CmaCh02G016740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G016740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	E3 ubiquitin-protein ligase RNF4-like
Location	Cma_Chr02: 9452722 .. 9456526 (-)
RNA-Seq Expression	CmaCh02G016740
Synteny	CmaCh02G016740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAAAACGGAGTTGGTGACGTAGGCACGTGCGAATCAAACTTACACGTGTAAACACAACGATTGGTCTTCAGAAGAAGACGTGGCGTGTTTCAGCCTCGGGGCTCTCTTTTGCAGAGTCAGTCCCTCAGTCTCGCAAGAACCCTGAAAGTTCCCCATTCTCCATTCCCCAATCCCCTTTATAACGGCTGTTTCGCTTTCCCTTTCTTTTTTCCTTCCATCTCTCAACCCTTAGAACCCTAAAACTGATCATCCACACCCAAACTCATCCATCTAATCTAATCTAGTTTATCTATCTACCGCCAACGGATTTCAATATATATCTTATAATCTCTCGCCTTATATCTTCATCAATCGCTTATTTGAGGTATATCATCTTGAAATTGGACGGATTTTGTTTTCTGGTATTTTACTTTATTGTGTTTTTTTTTATTTAATTTGTTTTTGTGAATGCTTTGATCCACGTGGGTTTGAAGACTTGATGATTTGGTTTGGGATCGTGTATGTTCGGAAAAACTATCTGGTGGAGTTTAGAAAGAGATTTTGACGATCGGTTATGAATTTTGTGGTTTATTATAAATCTTATGATTGATCCGAGGGCATGATGTATTTGAATCGGGGTGTTAGAATTATTAGGAGGTTTGCTGCCACATTAGAGAATGTTTGGTGTAAAGCGTTTTTGTTGATTGGTGAAGATTTTTTCGTTGTCTTGGTTTCTGAGTTACAATCTTACAAGGATTTGTTTCTTGTGTATTTTGCCCTCTGTGAATCTCCTGGTGGTTATTGCATGGGATTCACATCTATGGGCTGGTTGTTGGGAGTGAGTGTGATCAATAGTGATACCAAGTTTTTGATTGAATGATAACCGATGTTTTTTTGAGTGTTTTCTTGTCAATGATGGTGGGTGTTGTGGTATTGGCTTTGTTGGAAGCTATCAATTTCTATCTCAAAATTTCCTCTGTTCACTTTATCTGACATCGGTTGCGCTCTTATTAAGATTTTCAATATATTGAGGGCATGCATAGCAGGCTGTTGAGGAGCTCCAAGATTGATGAGTACTCAGGCAATGAGGGGGGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTCAACATCATGCCACCAACCGAGAACCGAGATCAAGGGGAGGCATCTCAATTGGCGTTTCAGGAAGCACAAGTTAATCAACAACAGTCCGTACAACCTGCAATGGTTGATGTTGAGGCCATTGATGATGATGTTATTGAATCATCCGCCACAGCATTTGCTGAAGTATGCTTCTTCTGGCTTCACTGTATTGCTTAATACTTGTGATGCTTCTATCCATATTATGTTATTGTTCCATTGATTGGCTCTGATTTGTATTTCATGAATTCGATTGATTATCTATCAGGCTAAAAATAAATCCAGACGGAATGCTAGGAAGATTATAGTTGATGTGGATGCAGGTATAGTTATTCAGCTGGTGGAGGACTATAGTTATTTTTTTTGCTCTACTTTTTCTCCTTTATTAATTGGTGAAGAAATCTGTCTATTTTAAAGTTTTCTCCCTTGCAATACAATTTTATTTATTTTCATTTTATTCTTTACTTAGTTTTTATAAATTCTCAAGGTATGTAGTGTGCTGCATGCTCATTATCAATATGAAAGGTAGCTTAGAAATTTGATGTATTAGAATATTGAACATTAGTATAATAATTAGGAAAGTAGTTCATTGGGATTGATGTTCTCAGAAGCAGCAATTAAAACAGCCTTTAGATTTTGTGATTCATATTCTCAAACATATCTGCAATACAATGATCTTAATTTAGACTATTTAAGGACTTAGACATCAGCATTAAATACTTAGGAGCAAGAATATGTGAGGGCACTAAAACCTGTTCATTATTGAGATTTCTTCTAAAAATTAGCATTGATCACTAGTTAGAGCCATCCGAGCACTGATTTTTGGAATACCTTGCACTCCTGGCTAGAGCATGCAATCAAGAGAAATGAATAAAAGAGAGATTTATAATCGATTCTCATTCATCCTTCCAAAATACACCATTATACCAAATTACCAATGCCCAGCTAATGATCATGATAGATTTTATTTTTAGCTGGTGATTTGTAACCACGGTCTACTATTGCTTGTCTTGATTTTCTATTAGTAAGCCACCATAATTCCGCCATTGCATACTCCTTTTGCTATGACATGACTTTATGCGGCATGACATCATTTTCAATACGTACCTTCATAGCAGTTTAGTTCATAAGCTGTTGTGACCTTTAGCTATCTTCTCTATTATTTGTATTTATGGTTGTATCATCTATGGACGGGTGTGTCCATCCAGATATCTTTTCAAGTCCCCCTCCACCCCCCCACACCACTTGTTGTGATGCTCATCCTCTAATTGTTGCAGAAGAGTGGAGCCAGGTGTCAAATAATAACCGCATCAAGCGTAAGAGAGACGTGTCAAATCAACAAGCTCTAAATTCTGTTTTATTGATCAATTTGGAAGGCAGCAATAGCTTTATGGTACTGGGACAATTTAATCTTTGTTGTTACTCATATTTTGTGCACTATCGCTCATCCTCTAATTGTTTGGCAGGGACTTTCTCATCCTTGTTCTTTAGGCTGTCCTATTTCTTTTGTTTATAATACAGCCTTCTTTTTCTTAAATCTTATAATAAAAATAATAATAATTTGAGTGTTGAAAATGGGATCATTTCTCTAGTTCTTAATCTTTAGCCAACTTGGGATTTCTGTCTCATTGGCAGAAAGAGAAGCCTGCTCCATCGAAGGAGCCCAAATTCAGTTGTCCAATATGCATGGGTCCGTTAGTAGAAGAAACGTCAACAAGGTGTGGTCATATTTTCTGCAAGTCATGTATCAGGGCTGCAATAGCCGTCCAGAGCAAATGCCCATCCTGTAGGAAGAGAGTAACTGCCAAAGAACTCATCAGAGTGTTCCTTCCTGGGACGAGGTTGGAGTGAGGCTTTTACATGTAAGTAGCTTAATTGGCTTGCTACTTTATGCTTTTGTTCTCATGGATCAAAAGGGTTGCATATGCCTTATTTTCAATTTGCATTTTGGTTATTGGCCTAGTCCGGAGATTTCTTTCATAAATAACCATGTTTCGTTGGTTAGGATTGAGATTCTTTTATTTGTATTATAACTTGTGGTCTAGGATTGTTGTAATGGGTTGTGTTTGATTAAAGAGACATTTGAATCAGCTGTATTTATGAAAAGTTTGAATATAGGGTACTTCAGAAAGGGAGGTATATTATGAAATAAATCCTTCGAGCTTAGTTTTTCTATGCTTTCTTTTGTTCTTTAGTTTTATTCTCCATGGAAATAAAAGCTCAATTTCAAATCCTTCATAATGATTGTTAAGAATCACCACGCTCTTAGGACAACATGATGAATTGGAAACATAATATCGATGGCCGAGTGCAATAATCTGATCTTTATGTTCTAAATTGGTCTTTTAGTATGGTAAATTACATCTTGCAGGTATTCTTTTTAATAACTTCGAAGGAAAATCGTCGAAAGTTTTCTTGTAAGTAAGAAAAACTAGCTTTTAGGTGGAAATCTCCAGTGCATTCTGCGGATGGCTGCTGTAGCTTGATGATCTCTGAGTTGCAATAGCAGGTAGCAGGAAATTTTGATTTCCATATTTTTTGGTCGATACTTTTGGTGGTTTTATGGAGTTGTAAACGAACCCGACACTGAAATACAATAGTATGCAATGAGATTACATAATTAAATCCAGAAAGTTGCTTTTATCATGGTCGACTTCAGGTTTAG

