CmaCh02G016710 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G016710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ethylene-responsive transcription factor-like protein isoform X2
Location	Cma_Chr02: 9443279 .. 9447313 (+)
RNA-Seq Expression	CmaCh02G016710
Synteny	CmaCh02G016710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAGTCACGTTCTCTCTCTCATTAGTATTTCTCTCTCTAAAACCAAATTTATTCTCTCTGCCTCCATTGCAGACCACCACCTGGTTATGGTCATCAGTCCAAACGGAACAAATTTACAAAACGAGGGATTTCAAAAAGGTGGTAGAGAAACAGATGATGCATGAGTTCAGAATTTGCGTATAATCCTTTCTCCTCGTAATCTCAACCCGCTTTTGTTTTTCGATCGTTTTTCTACGCCTCCGCCGCTGTGACCTCAGGTATGAACGGCGGCTCTCTGTTTTTTGGTCGGTTTTGTTTGGTCTCCGGTCGTCGACATTCGGCGTTGACGGGCGGAATCCGAATGCCGATCACTTGTTTGTTTGTTTGTTTTGGATTTTTGGTTTCTGAGTTAGCGTCTGTTTAGTGCTGCGTTTGTTTAGATTGGCGTTTTGAGGAATTTGGTATCTGAATTTCTTGTCGGCGGCTAGGTTGACTTGTAGCGATGGGTTTGTGAATTTCCACCACCGAATTTGATAGGTTTAGATTCTGAGTTGAAGTTTTAAGTTTAAACAAGTTGAGCTACGTTGGATTTGAATAGATTGGGAAGTTTGCTAATGGATTTCACCAAATTTGTTTGGTTTTTTGCTCAATTCAAGGTTCTTTTGGCTGATAGCTACTAGTTTTGTACTGCAATTTACTGCTTTTTGGATGGTGATAGTTTATGTTGGCACTGCTTTTAGATTATTGATTCATAGAATGATACTTGAATTTTGCTGTAGTACCTCATGTTGTGCATTTTGACTTCGTTTAGATTGCTTCAGTTGAGAGAAAGTGAAGTTAAACACTGTTTTTAGGTACAAAACAAGAATATACTTCACTAAGATGTTTTCTTCTTCTTCCTCTTTGATTTGTATTTGATAATATAAGATCACACCCATATTGGTTGGAGAGGGGAACGAAATGTTCCTTGTAAGGGTGTGAAAACATCTCTGTAGCAGACGCGTTTTAAAACCATGAGGCTGATAGTGATACGTAATGGGTTAAAGCGGTGGGCTTGGACTGTTATAAATGGTATCAAAGCCAGACACCGAGCGGAGTGCCAACGAGAGCGCTGGCCCCCAAGGAGGGTGAATTGTGAGATCTCACATTGGTGGGAGAGGGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCTTAGCAACACGTTTTACAACCGTGAGGTTGACGGTGATATATAAGGGGCCAAAGTGGTGAGCTTGGGCTATTACAAATGGTATTAAAGCCGGACACTGAGCGGTGTGCTAGCGAGGACGCTGGCCCCTAAGGAGAGTGGATTGTGAGATCTCATATTGGTTGGAGAGTGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAACGCGTTTTAAAACCGTGAGGCTGACAACAATACGTAAGGAGCTAAAGCTGTGAGCTTGGGCTATTACAAATGGTAGCAAAGCTGGACACCGAGCGGTGTGCCAGTGAGGACGCTGGCCCCCAAGGAGGGTCGATTGTAAGATTCTATATCGGTTGGAGATGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCATTTTAAAACCGTGAGGCTGACGGCGATATGTAACGGGCTAAAGCGGTGGGCTTGAGATATTACAAATGGTATCAAAGCCTGACACCGTGTGGTGTGCCAGCAAGGATGCTAGGCCCCAAGAAGGGTGGATTGTGAGATCCTACATCGGTTGGAGAAACGAACGAAATATTCTGTATGAGAGTGTGGAAACCTCTCCTTAGTAGACGCGCTTTAAAACCATGAGACTGACAGCGATACGTAATGGACTAAAGCAGACAATATCTGCTAGCGGTGGGCTTGGACCGTTACATATGTTCATCCATTTGGTTTGAGTGTTCTTAAATGTATGAATCAACGTGAAAACAAGTCTTCCTTATTGATTGTTCTCAGCAACTTGCATTCTTTATCCCCATTATGATAGATGCCACAATTCTGTTCTTTGAGCCTTATTGATCAGTTTGTTGTTTGTCTGTCGGTCCCAGTGTTTTGGAGATGTCTTTTTTCTTCTCATGGAACCTGATTGAGTTTGTTCTACTTCTCTGCTCTAGATGTGAGGTGATCCAGGAGAAACAACCAAATAGTACCAGCGATAACGCTATCAAAGCTAATTATGGTGAGCTTAAGAAGGCGTAAACTCCTCGGACTTTGCACTGGTAATGTCTTGAAGCTATGGCATTGAGAAAATGCCATTTCTATTCATTTGATTCATAACAGAACCACAGAAGGCTTCTTATACTCATTTTGTAGGCAAAGGCTCATTTGATGCTCCAGTTTCAAAGTTTTCTGAAAATTCAGATCTCGAGCACTGTTCGAACTTCATTAGTGTTCATCCCATCTTTTCGAACGAATTCAACGAGATAGAGAAGGTCAGTATTATTATGATTTCCAGTTTCTTCAATCACTGCATAATCACATCATGTTTATGTCTTGTAGTGCATAACGAGTACATTTATGCTCGATACTCATCTTGATAATATGGTATTTTTCAGATTCCCGCTGCAAATTTAGAGACTGAACCATTGAGGGTATCAGTTTTTGACACATCAAAGGAGAAAAGTGATGAGCCATTTGAAGGTGTGTTTGGTTTCATTTTTCACTGAGTTTTGAAGAGATATCTTTCTGTTCATATGCTTTTTATTTGCAGAACCGCCCGTAAAACATAGAAAACAACACCGGAGAAAGCATTTTCCAGAAGAATGTTTCTTAATGAGAGGTGTTTATTTCAAGAACATGAAATGGCAGGCTGCTATTAAGGTTGACAAGAAACAAATACACTTGGGAACTGTTGGATCACAAGAAGAAGCTGCTCATTTGTATGACAGGTACCATTTTGAAGTGCTAAAGTTCTAGCTGATTGATGAATATATTAATGGCATTTTGTCCCTAAGATATGTAACCACCGAGTCCATTGCTGAGTCTTTTTTGGGTTTTCCCTTTTGAGCTTTCTTTCAAGGTTTTAAAACGTGTCTATTAGGTCGAGGGTTCATTCCCCTCACCAATCGAGGTAGGGTCTCACAATCCACCCTCCTTGGGAGCCCAACATCCTCGCTGACACTCCGCCTGGAACTTAGCTCTAATACAATTTGTAATCGCCCTAACCCACCACTAGTAGTTATGGTTTTCTTTGACTTTTCCCTTTTGGACTTTCCCCCAAAATCTTAAAACGCTTCTATTAGAGAGAGATTTCTACGCCTCCGTTCCCCTCTTCACCGATATAAGATCTCACACGATAACTAGAAAATAGGTGCATTTTAACATTTTAATGCTTACAAACCATTTTGTGCATATTATTCCTTCACTTTTCAAAAAAAGAGAAGAAAAGAATACAGCCAAGGAGCTGATCATCTGTCTTTTGCTATTCTAGAGCTGCTTTCATGTGTGGAAGGGAACCCAACTTCGAGCTCCCAGAGGCGGAGAAGAAAGAACTGAGAAAGTTTAATTGGGATGAGTTTTTAGCAATGACTCGACTCGCAATCGCTAATAAAAGTAAGTCTCTGTTTTCTTCAATTTGGTTAATGTTCATATGAAGATGATCTGAGTTATTTATCATCATATTCGCCAGAACAAAAGAGGGTCAGCCCAGAATCAAAGAACTCTAAACTTCCTATTCTGGGGAGCGACGACTTGAACAAGAGACAGGATGAGTTCAGTGACCTCTCAGCTCCAGAAGATATTGAACCACTTGCCTTGAAATTTTGATGGAGATATGCAGTTTTGATTTCTTTTATTAAAAGGCCATTGAAATTTTGGATCATTGGATGTACATCAGTTTAGTGATTTAGGCAAATCCTTCGGGCATTTCATGAACAATGATCTTGCAACAATTTAGACATGAACAAGTCAGGAATTTAGTACATTCAGGTGAAAATCTACTTTAGATTCATAGTAAATCATTTACATGTATTGAGTTCAGCAAATCGCTACTAGTTTGAACACAGAACAGGAACGAC

mRNA sequence

TAGAAGTCACGTTCTCTCTCTCATTAGTATTTCTCTCTCTAAAACCAAATTTATTCTCTCTGCCTCCATTGCAGACCACCACCTGGTTATGGTCATCAGTCCAAACGGAACAAATTTACAAAACGAGGGATTTCAAAAAGGTGGTAGAGAAACAGATGATGCATGAGTTCAGAATTTGCGTATAATCCTTTCTCCTCGTAATCTCAACCCGCTTTTGTTTTTCGATCGTTTTTCTACGCCTCCGCCGCTGTGACCTCAGATGTGAGGTGATCCAGGAGAAACAACCAAATAGTACCAGCGATAACGCTATCAAAGCTAATTATGGTGAGCTTAAGAAGGCGTAAACTCCTCGGACTTTGCACTGGCAAAGGCTCATTTGATGCTCCAGTTTCAAAGTTTTCTGAAAATTCAGATCTCGAGCACTGTTCGAACTTCATTAGTGTTCATCCCATCTTTTCGAACGAATTCAACGAGATAGAGAAGATTCCCGCTGCAAATTTAGAGACTGAACCATTGAGGGTATCAGTTTTTGACACATCAAAGGAGAAAAGTGATGAGCCATTTGAAGAACCGCCCGTAAAACATAGAAAACAACACCGGAGAAAGCATTTTCCAGAAGAATGTTTCTTAATGAGAGGTGTTTATTTCAAGAACATGAAATGGCAGGCTGCTATTAAGGTTGACAAGAAACAAATACACTTGGGAACTGTTGGATCACAAGAAGAAGCTGCTCATTTGTATGACAGAGCTGCTTTCATGTGTGGAAGGGAACCCAACTTCGAGCTCCCAGAGGCGGAGAAGAAAGAACTGAGAAAGTTTAATTGGGATGAGTTTTTAGCAATGACTCGACTCGCAATCGCTAATAAAAAACAAAAGAGGGTCAGCCCAGAATCAAAGAACTCTAAACTTCCTATTCTGGGGAGCGACGACTTGAACAAGAGACAGGATGAGTTCAGTGACCTCTCAGCTCCAGAAGATATTGAACCACTTGCCTTGAAATTTTGATGGAGATATGCAGTTTTGATTTCTTTTATTAAAAGGCCATTGAAATTTTGGATCATTGGATGTACATCAGTTTAGTGATTTAGGCAAATCCTTCGGGCATTTCATGAACAATGATCTTGCAACAATTTAGACATGAACAAGTCAGGAATTTAGTACATTCAGGTGAAAATCTACTTTAGATTCATAGTAAATCATTTACATGTATTGAGTTCAGCAAATCGCTACTAGTTTGAACACAGAACAGGAACGAC

Coding sequence (CDS)

ATGGTGAGCTTAAGAAGGCGTAAACTCCTCGGACTTTGCACTGGCAAAGGCTCATTTGATGCTCCAGTTTCAAAGTTTTCTGAAAATTCAGATCTCGAGCACTGTTCGAACTTCATTAGTGTTCATCCCATCTTTTCGAACGAATTCAACGAGATAGAGAAGATTCCCGCTGCAAATTTAGAGACTGAACCATTGAGGGTATCAGTTTTTGACACATCAAAGGAGAAAAGTGATGAGCCATTTGAAGAACCGCCCGTAAAACATAGAAAACAACACCGGAGAAAGCATTTTCCAGAAGAATGTTTCTTAATGAGAGGTGTTTATTTCAAGAACATGAAATGGCAGGCTGCTATTAAGGTTGACAAGAAACAAATACACTTGGGAACTGTTGGATCACAAGAAGAAGCTGCTCATTTGTATGACAGAGCTGCTTTCATGTGTGGAAGGGAACCCAACTTCGAGCTCCCAGAGGCGGAGAAGAAAGAACTGAGAAAGTTTAATTGGGATGAGTTTTTAGCAATGACTCGACTCGCAATCGCTAATAAAAAACAAAAGAGGGTCAGCCCAGAATCAAAGAACTCTAAACTTCCTATTCTGGGGAGCGACGACTTGAACAAGAGACAGGATGAGTTCAGTGACCTCTCAGCTCCAGAAGATATTGAACCACTTGCCTTGAAATTTTGA

Protein sequence

MVSLRRRKLLGLCTGKGSFDAPVSKFSENSDLEHCSNFISVHPIFSNEFNEIEKIPAANLETEPLRVSVFDTSKEKSDEPFEEPPVKHRKQHRRKHFPEECFLMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELPEAEKKELRKFNWDEFLAMTRLAIANKKQKRVSPESKNSKLPILGSDDLNKRQDEFSDLSAPEDIEPLALKF

Homology

[Close]

BLAST of CmaCh02G016710 vs. ExPASy Swiss-Prot
Match: Q56XP9 (Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana OX=3702 GN=At4g13040 PE=2 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 3.3e-36
Identity = 102/215 (47.44%), Postives = 123/215 (57.21%), Query Frame = 0


Query: 1   MVSLRRRKLLGLCTGKGSFDAPVSKFSENSDLEHCSN-----------FISVHPIFSNEF 60
           MVSLRRR+LLGLC G   +  P+   +    +    N             +V  +   + 
Sbjct: 1   MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 60

Query: 61  NEIEKIPAANLETEPLRVSVFDTSKEKSD--EPFEEPPVKHRKQHRRK--HFPEECFLMR 120
              E+      +    R    D S   SD   P  +PP K RKQHRRK  H  E C LMR
Sbjct: 61  AIEERSRRTRSKHMHFRSDYSDISPVNSDSISPKYQPP-KRRKQHRRKRVHNQEPC-LMR 120

Query: 121 GVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELPEAEKKELRK 180
           GVY+KNMKWQAAIKV+KKQIHLGT  SQEEAA LYDRAAFMCGREPNFEL E   +EL++
Sbjct: 121 GVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIRELKQ 180

Query: 181 FNWDEFLAMTRLAIANKKQK-RVSPESK--NSKLP 198
            +W+EFL  TR  I NKK K R+  E    N+ +P
Sbjct: 181 QSWEEFLNCTRRTITNKKPKSRIEHEDTKINASMP 213

[Close]

BLAST of CmaCh02G016710 vs. TAIR 10
Match: AT4G13040.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-37
Identity = 102/215 (47.44%), Postives = 123/215 (57.21%), Query Frame = 0


Query: 1   MVSLRRRKLLGLCTGKGSFDAPVSKFSENSDLEHCSN-----------FISVHPIFSNEF 60
           MVSLRRR+LLGLC G   +  P+   +    +    N             +V  +   + 
Sbjct: 1   MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 60

Query: 61  NEIEKIPAANLETEPLRVSVFDTSKEKSD--EPFEEPPVKHRKQHRRK--HFPEECFLMR 120
              E+      +    R    D S   SD   P  +PP K RKQHRRK  H  E C LMR
Sbjct: 61  AIEERSRRTRSKHMHFRSDYSDISPVNSDSISPKYQPP-KRRKQHRRKRVHNQEPC-LMR 120

Query: 121 GVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELPEAEKKELRK 180
           GVY+KNMKWQAAIKV+KKQIHLGT  SQEEAA LYDRAAFMCGREPNFEL E   +EL++
Sbjct: 121 GVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIRELKQ 180

Query: 181 FNWDEFLAMTRLAIANKKQK-RVSPESK--NSKLP 198
            +W+EFL  TR  I NKK K R+  E    N+ +P
Sbjct: 181 QSWEEFLNCTRRTITNKKPKSRIEHEDTKINASMP 213

[Close]

BLAST of CmaCh02G016710 vs. TAIR 10
Match: AT4G13040.3 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-37
Identity = 102/215 (47.44%), Postives = 123/215 (57.21%), Query Frame = 0


Query: 1   MVSLRRRKLLGLCTGKGSFDAPVSKFSENSDLEHCSN-----------FISVHPIFSNEF 60
           MVSLRRR+LLGLC G   +  P+   +    +    N             +V  +   + 
Sbjct: 21  MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARAAYNPGPAETVTTVIVEKK 80

Query: 61  NEIEKIPAANLETEPLRVSVFDTSKEKSD--EPFEEPPVKHRKQHRRK--HFPEECFLMR 120
              E+      +    R    D S   SD   P  +PP K RKQHRRK  H  E C LMR
Sbjct: 81  AIEERSRRTRSKHMHFRSDYSDISPVNSDSISPKYQPP-KRRKQHRRKRVHNQEPC-LMR 140

Query: 121 GVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELPEAEKKELRK 180
           GVY+KNMKWQAAIKV+KKQIHLGT  SQEEAA LYDRAAFMCGREPNFEL E   +EL++
Sbjct: 141 GVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIRELKQ 200

Query: 181 FNWDEFLAMTRLAIANKKQK-RVSPESK--NSKLP 198
            +W+EFL  TR  I NKK K R+  E    N+ +P
Sbjct: 201 QSWEEFLNCTRRTITNKKPKSRIEHEDTKINASMP 233

[Close]

BLAST of CmaCh02G016710 vs. TAIR 10
Match: AT4G13040.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 5.4e-34
Identity = 78/120 (65.00%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 83  EPPVKHRKQHRRK--HFPEECFLMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLY 142
           + P K RKQHRRK  H  E C LMRGVY+KNMKWQAAIKV+KKQIHLGT  SQEEAA LY
Sbjct: 39  DQPPKRRKQHRRKRVHNQEPC-LMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLY 98

Query: 143 DRAAFMCGREPNFELPEAEKKELRKFNWDEFLAMTRLAIANKKQK-RVSPESK--NSKLP 198
           DRAAFMCGREPNFEL E   +EL++ +W+EFL  TR  I NKK K R+  E    N+ +P
Sbjct: 99  DRAAFMCGREPNFELSEEVIRELKQQSWEEFLNCTRRTITNKKPKSRIEHEDTKINASMP 157

The following BLAST results are available for this feature:

BLAST of CmaCh02G016710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XP9	3.3e-36	47.44	Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis t...	[more]

BLAST of CmaCh02G016710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13040.1	2.3e-37	47.44	Integrase-type DNA-binding superfamily protein	[more]
AT4G13040.3	2.3e-37	47.44	Integrase-type DNA-binding superfamily protein	[more]
AT4G13040.2	5.4e-34	65.00	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 103..160 e-value: 7.3E-4 score: 19.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 105..146 e-value: 6.5E-5 score: 23.1
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 105..155 e-value: 5.5E-8 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..87
None	No IPR available	PANTHER	PTHR32467	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	coord: 1..209
None	No IPR available	PANTHER	PTHR32467:SF4	OS02G0499000 PROTEIN	coord: 1..209
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 104..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G016710.1	CmaCh02G016710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity