ YF+ FGEVI+AVI++D+TTGR RGFGFVVF+D +V 
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
           + V+ +KH IDGR VEAK+A+ R++Q   +RS S +   S GG G  +T+KIFVGGLPS+
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG--RTRKIFVGGLPSS 120

Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
           +TE  F+ YFE +G  TDVV+MYD NTQRPRGFGFIT+D+E+AV++VL K+FHELNGK+V
Sbjct: 121 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 180

Query: 181 EVKRALPKDANPG---SGCRGGYQNYGSGTNANNFDGRSDG--------------NRYMQ 240
           EVKRA+PK+ +PG   S    GY +YG     N  +G + G               R+  
Sbjct: 181 EVKRAVPKELSPGPSRSPLGAGY-SYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSP 240

Query: 241 AQSTAGGFPPY-SGYGVS-SYGYGGP---NSGVPYGSYGSYGVGM---YGGASAGFGGPA 300
             +   GF  Y SGYG++ ++  G P     G  Y     YG GM   Y G +  F GPA
Sbjct: 241 VGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRF-GPA 300

Query: 301 VPF-GNPTAVNAGYLSGAHGAMKSSWTNQAPGYGGPGY---GASPGFGAAAPWSASGTGV 360
           V + G     N+ + S      ++ W N     GG  Y     +         S+SG   
Sbjct: 301 VGYEGGNGGGNSSFFS---SVTRNLWGNN----GGLNYNNNNTNSNSNTYMGGSSSGNNT 360

Query: 361 PPSAPRGQSPS--GASGYGNQGY--------YGGNDGPYGGYGTSGGRATSAPNSN---V 420
             S P G S    GA G GN           YGGN     G GT GG A   P +N    
Sbjct: 361 -LSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT-GGYAARNPGANKAAP 420

Query: 421 GSGQSGEPHGTSGGYMGSGYDDTNGNSG-YSSGGWRSDASQTPG------GYGGG 427
            S  S      + GY  +G  +  GN   YS   WRS   +T G      G GGG
Sbjct: 421 SSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGG 462

BLAST of CmaCh02G017280 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.5 bits (602), Expect = 4.0e-62
Identity = 204/475 (42.95%), Postives = 262/475 (55.16%), Query Frame = 0

Query: 1   MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
           M SD GKLFIGGI+WDT+EE L+ YF+ FGEVI+AVI++D+TTGR RGFGFVVF+D +V 
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
           + V+ +KH IDGR VEAK+A+ R++Q   +RS S +   S GG G  +T+KIFVGGLPS+
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPG--RTRKIFVGGLPSS 120

Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
           +TE  F+ YFE +G  TDVV+MYD NTQRPRGFGFIT+D+E+AV++VL K+FHELNGK+V
Sbjct: 121 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 180

Query: 181 EVKRALPKDANPG---SGCRGGYQNYGSGTNANNFDGRSDG--------------NRYMQ 240
           EVKRA+PK+ +PG   S    GY +YG     N  +G + G               R+  
Sbjct: 181 EVKRAVPKELSPGPSRSPLGAGY-SYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSP 240

Query: 241 AQSTAGGFPPY-SGYGVS-SYGYGGP---NSGVPYGSYGSYGVGM---YGGASAGFGGPA 300
             +   GF  Y SGYG++ ++  G P     G  Y     YG GM   Y G +  F GPA
Sbjct: 241 VGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRF-GPA 300

Query: 301 VPF-GNPTAVNAGYLSGAHGAMKSSWTNQAPGYGGPGY---GASPGFGAAAPWSASGTGV 360
           V + G     N+ + S      ++ W N     GG  Y     +         S+SG   
Sbjct: 301 VGYEGGNGGGNSSFFS---SVTRNLWGNN----GGLNYNNNNTNSNSNTYMGGSSSGNNT 360

Query: 361 PPSAPRGQSPS--GASGYGNQGY--------YGGNDGPYGGYGTSGGRATSAPNSN---V 420
             S P G S    GA G GN           YGGN     G GT GG A   P +N    
Sbjct: 361 -LSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT-GGYAARNPGANKAAP 420

Query: 421 GSGQSGEPHGTSGGYMGSGYDDTNGNSG-YSSGGWRSDASQTPG------GYGGG 427
            S  S      + GY  +G  +  GN   YS   WRS   +T G      G GGG
Sbjct: 421 SSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGG 462

BLAST of CmaCh02G017280 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 220.3 bits (560), Expect = 3.0e-57
Identity = 189/469 (40.30%), Postives = 249/469 (53.09%), Query Frame = 0

Query: 1   MDSDEGKLFIGGIAWDTSEETLRGYFAQFGEVIQAVIMRDKTTGRPRGFGFVVFSDSSVL 60
           M+SD GKLFIGGI+WDT EE LR YF+ +G+V++AVIMRD+ TGR RGFGF+VF+D  V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61  DQVLQDKHTIDGRQVEAKRALSREEQQTSSRSGSYNSGRSSGGSGYFKTKKIFVGGLPSA 120
           ++V+ DKH IDGR VEAK+A+ R++QQ   R  S     S    G  +TKKIFVGGLPS+
Sbjct: 61  ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120

Query: 121 LTEDGFRQYFENYGQVTDVVIMYDQNTQRPRGFGFITFDNEDAVDRVLCKSFHELNGKLV 180
           +TE+ F+ YF+ +G + DVV+MYD NTQRPRGFGFITFD++DAVDRVL K+FHELNGKLV
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180

Query: 181 EVKRALPKDANPGSGCRGGYQ---NYGSGTNANNFDGRSDGNRYMQAQSTAGGFPPYSGY 240
           EVKRA+PK+ +P S  R       NYG G+N      R   N Y    +   GF  Y+  
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSN------RMPANSYFNNFAPGPGF--YNSL 240

Query: 241 GVSSYGYGGPNSGVPYGSYGSYGVGM-----------YGGASAGFGG---PAVPFGNPTA 300
           G     +  P  G    +  ++G+G+             G S+ FG    P+ P+ N  +
Sbjct: 241 GPVGRRF-SPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGAS 300

Query: 301 VNAGYLSGAHGAMKSSW-TNQAPGYGGPGYGASPGFGAAAPWSASGTGVPPSAPRGQSPS 360
            N       H   +S + +N    +G     A PG      W+ + +        G   S
Sbjct: 301 PNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPG------WNLNVSNGNNRGNWGLPSS 360

Query: 361 GASGYGNQGYYGGNDGPYGGYGTSGGRATSAPNSNVGSGQSGEPHGTSGGYMGSGY---- 420
            A    N G +G N      YGTS G ++S  N   GS   GE +     Y  S +    
Sbjct: 361 SAVSNDNNG-FGRN------YGTSSGLSSSPFNGFEGS--IGELYRGGSVYSDSTWQQQQ 420

Query: 421 ---------DDTNGNSGYSSGGWRSDAS-QTPGGYGGGY--GGTQSRHG 436
                    D+ +   GY      SD S   P  Y G Y  G  Q+  G
Sbjct: 421 LPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 445

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8W0345.6e-10955.60Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
Q98SJ26.5e-4137.39DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1[more]
P519895.5e-4035.31Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis OX=8355 P... [more]
Q9JII52.1e-3935.32DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2[more]
Q96EP56.1e-3935.56DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT4G14300.14.0e-11055.60RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G33410.16.2e-10352.71RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G07810.14.0e-6242.95RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G07810.24.0e-6242.95RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.13.0e-5740.30RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..78
e-value: 8.9E-22
score: 88.3
coord: 111..183
e-value: 5.6E-23
score: 92.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 8..75
e-value: 7.8E-15
score: 54.5
coord: 112..169
e-value: 4.6E-16
score: 58.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..82
score: 17.233515
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 110..187
score: 17.983952
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..108
e-value: 3.5E-25
score: 90.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 109..195
e-value: 8.2E-26
score: 92.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..349
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 368..416
NoneNo IPR availablePANTHERPTHR48035:SF1SUBFAMILY NOT NAMEDcoord: 1..434
NoneNo IPR availablePANTHERPTHR48035HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1coord: 1..434
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 8..78
e-value: 7.19712E-36
score: 125.006
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 108..187
e-value: 2.31761E-44
score: 147.512
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..106
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 109..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G017280.1CmaCh02G017280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding