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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCGTTACTTGAGGAGGGTCGTAGCCTCGCCGGCTATACACTCGATGACGTTTTGGCTAACAATAGATTTGGGCCGCCGGCCTCTGCAACTGCAAGGGCTGCCGAAATCCGAGGCCGAACCCTACTCGACGTGATCCGCGACGAGGAGCCAAGCGCCGCCAAGGGGCTTTTCGGAAAGGACAAAAGGACATGGAAGTCTTTTAGGGAGAAACTCCGATTGAAGCGCGCCGGTTCTGCTTGGGTCTCCACAGTTCCGATTCCAACCTCCGATATGCCTTTTCAGCCTAAGCGATCCCTAATGGGGAAGCGGAGTCAAGTCCGGTTCAACACGCCTTCGTCGCGAAACTCCACCGATCATTCCGCTCGTAATCCGTCTGAAGAATCCTCCAAATCCTTTCGCCGTCAAGTATCTCGACAGAGTTCCACAATGAACAGTTCCAGCGATTCGACTCCGTTCCAATACGACGAGTCCTTTGATTATTCATCCGTTCCGGATTCAGCGCCGAGTCGAATGAGACCGCAAATGTCGCGTCACAACTCAATCCGGATCCCAAATCCAACGGAGAACTACACCGATCCAACTGAATCAGATCGTGATAACCGAGTCCGACATATAAGCTCCGCCTTCTCGGAGCGGAGAATGATGTCCGCTAGAGAAACAGTAGCAGCACAAGAAGCAGCCGATGCAGCCGCCGCCGCCGCCGCAGCGGAAGCTGCAGAAGAAGAGAAAGAGAAAGAGAAAGAGAAAGAACAAATCGAAAACGAAGACGAAAATGAAAACGTAGAATCAACAACAGGATCGGAGGAATGGGAGAAGGTGTCACCTACGTCGGAGCCTGTTAGGATGTCGTTGATGGATCTGTTGCACGAGACTGACAGAGAAATGGGGTTCGAAGGGTCGAATTACGGAATGGGGTTCGAAGAAGATGGATTCTCCGATGAGGAAGACGTTGCATACGAAGAAGATGAAGACGATGGTAGTGGCGGAGAATTCAGCTGCTGCGTTTGCATGGTGAAGCATAAGAACGCGCCAATGGCGCCATGCGGCCATACATTTTGCAGGCTCTGTTCGAAGGAGCTTATGGTTAGCCGCGGGAACTGTCCCACTTGCAACGATTTCATCTTGGAAATGCTCGAGGCTTTTTAA mRNA sequence ATGTCGTTACTTGAGGAGGGTCGTAGCCTCGCCGGCTATACACTCGATGACGTTTTGGCTAACAATAGATTTGGGCCGCCGGCCTCTGCAACTGCAAGGGCTGCCGAAATCCGAGGCCGAACCCTACTCGACGTGATCCGCGACGAGGAGCCAAGCGCCGCCAAGGGGCTTTTCGGAAAGGACAAAAGGACATGGAAGTCTTTTAGGGAGAAACTCCGATTGAAGCGCGCCGGTTCTGCTTGGGTCTCCACAGTTCCGATTCCAACCTCCGATATGCCTTTTCAGCCTAAGCGATCCCTAATGGGGAAGCGGAGTCAAGTCCGGTTCAACACGCCTTCGTCGCGAAACTCCACCGATCATTCCGCTCGTAATCCGTCTGAAGAATCCTCCAAATCCTTTCGCCGTCAAGTATCTCGACAGAGTTCCACAATGAACAGTTCCAGCGATTCGACTCCGTTCCAATACGACGAGTCCTTTGATTATTCATCCGTTCCGGATTCAGCGCCGAGTCGAATGAGACCGCAAATGTCGCGTCACAACTCAATCCGGATCCCAAATCCAACGGAGAACTACACCGATCCAACTGAATCAGATCGTGATAACCGAGTCCGACATATAAGCTCCGCCTTCTCGGAGCGGAGAATGATGTCCGCTAGAGAAACAGTAGCAGCACAAGAAGCAGCCGATGCAGCCGCCGCCGCCGCCGCAGCGGAAGCTGCAGAAGAAGAGAAAGAGAAAGAGAAAGAGAAAGAACAAATCGAAAACGAAGACGAAAATGAAAACGTAGAATCAACAACAGGATCGGAGGAATGGGAGAAGGTGTCACCTACGTCGGAGCCTGTTAGGATGTCGTTGATGGATCTGTTGCACGAGACTGACAGAGAAATGGGGTTCGAAGGGTCGAATTACGGAATGGGGTTCGAAGAAGATGGATTCTCCGATGAGGAAGACGTTGCATACGAAGAAGATGAAGACGATGGTAGTGGCGGAGAATTCAGCTGCTGCGTTTGCATGGTGAAGCATAAGAACGCGCCAATGGCGCCATGCGGCCATACATTTTGCAGGCTCTGTTCGAAGGAGCTTATGGTTAGCCGCGGGAACTGTCCCACTTGCAACGATTTCATCTTGGAAATGCTCGAGGCTTTTTAA Coding sequence (CDS) ATGTCGTTACTTGAGGAGGGTCGTAGCCTCGCCGGCTATACACTCGATGACGTTTTGGCTAACAATAGATTTGGGCCGCCGGCCTCTGCAACTGCAAGGGCTGCCGAAATCCGAGGCCGAACCCTACTCGACGTGATCCGCGACGAGGAGCCAAGCGCCGCCAAGGGGCTTTTCGGAAAGGACAAAAGGACATGGAAGTCTTTTAGGGAGAAACTCCGATTGAAGCGCGCCGGTTCTGCTTGGGTCTCCACAGTTCCGATTCCAACCTCCGATATGCCTTTTCAGCCTAAGCGATCCCTAATGGGGAAGCGGAGTCAAGTCCGGTTCAACACGCCTTCGTCGCGAAACTCCACCGATCATTCCGCTCGTAATCCGTCTGAAGAATCCTCCAAATCCTTTCGCCGTCAAGTATCTCGACAGAGTTCCACAATGAACAGTTCCAGCGATTCGACTCCGTTCCAATACGACGAGTCCTTTGATTATTCATCCGTTCCGGATTCAGCGCCGAGTCGAATGAGACCGCAAATGTCGCGTCACAACTCAATCCGGATCCCAAATCCAACGGAGAACTACACCGATCCAACTGAATCAGATCGTGATAACCGAGTCCGACATATAAGCTCCGCCTTCTCGGAGCGGAGAATGATGTCCGCTAGAGAAACAGTAGCAGCACAAGAAGCAGCCGATGCAGCCGCCGCCGCCGCCGCAGCGGAAGCTGCAGAAGAAGAGAAAGAGAAAGAGAAAGAGAAAGAACAAATCGAAAACGAAGACGAAAATGAAAACGTAGAATCAACAACAGGATCGGAGGAATGGGAGAAGGTGTCACCTACGTCGGAGCCTGTTAGGATGTCGTTGATGGATCTGTTGCACGAGACTGACAGAGAAATGGGGTTCGAAGGGTCGAATTACGGAATGGGGTTCGAAGAAGATGGATTCTCCGATGAGGAAGACGTTGCATACGAAGAAGATGAAGACGATGGTAGTGGCGGAGAATTCAGCTGCTGCGTTTGCATGGTGAAGCATAAGAACGCGCCAATGGCGCCATGCGGCCATACATTTTGCAGGCTCTGTTCGAAGGAGCTTATGGTTAGCCGCGGGAACTGTCCCACTTGCAACGATTTCATCTTGGAAATGCTCGAGGCTTTTTAA Protein sequence MSLLEEGRSLAGYTLDDVLANNRFGPPASATARAAEIRGRTLLDVIRDEEPSAAKGLFGKDKRTWKSFREKLRLKRAGSAWVSTVPIPTSDMPFQPKRSLMGKRSQVRFNTPSSRNSTDHSARNPSEESSKSFRRQVSRQSSTMNSSSDSTPFQYDESFDYSSVPDSAPSRMRPQMSRHNSIRIPNPTENYTDPTESDRDNRVRHISSAFSERRMMSARETVAAQEAADAAAAAAAAEAAEEEKEKEKEKEQIENEDENENVESTTGSEEWEKVSPTSEPVRMSLMDLLHETDREMGFEGSNYGMGFEEDGFSDEEDVAYEEDEDDGSGGEFSCCVCMVKHKNAPMAPCGHTFCRLCSKELMVSRGNCPTCNDFILEMLEAF
Homology
BLAST of CmaCh02G016800 vs. TAIR 10
Match: AT3G07120.1 (RING/U-box superfamily protein ) HSP 1 Score: 211.8 bits (538), Expect = 9.4e-55 Identity = 169/395 (42.78%), Postives = 211/395 (53.42%), Query Frame = 0
Query: 2 SLLEEGRSLAGYTLDDVLANNRF-------GPPASATARAAEIR--GRTLLDVIRDEEPS 61
+L SLAG +LD VL PP + R +TL D+IR+E
Sbjct: 3 ALKSRSNSLAGLSLDAVLGGEILIEPPSLPSPPPLPSKSLVPHRPTSQTLFDIIREE--Y 62
Query: 62 AAKGLFGKDKRTWKSFREKLRLKRAGSAWVSTVPIPTSDMPF-QPKRSLMGKRSQVRFNT 121
A +G KD+ TW+ FREKLRLKR GSAW S++ IP SD+ PK RS
Sbjct: 63 AKEG--HKDRTTWQIFREKLRLKRTGSAWTSSLHIPASDILIPNPKHIGTAFRSH----- 122
Query: 122 PSSRNSTDHSARNPSEESSKSFRRQVSRQSSTMNSSSDSTPFQYDESFDYSSVPDSAPSR 181
+ N D P + S R + + S+M S P D+S D S + D PSR
Sbjct: 123 SAGLNIRDLVHAIPMSDPPGSSGRAMFTRGSSMRVGSSKNP---DDSPDISVLEDGPPSR 182
Query: 182 -MRPQMSRHNSIRIPNPTENYTDPTESDRDNRVRHISSAFSERRMMSARETVAAQEAADA 241
+PQ+SRH+S+R D +E + +NR RH F E R MSARE VAAQEAA+A
Sbjct: 183 SFKPQLSRHDSVR---------DHSEGEENNRRRHPIVTFVEERQMSAREAVAAQEAAEA 242
Query: 242 AAAAAAAEAAEEEKEKEKEKEQIENEDENENVESTTGSEEWEKVSPTSEPVR-MSLMDLL 301
AAAA E+ED+++ E +G E K S SEP + MSLMDLL
Sbjct: 243 EAAAAGGS---------------EDEDDDDE-EDDSGETEEMKSSSASEPKQTMSLMDLL 302
Query: 302 HETDREMGFEGSNYGMGFEEDGFSDEEDVAYEEDEDD--GSGGEFSCCVCMVKHKNAPMA 361
ETDR+MG GS Y M +E+ DEED EE+ D G GE SCCVCMVK K A
Sbjct: 303 EETDRQMGLTGSRYAMDEDEEYEEDEEDENNEEEGDSHGGGEGELSCCVCMVKIKGASFT 360
Query: 362 PCGHTFCRLCSKELMVSRGNCPTCNDFILEMLEAF 383
PCGHTFC+LCSKELM +G+CP C+ F+LE LE F
Sbjct: 363 PCGHTFCKLCSKELMAQKGHCPVCSSFVLEFLEIF 360
BLAST of CmaCh02G016800 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein ) HSP 1 Score: 102.4 bits (254), Expect = 8.0e-22 Identity = 112/384 (29.17%), Postives = 146/384 (38.02%), Query Frame = 0
Query: 1 MSLLEEGRSLAGYTLDDVLA--NNRFGPPASATARAAEIRGRTLLDVIRDEEPSAAKGLF 60
MS +E RS TL+ +L NR P + + R+L++V++ E +
Sbjct: 18 MSTVESSRSC--LTLEAILMADKNRTSPQILSPPPSRSQSNRSLVEVMQREHRHS----- 77
Query: 61 GKDKRTWKSFREKLRLKRAGSAWVSTVPIPTSDMPFQPKRSLMGKRSQVRFNTPSSRNST 120
+DK WKS REKLRLKR GS W+S+ IP+ D P P R
Sbjct: 78 -RDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPI-PNRD------------------- 137
Query: 121 DHSARNPSEESSKSFRRQVSRQSSTMNSSSDSTPFQYDESFDYSSVPDSAPSRMRPQMSR 180
VS Q + S+S
Sbjct: 138 -----------------NVSHQLGFLLSNSG----------------------------- 197
Query: 181 HNSIRIPNPTENYTDPTESDRDNRVRHISSAFSERRMMSARETVAAQEAADAAAAAAAAE 240
N TE S + R+R + + +E R +SAR
Sbjct: 198 -------NVTEE-----ASSVEGRIR-LGAVLAEERALSAR------------------- 250
Query: 241 AAEEEKEKEKEKEQIENEDENENVESTTGSEEWEKVSPTSEPVRMSLMDLLHETDREMGF 300
EEE E+E EP RMSLM+LL E + +M F
Sbjct: 258 --EEETPAERE----------------------------VEPARMSLMELLEENEGQMSF 250
Query: 301 EGSNYGMGFEEDGFSDEEDVAYEEDEDDGSGGEFSCCVCMVKHKNAPMAPCGHTFCRLCS 360
DG ++EE A + E SCCVCMV+ K A PCGHTFCRLCS
Sbjct: 318 --------VSVDGEAEEEVAAV-------TAAEISCCVCMVRSKGAAFIPCGHTFCRLCS 250
Query: 361 KELMVSRGNCPTCNDFILEMLEAF 383
+EL V RGNCP CN ILE+L+ F
Sbjct: 378 RELWVQRGNCPLCNTTILEVLDLF 250
BLAST of CmaCh02G016800 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein ) HSP 1 Score: 102.4 bits (254), Expect = 8.0e-22 Identity = 112/384 (29.17%), Postives = 146/384 (38.02%), Query Frame = 0
Query: 1 MSLLEEGRSLAGYTLDDVLA--NNRFGPPASATARAAEIRGRTLLDVIRDEEPSAAKGLF 60
MS +E RS TL+ +L NR P + + R+L++V++ E +
Sbjct: 18 MSTVESSRSC--LTLEAILMADKNRTSPQILSPPPSRSQSNRSLVEVMQREHRHS----- 77
Query: 61 GKDKRTWKSFREKLRLKRAGSAWVSTVPIPTSDMPFQPKRSLMGKRSQVRFNTPSSRNST 120
+DK WKS REKLRLKR GS W+S+ IP+ D P P R
Sbjct: 78 -RDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPI-PNRD------------------- 137
Query: 121 DHSARNPSEESSKSFRRQVSRQSSTMNSSSDSTPFQYDESFDYSSVPDSAPSRMRPQMSR 180
VS Q + S+S
Sbjct: 138 -----------------NVSHQLGFLLSNSG----------------------------- 197
Query: 181 HNSIRIPNPTENYTDPTESDRDNRVRHISSAFSERRMMSARETVAAQEAADAAAAAAAAE 240
N TE S + R+R + + +E R +SAR
Sbjct: 198 -------NVTEE-----ASSVEGRIR-LGAVLAEERALSAR------------------- 250
Query: 241 AAEEEKEKEKEKEQIENEDENENVESTTGSEEWEKVSPTSEPVRMSLMDLLHETDREMGF 300
EEE E+E EP RMSLM+LL E + +M F
Sbjct: 258 --EEETPAERE----------------------------VEPARMSLMELLEENEGQMSF 250
Query: 301 EGSNYGMGFEEDGFSDEEDVAYEEDEDDGSGGEFSCCVCMVKHKNAPMAPCGHTFCRLCS 360
DG ++EE A + E SCCVCMV+ K A PCGHTFCRLCS
Sbjct: 318 --------VSVDGEAEEEVAAV-------TAAEISCCVCMVRSKGAAFIPCGHTFCRLCS 250
Query: 361 KELMVSRGNCPTCNDFILEMLEAF 383
+EL V RGNCP CN ILE+L+ F
Sbjct: 378 RELWVQRGNCPLCNTTILEVLDLF 250
BLAST of CmaCh02G016800 vs. TAIR 10
Match: AT4G13100.1 (RING/U-box superfamily protein ) HSP 1 Score: 84.0 bits (206), Expect = 2.9e-16 Identity = 104/391 (26.60%), Postives = 136/391 (34.78%), Query Frame = 0
Query: 1 MSLLEEGRSLAGYTLDDVL--ANNRFGPPASATARAAEIRGRTLLDVIRDEEPSAAKGLF 60
MS +E GRS TL+D+L + F + T +LLDV+R E
Sbjct: 18 MSTVENGRS--SVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRER-------- 77
Query: 61 GKDKRTWKSFREKLRLKRAGSAWVSTVPIPTSDMPFQPKRSLMGKRSQVRFNTPSSRNST 120
+DK WKS R+KLRLKR + W+S+ PIPT D
Sbjct: 78 RRDKTAWKSLRDKLRLKRTATGWISSNPIPTLD--------------------------- 137
Query: 121 DHSARNPSEESSKSFRRQVSRQSSTMNSSSDSTPFQYDESFDYSSVPDSAPSRMRPQMSR 180
Sbjct: 138 ------------------------------------------------------------ 197
Query: 181 HNSIRIPNPTENYTDPTESDRDNRVRHISSAFSERRMMSARETVAAQEAADAAAAAAAAE 240
N I P+ +S R NR+ + + SE S + AA+EAA+
Sbjct: 198 -NHILTPD--------NDSHRFNRLGFLLTN-SETNRSSRDVSDAAEEAAEREGRLRLGT 257
Query: 241 AAEEEKEKEKEKEQIENEDENENVESTTGSEEWEKVSPTSEPVRMSLMDLLHETDREMGF 300
E+E+ +P RMSLM+LL + D M
Sbjct: 258 VLAAEREE-------------------------------MQPPRMSLMELLEDNDGHM-- 259
Query: 301 EGSNYGMGFEEDGFSDEEDVAYEEDEDDG-------SGGEFSCCVCMVKHKNAPMAPCGH 360
E DE +V + D G E CCVCMV+ K A PCGH
Sbjct: 318 ---------YELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGH 259
Query: 361 TFCRLCSKELMVSRGNCPTCNDFILEMLEAF 383
TFCRLCS+EL V RGNCP CN IL++L+ F
Sbjct: 378 TFCRLCSRELWVQRGNCPLCNTAILQVLDIF 259
BLAST of CmaCh02G016800 vs. TAIR 10
Match: AT4G13100.4 (RING/U-box superfamily protein ) HSP 1 Score: 84.0 bits (206), Expect = 2.9e-16 Identity = 104/391 (26.60%), Postives = 136/391 (34.78%), Query Frame = 0
Query: 1 MSLLEEGRSLAGYTLDDVL--ANNRFGPPASATARAAEIRGRTLLDVIRDEEPSAAKGLF 60
MS +E GRS TL+D+L + F + T +LLDV+R E
Sbjct: 15 MSTVENGRS--SVTLEDILMAETSSFRSLTTPTTPVRNHSSSSLLDVMRRER-------- 74
Query: 61 GKDKRTWKSFREKLRLKRAGSAWVSTVPIPTSDMPFQPKRSLMGKRSQVRFNTPSSRNST 120
+DK WKS R+KLRLKR + W+S+ PIPT D
Sbjct: 75 RRDKTAWKSLRDKLRLKRTATGWISSNPIPTLD--------------------------- 134
Query: 121 DHSARNPSEESSKSFRRQVSRQSSTMNSSSDSTPFQYDESFDYSSVPDSAPSRMRPQMSR 180
Sbjct: 135 ------------------------------------------------------------ 194
Query: 181 HNSIRIPNPTENYTDPTESDRDNRVRHISSAFSERRMMSARETVAAQEAADAAAAAAAAE 240
N I P+ +S R NR+ + + SE S + AA+EAA+
Sbjct: 195 -NHILTPD--------NDSHRFNRLGFLLTN-SETNRSSRDVSDAAEEAAEREGRLRLGT 254
Query: 241 AAEEEKEKEKEKEQIENEDENENVESTTGSEEWEKVSPTSEPVRMSLMDLLHETDREMGF 300
E+E+ +P RMSLM+LL + D M
Sbjct: 255 VLAAEREE-------------------------------MQPPRMSLMELLEDNDGHM-- 256
Query: 301 EGSNYGMGFEEDGFSDEEDVAYEEDEDDG-------SGGEFSCCVCMVKHKNAPMAPCGH 360
E DE +V + D G E CCVCMV+ K A PCGH
Sbjct: 315 ---------YELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGH 256
Query: 361 TFCRLCSKELMVSRGNCPTCNDFILEMLEAF 383
TFCRLCS+EL V RGNCP CN IL++L+ F
Sbjct: 375 TFCRLCSRELWVQRGNCPLCNTAILQVLDIF 256
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 223..263 |
| None | No IPR available | PFAM | PF13920 | zf-C3HC4_3 | coord: 333..375
e-value: 1.2E-8
score: 34.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 226..279 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 135..192 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 104..120 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 85..202 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 238..255 |
| None | No IPR available | PANTHER | PTHR46629 | OS01G0917900 PROTEIN | coord: 7..382 |
| None | No IPR available | PANTHER | PTHR46629:SF13 | OS01G0917900 PROTEIN | coord: 7..382 |
| None | No IPR available | CDD | cd16449 | RING-HC | coord: 334..371
e-value: 1.04501E-9
score: 51.3141 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 333..378 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 334..371
e-value: 6.7E-4
score: 29.0 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 334..372
score: 11.087743 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | coord: 310..382
e-value: 4.1E-11
score: 44.2 |
Relationships
The following mRNA feature(s) are a part of this gene:
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