mRNA sequence

AGCAAAACGGAGTTGGTGACGTAGGCACGTGCGAATCAAACTTACACGTGTAAACACAACGATTGGTCTTCAGAAGAAGACGTGGCGTGTTTCAGCCTCGGGGCTCTCTTTTGCAGAGTCAGTCCCTCAGTCTCGCAAGAACCCTGAAAGTTCCCCATTCTCCATTCCCCAATCCCCTTTATAACGGCTGTTTCGCTTTCCCTTTCTTTTTTCCTTCCATCTCTCAACCCTTAGAACCCTAAAACTGATCATCCACACCCAAACTCATCCATCTAATCTAATCTAGTTTATCTATCTACCGCCAACGGATTTCAATATATATCTTATAATCTCTCGCCTTATATCTTCATCAATCGCTTATTTGAGATTTTCAATATATTGAGGGCATGCATAGCAGGCTGTTGAGGAGCTCCAAGATTGATGAGTACTCAGGCAATGAGGGGGGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTCAACATCATGCCACCAACCGAGAACCGAGATCAAGGGGAGGCATCTCAATTGGCGTTTCAGGAAGCACAAGTTAATCAACAACAGTCCGTACAACCTGCAATGGTTGATGTTGAGGCCATTGATGATGATGTTATTGAATCATCCGCCACAGCATTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGATTATAGTTGATGTGGATGCAGAAGAGTGGAGCCAGGTGTCAAATAATAACCGCATCAAGCGTAAGAGAGACGTGTCAAATCAACAAGCTCTAAATTCTGTTTTATTGATCAATTTGGAAGGCAGCAATAGCTTTATGAAAGAGAAGCCTGCTCCATCGAAGGAGCCCAAATTCAGTTGTCCAATATGCATGGGTCCGTTAGTAGAAGAAACGTCAACAAGGTGTGGTCATATTTTCTGCAAGTCATGTATCAGGGCTGCAATAGCCGTCCAGAGCAAATGCCCATCCTGTAGGAAGAGAGTAACTGCCAAAGAACTCATCAGAGTGTTCCTTCCTGGGACGAGGTTGGAGTGAGGCTTTTACATGTATTCTTTTTAATAACTTCGAAGGAAAATCGTCGAAAGTTTTCTTGTAAGTAAGAAAAACTAGCTTTTAGGTGGAAATCTCCAGTGCATTCTGCGGATGGCTGCTGTAGCTTGATGATCTCTGAGTTGCAATAGCAGGTAGCAGGAAATTTTGATTTCCATATTTTTTGGTCGATACTTTTGGTGGTTTTATGGAGTTGTAAACGAACCCGACACTGAAATACAATAGTATGCAATGAGATTACATAATTAAATCCAGAAAGTTGCTTTTATCATGGTCGACTTCAGGTTTAG

Coding sequence (CDS)

ATGAGTACTCAGGCAATGAGGGGGGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTCAACATCATGCCACCAACCGAGAACCGAGATCAAGGGGAGGCATCTCAATTGGCGTTTCAGGAAGCACAAGTTAATCAACAACAGTCCGTACAACCTGCAATGGTTGATGTTGAGGCCATTGATGATGATGTTATTGAATCATCCGCCACAGCATTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGATTATAGTTGATGTGGATGCAGAAGAGTGGAGCCAGGTGTCAAATAATAACCGCATCAAGCGTAAGAGAGACGTGTCAAATCAACAAGCTCTAAATTCTGTTTTATTGATCAATTTGGAAGGCAGCAATAGCTTTATGAAAGAGAAGCCTGCTCCATCGAAGGAGCCCAAATTCAGTTGTCCAATATGCATGGGTCCGTTAGTAGAAGAAACGTCAACAAGGTGTGGTCATATTTTCTGCAAGTCATGTATCAGGGCTGCAATAGCCGTCCAGAGCAAATGCCCATCCTGTAGGAAGAGAGTAACTGCCAAAGAACTCATCAGAGTGTTCCTTCCTGGGACGAGGTTGGAGTGA

Protein sequence

MSTQAMRGGHTARGYHRRKSLDLDLNIMPPTENRDQGEASQLAFQEAQVNQQQSVQPAMVDVEAIDDDVIESSATAFAEAKNKSRRNARKIIVDVDAEEWSQVSNNNRIKRKRDVSNQQALNSVLLINLEGSNSFMKEKPAPSKEPKFSCPICMGPLVEETSTRCGHIFCKSCIRAAIAVQSKCPSCRKRVTAKELIRVFLPGTRLE

Homology

[Close]

BLAST of CmaCh02G016740 vs. ExPASy Swiss-Prot
Match: Q9CQ29 (RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 147 KFSCPICMGPLVEETSTRCGHIFCKSCIRAAIAVQSKCPSCRKRVTAKELIRV 200
           KF C +C G L   T   C HIFCK CI   +A Q+ CP CRK VT ++++ V
Sbjct: 17  KFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69

[Close]

BLAST of CmaCh02G016740 vs. ExPASy Swiss-Prot
Match: Q9QZS2 (E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.5e-07
Identity = 44/156 (28.21%), Postives = 70/156 (44.87%), Query Frame = 0


Query: 53  QSVQPAMVDVEAIDDDVIESSATAFAEAKNKSRRNARKIIVDVDAEEWSQVSNNNRIKRK 112
           +S++P +VD+   D  VI        E + + RRN R++  D  A+     S++  + R 
Sbjct: 56  ESLEPVVVDLTHNDSVVI-------VEERRRPRRNGRRLRQD-HADSCVVSSDDEELSRD 115

Query: 113 RDVSNQQALNSVLLINLEGSNSFMKEKPAPSKEPKFSCPICMGPLVE-------ETSTRC 172
           +DV        V       +       P PS     SCPICM    E         ST C
Sbjct: 116 KDV-------YVTTHTPRSTKDDGATGPRPS--GTVSCPICMDGYSEIVQNGRLIVSTEC 175

Query: 173 GHIFCKSCIRAAIAVQSKCPSCRKRVTAKELIRVFL 202
           GH+FC  C+R ++   + CP+CRK++  K    +++
Sbjct: 176 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]

BLAST of CmaCh02G016740 vs. ExPASy Swiss-Prot
Match: P78317 (E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens OX=9606 GN=RNF4 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 44/160 (27.50%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 53  QSVQPAMVDVEAIDDDVIESSATAFAEAKNKSRRNARKIIVDVDAEEWSQVSNNNRIKRK 112
           +S++P +VD+   D  VI        + + + RRNAR++  D  A+     S++  + R 
Sbjct: 52  ESLEPVVVDLTHNDSVVI-------VDERRRPRRNARRLPQD-HADSCVVSSDDEELSRD 111

Query: 113 RD--VSNQQALNSVLLINLEGSNSFMKEKPAPSKEPK--FSCPICMGPLVE-------ET 172
           RD  V+     N+             +++ A    P    SCPICM    E         
Sbjct: 112 RDVYVTTHTPRNA-------------RDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIV 171

Query: 173 STRCGHIFCKSCIRAAIAVQSKCPSCRKRVTAKELIRVFL 202
           ST CGH+FC  C+R ++   + CP+CRK++  K    +++
Sbjct: 172 STECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190

[Close]

BLAST of CmaCh02G016740 vs. ExPASy Swiss-Prot
Match: O88846 (E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus OX=10116 GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-06
Identity = 42/156 (26.92%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 53  QSVQPAMVDVEAIDDDVIESSATAFAEAKNKSRRNARKIIVDVDAEEWSQVSNNNRIKRK 112
           +S++P +VD+   D  VI        E + + RRN R++  D  A+     S++  + + 
Sbjct: 56  ESLEPVVVDLTHNDSVVI-------VEERRRPRRNGRRLRQD-HADSCVVSSDDEELSKD 115

Query: 113 RDVSNQQALNSVLLINLEGSNSFMKEKPAPSKEPKFSCPICMGPLVE-------ETSTRC 172
           +DV      ++      EG+      +P+ +     SCPICM    E         ST C
Sbjct: 116 KDV--YVTTHTPRSTKDEGTTGL---RPSGT----VSCPICMDGYSEIVQNGRLIVSTEC 175

Query: 173 GHIFCKSCIRAAIAVQSKCPSCRKRVTAKELIRVFL 202
           GH+FC  C+R ++   + CP+CRK++  K    +++
Sbjct: 176 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]

BLAST of CmaCh02G016740 vs. ExPASy Swiss-Prot
Match: Q32NQ8 (RING finger protein 10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05
Identity = 26/62 (41.94%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 149 SCPICMGPLVEETSTRCGHIFCKSCIRAAIAVQ----SKCPSCRKRVTAKELIRVFLPGT 207
           SCPIC+ P V    TRCGHIFC  CI   +++     S+CP C   +  K+L  V    T
Sbjct: 205 SCPICLYPPVAAKITRCGHIFCWPCILHYLSLSEKDWSRCPICYSSIIKKDLKSVVATET 264

[Close]

BLAST of CmaCh02G016740 vs. TAIR 10
Match: AT5G48655.2 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 96/211 (45.50%), Postives = 134/211 (63.51%), Query Frame = 0


Query: 1   MSTQAMRGGHTARGYHRRKSLDLDLNIMPPTENRDQGEASQLAFQEAQVNQQQSVQPAMV 60
           M+T  +R     RG  RRK++ +DLN +P  +   +G ++ +      +   Q   P M+
Sbjct: 1   MNTSEVR---VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMI 60

Query: 61  DVEAIDDDVIESSATAFAEAKNKSRRNARK-IIVDVDAEEWSQVSNNNRIKRKRDVSNQQ 120
           DV+AI+DDVIESSA+AFAEAK+KSR   R+ ++VDV++   ++   N   KR+R  S++ 
Sbjct: 61  DVDAIEDDVIESSASAFAEAKSKSRNARRRPLMVDVESGGTTRFPANISNKRRRIPSSES 120

Query: 121 ALNSVLL-----INLEGSNSFMKEKPAPSKEPKFSCPICMGPLVEETSTRCGHIFCKSCI 180
            ++         +N+    S  K    P +EPKF+CPICM P  EE ST+CGHIFCK CI
Sbjct: 121 VIDCEHASVNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCI 180

Query: 181 RAAIAVQSKCPSCRKRVTAKELIRVFLPGTR 206
           + AI+ Q KCP+CRK+VTAKELIRVFLP TR
Sbjct: 181 KMAISRQGKCPTCRKKVTAKELIRVFLPTTR 203

[Close]

BLAST of CmaCh02G016740 vs. TAIR 10
Match: AT5G48655.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 96/211 (45.50%), Postives = 134/211 (63.51%), Query Frame = 0


Query: 1   MSTQAMRGGHTARGYHRRKSLDLDLNIMPPTENRDQGEASQLAFQEAQVNQQQSVQPAMV 60
           M+T  +R     RG  RRK++ +DLN +P  +   +G ++ +      +   Q   P M+
Sbjct: 1   MNTSEVR---VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMI 60

Query: 61  DVEAIDDDVIESSATAFAEAKNKSRRNARK-IIVDVDAEEWSQVSNNNRIKRKRDVSNQQ 120
           DV+AI+DDVIESSA+AFAEAK+KSR   R+ ++VDV++   ++   N   KR+R  S++ 
Sbjct: 61  DVDAIEDDVIESSASAFAEAKSKSRNARRRPLMVDVESGGTTRFPANISNKRRRIPSSES 120

Query: 121 ALNSVLL-----INLEGSNSFMKEKPAPSKEPKFSCPICMGPLVEETSTRCGHIFCKSCI 180
            ++         +N+    S  K    P +EPKF+CPICM P  EE ST+CGHIFCK CI
Sbjct: 121 VIDCEHASVNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCI 180

Query: 181 RAAIAVQSKCPSCRKRVTAKELIRVFLPGTR 206
           + AI+ Q KCP+CRK+VTAKELIRVFLP TR
Sbjct: 181 KMAISRQGKCPTCRKKVTAKELIRVFLPTTR 203

[Close]

BLAST of CmaCh02G016740 vs. TAIR 10
Match: AT5G48655.3 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 96/211 (45.50%), Postives = 134/211 (63.51%), Query Frame = 0


Query: 1   MSTQAMRGGHTARGYHRRKSLDLDLNIMPPTENRDQGEASQLAFQEAQVNQQQSVQPAMV 60
           M+T  +R     RG  RRK++ +DLN +P  +   +G ++ +      +   Q   P M+
Sbjct: 1   MNTSEVR---VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMI 60

Query: 61  DVEAIDDDVIESSATAFAEAKNKSRRNARK-IIVDVDAEEWSQVSNNNRIKRKRDVSNQQ 120
           DV+AI+DDVIESSA+AFAEAK+KSR   R+ ++VDV++   ++   N   KR+R  S++ 
Sbjct: 61  DVDAIEDDVIESSASAFAEAKSKSRNARRRPLMVDVESGGTTRFPANISNKRRRIPSSES 120

Query: 121 ALNSVLL-----INLEGSNSFMKEKPAPSKEPKFSCPICMGPLVEETSTRCGHIFCKSCI 180
            ++         +N+    S  K    P +EPKF+CPICM P  EE ST+CGHIFCK CI
Sbjct: 121 VIDCEHASVNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCI 180

Query: 181 RAAIAVQSKCPSCRKRVTAKELIRVFLPGTR 206
           + AI+ Q KCP+CRK+VTAKELIRVFLP TR
Sbjct: 181 KMAISRQGKCPTCRKKVTAKELIRVFLPTTR 203

[Close]

BLAST of CmaCh02G016740 vs. TAIR 10
Match: AT3G07200.1 (RING/U-box superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-31
Identity = 85/177 (48.02%), Postives = 115/177 (64.97%), Query Frame = 0


Query: 31  TENRDQGEASQLAFQEAQVNQQQSVQPAMVDVEAI--DDDVIESSATAFAEAKNKSRRNA 90
           T+N  QG+  Q    +A    Q    P  ++V AI  DDDV+ES+A+AFA+AKNKS R+A
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKS-RSA 78

Query: 91  RKIIVDVDAEEWSQVSNNNRIKRKRDVSNQQALNSVLLINLEGSNSFMKEKPAPSKEPKF 150
           R+    VD E     +  NR  R+R  S+Q +++SV L     S    K    P +EPKF
Sbjct: 79  RRGSQVVDVES----AGANRSTRRR--SDQTSVDSVELNKPRKS----KAVAPPVEEPKF 138

Query: 151 SCPICMGPLVEETSTRCGHIFCKSCIRAAIAVQSKCPSCRKRVTAKELIRVFLPGTR 206
           SCPIC+ P  +E ST+CGHIFCK CI+ A+++Q+KCP+CRK++T K+LIRVFLP TR
Sbjct: 139 SCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTTR 182

[Close]

BLAST of CmaCh02G016740 vs. TAIR 10
Match: AT3G07200.2 (RING/U-box superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-31
Identity = 85/177 (48.02%), Postives = 115/177 (64.97%), Query Frame = 0


Query: 31  TENRDQGEASQLAFQEAQVNQQQSVQPAMVDVEAI--DDDVIESSATAFAEAKNKSRRNA 90
           T+N  QG+  Q    +A    Q    P  ++V AI  DDDV+ES+A+AFA+AKNKS R+A
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKS-RSA 78

Query: 91  RKIIVDVDAEEWSQVSNNNRIKRKRDVSNQQALNSVLLINLEGSNSFMKEKPAPSKEPKF 150
           R+    VD E     +  NR  R+R  S+Q +++SV L     S    K    P +EPKF
Sbjct: 79  RRGSQVVDVES----AGANRSTRRR--SDQTSVDSVELNKPRKS----KAVAPPVEEPKF 138

Query: 151 SCPICMGPLVEETSTRCGHIFCKSCIRAAIAVQSKCPSCRKRVTAKELIRVFLPGTR 206
           SCPIC+ P  +E ST+CGHIFCK CI+ A+++Q+KCP+CRK++T K+LIRVFLP TR
Sbjct: 139 SCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTTR 182

The following BLAST results are available for this feature:

BLAST of CmaCh02G016740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQ29	1.3e-07	47.17	RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1	[more]
Q9QZS2	8.5e-07	28.21	E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1	[more]
P78317	1.9e-06	27.50	E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens OX=9606 GN=RNF4 PE=1 SV=1	[more]
O88846	4.2e-06	26.92	E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus OX=10116 GN=Rnf4 PE=1 SV=1	[more]
Q32NQ8	2.7e-05	41.94	RING finger protein 10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1	[more]

BLAST of CmaCh02G016740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48655.2	1.1e-38	45.50	RING/U-box superfamily protein	[more]
AT5G48655.1	1.1e-38	45.50	RING/U-box superfamily protein	[more]
AT5G48655.3	1.1e-38	45.50	RING/U-box superfamily protein	[more]
AT3G07200.1	1.8e-31	48.02	RING/U-box superfamily protein	[more]
AT3G07200.2	1.8e-31	48.02	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 150..187 e-value: 2.1E-4 score: 30.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 149..188 e-value: 1.6E-9 score: 38.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 150..188 score: 12.459772
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 129..203 e-value: 1.3E-17 score: 65.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR47094	ELFLESS, ISOFORM B	coord: 8..204
None	No IPR available	PANTHER	PTHR47094:SF1	RING ZINC FINGER-RELATED	coord: 8..204
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 149..194
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 165..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G016740.1	CmaCh02G016740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding