CmaCh02G016200 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G016200
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRING-H2 finger protein ATL29-like
LocationCma_Chr02: 9195361 .. 9197093 (-)
RNA-Seq ExpressionCmaCh02G016200
SyntenyCmaCh02G016200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTTGTCTCTCATAAGTTGGCAGATGAAGATTCTGTTTGTTCAGATAGAGTTTTGGTTGGTTCTTTACTTATTCTCGTTTCCAACCCGCTTAACTTCCAATCATCAAAATTTGAGGCATATGGTCTTTATCTGTTAGTGTCTTTTTCTGTTGTTACTATATGTAATCCTTCTCATTCAAAGAAAAGGGAAAATGTATGATTGTCACCACCTTCCCAGATCATCATTGAGTGATTCTTCTGTTTTCTGGGAAAGTCTTTAACCTTATTGTAATGGGAATATGAGTTAGTTCTTCACATGAGGCAGGCAGCAATTTTTATACACCGACATTGTGATCATTGAGGATCCCCTAGCGTTGTATTGGTCGTTGGACCATTACGTTGTTCCCTTTTTGTATAATGAGTCGTAGGTAGCAATATTCTCGTAATAGTTATCGTTCGTAGTTTGTATCTTCATCCCTTCAGATAGTTATCGTTCCTTTAGATTGTTGTTTATGTTTTGAAACTTGTTATTCTGTGTTGTTGCTGCATTAAGATACGAGTTATTGGTTTGAAACCCAACTCTAAATTACATGTGGTTTGATGCATAAGGACTTGCAGGGAAGAGGTTTGATTCCCCACAAAAATAGAACAAAACCCACAAAAGAAGGATTGAGAAGGGTGAGTGTTGGCCAAACAAATCCAACCAATACCTTAAACCACACAAACAAGAGCCAGTTATAACAAGGCGAATCAACCAACCAATGTGAGTTTCCTTCTTAAATCCCATTTCCTTTTCTTGTTCTTCTTCCGGACATTCCTCTCCTTCAGGTCCTTTTCCGGCCAATGTCCACCGATTTGACTCGCATTCCTTTCCCCGCACAAGATCACGGCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACCTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCACCGATTCCCCTGCCGCCCCTACTGGCCTCGACCCTCTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATCTGGGATTAGAATGCGCCATTTGCCTTATCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTCGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCGCCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACAACGATGCCAATGCCGATTCCGATGCCGATGATGATGAGGGGTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGATGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCAACAGGGTATTCGATAGTGAAGGCGAAAAGAGAAGGGGAAGGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATCCTAAGAGGGCATAATTGGACGGGGAGTTGCGTGACACTTGAGGAGTTGGCGAGGAACCCTGGCAATGGCGGTGGGTTATCAGAGCTCTGTGAAACGGGTGATCGGAATAACTTGCAGAGGCCGGCATGTTCAGTTTGA

mRNA sequence

ATGGACTTTGTCTCTCATAAGTTGGCAGATGAAGATTCTGTTTGTTCAGATAGAGTTTTGGTCCTTTTCCGGCCAATGTCCACCGATTTGACTCGCATTCCTTTCCCCGCACAAGATCACGGCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACCTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCACCGATTCCCCTGCCGCCCCTACTGGCCTCGACCCTCTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATCTGGGATTAGAATGCGCCATTTGCCTTATCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTCGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCGCCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACAACGATGCCAATGCCGATTCCGATGCCGATGATGATGAGGGGTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGATGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCAACAGGGTATTCGATAGTGAAGGCGAAAAGAGAAGGGGAAGGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATCCTAAGAGGGCATAATTGGACGGGGAGTTGCGTGACACTTGAGGAGTTGGCGAGGAACCCTGGCAATGGCGGTGGGTTATCAGAGCTCTGTGAAACGGGTGATCGGAATAACTTGCAGAGGCCGGCATGTTCAGTTTGA

Coding sequence (CDS)

ATGGACTTTGTCTCTCATAAGTTGGCAGATGAAGATTCTGTTTGTTCAGATAGAGTTTTGGTCCTTTTCCGGCCAATGTCCACCGATTTGACTCGCATTCCTTTCCCCGCACAAGATCACGGCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACCTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCACCGATTCCCCTGCCGCCCCTACTGGCCTCGACCCTCTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATCTGGGATTAGAATGCGCCATTTGCCTTATCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTCGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCGCCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACAACGATGCCAATGCCGATTCCGATGCCGATGATGATGAGGGGTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGATGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCAACAGGGTATTCGATAGTGAAGGCGAAAAGAGAAGGGGAAGGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATCCTAAGAGGGCATAATTGGACGGGGAGTTGCGTGACACTTGAGGAGTTGGCGAGGAACCCTGGCAATGGCGGTGGGTTATCAGAGCTCTGTGAAACGGGTGATCGGAATAACTTGCAGAGGCCGGCATGTTCAGTTTGA

Protein sequence

MDFVSHKLADEDSVCSDRVLVLFRPMSTDLTRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLILPEHVKIKILRGHNWTGSCVTLEELARNPGNGGGLSELCETGDRNNLQRPACSV
Homology
BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match: O49691 (RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 9.8e-58
Identity = 125/271 (46.13%), Postives = 172/271 (63.47%), Query Frame = 0

Query: 36  PAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRR---STSGNLLHPS 95
           P Q + +PP+T++LT+IL+ F F+GFF++Y C+C +D+ + +  L     + S N L   
Sbjct: 14  PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQP 73

Query: 96  TDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHV 155
              P  P GL+  +INSFPTFPYS +K+ R +  GLECAICL+EF+ +  LRLLT CYHV
Sbjct: 74  EAPPVNP-GLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133

Query: 156 FHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDND 215
           FHQECIDLW ESH+TCPVCRR+LD             PP  + + ++++ I   I E +D
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLD-----------PPPPPENTKPTVDEMIIDVIQETSD 193

Query: 216 ANADSDADDDEGSCSNKGKQRIETEEMEKEES-RKKFSRSHSTGYSIVKAKREGEGRHKL 275
              D        +  +      +T  ++KE++  +KFSRSHSTG+SIV+ K E E ++ L
Sbjct: 194 DEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDKYTL 253

Query: 276 ILPEHVKIKILRGHNWTGSCVTLEELARNPG 303
            LPEHVKIK+ RGH+ T SCVT  EL RN G
Sbjct: 254 RLPEHVKIKVTRGHSQTESCVTFAELIRNRG 272

BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match: Q9FIR0 (RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-50
Identity = 127/298 (42.62%), Postives = 171/298 (57.38%), Query Frame = 0

Query: 31  TRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRN--LRRSTSGNL 90
           T +P+P Q +  PP+ I+LT+IL+   F+GFF+IY C+C   +   + N         N 
Sbjct: 11  TTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQ 70

Query: 91  LHPSTD--SPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDES-FLRL 150
           +    +   P    GL+P +I S+P FP+S +K+ R D  GLECAICL+EF +E   LRL
Sbjct: 71  IQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRL 130

Query: 151 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISI 210
           LT CYHVFHQECID WLES+KTCPVCRRNLD ++                 E+I++ I  
Sbjct: 131 LTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNA----------------PENIKELIIE 190

Query: 211 DIDEDNDANADSDADDDEGSCSNK---GKQRIETEEMEKEESRKKFSRSHSTGYSIVKAK 270
            I E    NA  + D ++ S SN+    +Q     E + E    KFSRS +TG+SIV+ K
Sbjct: 191 VIQE----NAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNK 250

Query: 271 REGEGRHKLILPEHVKIKILRGH--NWTGSCVTLEELARNP----GNGGGLSELCETG 315
            E E R+ L LP+HVKIK+ R H  N T SC++  EL RN     G   G S + E+G
Sbjct: 251 PEEEDRYTLRLPDHVKIKVTRRHNNNQTESCISFGELVRNREGRFGEVSGQSLVPESG 288

BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match: Q6NKR1 (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-35
Identity = 103/263 (39.16%), Postives = 139/263 (52.85%), Query Frame = 0

Query: 42  SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTG 101
           S PVT+VLT +L+  +F GFFS++  + +++    + NL+R+  G+L+H +T  P   TG
Sbjct: 20  SMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVAT--PPENTG 79

Query: 102 LDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECIDLW 161
           LDP +I SFP F YS   +    N G ECAICL EF+DE  +RL+TVC H FH  CIDLW
Sbjct: 80  LDPFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLW 139

Query: 162 LESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDNDANADSDADD 221
            E HKTCPVCR  LD                + R ES  + ++I I + N        D+
Sbjct: 140 FELHKTCPVCRCELDPGM-----------IGSGRLESFHNTVTITIQDINH-------DE 199

Query: 222 DEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLILPEHVKIKI 281
           +    +   K+ IE        S  +FSRSHSTG+ +VK                  +K 
Sbjct: 200 ENPPTAGSSKRLIEA-------SAWRFSRSHSTGHFMVKT-------------TDANVKS 239

Query: 282 LRGHNWTGSCVTLEELARNPGNG 305
            R H  TGSCV+ +EL R  G G
Sbjct: 260 KRRHYQTGSCVSFDELTRYEGAG 239

BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match: Q9LQM2 (RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-27
Identity = 88/248 (35.48%), Postives = 128/248 (51.61%), Query Frame = 0

Query: 42  SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLH--SRNLRRSTSGNLLHPSTDSPAAP 101
           S PVTIVLT  L+  +F GFFS + C C+    +   + +  R+   NL+ PS  +P   
Sbjct: 71  SSPVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPS--NPPEN 130

Query: 102 TGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECID 161
            GLD  +I SFP +PYS +K+  +D    +C+ICL EF D+  +RL++ C H FH  CID
Sbjct: 131 LGLDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSFHTICID 190

Query: 162 LWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESI------EDAISIDIDEDNDA 221
           LW E HKTCPVCRR LD + R +       P     R  I       D ++I + E++ +
Sbjct: 191 LWFEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVRSEIHDEPLPRDTVTIIVHEEHPS 250

Query: 222 NADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLIL 281
                 +  +          IE+ E   + S  +F RSHSTG+SIV      +   +   
Sbjct: 251 TTIGSLEHTD---------EIESYERRMKASNLRFWRSHSTGHSIVVKTENEQEEEEEEE 302

BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 4.9e-25
Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 0

Query: 19  VLVLFRPMSTDLTRIPFPAQDHG--------SPPVTIVLTLILVAFLFVGFFSIYCCRC- 78
           VLVLF  +S    +   P Q H         SP + +V+ +++ A  F+GFF++Y   C 
Sbjct: 11  VLVLFLLLSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCT 70

Query: 79  -VVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGL 138
             VD  +       + +G      T++  A  GLD   I +FPTF YS++K  +     L
Sbjct: 71  GAVDGSV-------TPAGGARRRVTNATVA-RGLDAETIETFPTFVYSEVKTQKIGKGAL 130

Query: 139 ECAICLIEFNDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTS 198
           ECAICL EF D+  LRLL  C HVFH  CI  WL+ H TCPVCR NL        A++T 
Sbjct: 131 ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL--------AEQTP 190

Query: 199 DPPRTSRRESIEDAISIDIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKF 258
           +P         E  +  D++                      +Q+        E  R KF
Sbjct: 191 EP---------EVVVETDLE---------------------AQQQSAVPVPVVELPRVKF 240

Query: 259 SRSHSTGYSIVKAKREGEGRHKLILPEHVKIKILRGHNW 288
            RSH+TG+S+V    E   R  L +PE ++ KI+   NW
Sbjct: 251 PRSHTTGHSVV-LPGESTDRFTLRVPEELRKKIMA--NW 240

BLAST of CmaCh02G016200 vs. TAIR 10
Match: AT4G17920.1 (RING/U-box superfamily protein )

HSP 1 Score: 225.3 bits (573), Expect = 7.0e-59
Identity = 125/271 (46.13%), Postives = 172/271 (63.47%), Query Frame = 0

Query: 36  PAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRR---STSGNLLHPS 95
           P Q + +PP+T++LT+IL+ F F+GFF++Y C+C +D+ + +  L     + S N L   
Sbjct: 14  PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQP 73

Query: 96  TDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHV 155
              P  P GL+  +INSFPTFPYS +K+ R +  GLECAICL+EF+ +  LRLLT CYHV
Sbjct: 74  EAPPVNP-GLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133

Query: 156 FHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDND 215
           FHQECIDLW ESH+TCPVCRR+LD             PP  + + ++++ I   I E +D
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLD-----------PPPPPENTKPTVDEMIIDVIQETSD 193

Query: 216 ANADSDADDDEGSCSNKGKQRIETEEMEKEES-RKKFSRSHSTGYSIVKAKREGEGRHKL 275
              D        +  +      +T  ++KE++  +KFSRSHSTG+SIV+ K E E ++ L
Sbjct: 194 DEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDKYTL 253

Query: 276 ILPEHVKIKILRGHNWTGSCVTLEELARNPG 303
            LPEHVKIK+ RGH+ T SCVT  EL RN G
Sbjct: 254 RLPEHVKIKVTRGHSQTESCVTFAELIRNRG 272

BLAST of CmaCh02G016200 vs. TAIR 10
Match: AT5G46650.1 (RING/U-box superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 8.3e-52
Identity = 127/298 (42.62%), Postives = 171/298 (57.38%), Query Frame = 0

Query: 31  TRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRN--LRRSTSGNL 90
           T +P+P Q +  PP+ I+LT+IL+   F+GFF+IY C+C   +   + N         N 
Sbjct: 11  TTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQ 70

Query: 91  LHPSTD--SPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDES-FLRL 150
           +    +   P    GL+P +I S+P FP+S +K+ R D  GLECAICL+EF +E   LRL
Sbjct: 71  IQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRL 130

Query: 151 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISI 210
           LT CYHVFHQECID WLES+KTCPVCRRNLD ++                 E+I++ I  
Sbjct: 131 LTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNA----------------PENIKELIIE 190

Query: 211 DIDEDNDANADSDADDDEGSCSNK---GKQRIETEEMEKEESRKKFSRSHSTGYSIVKAK 270
            I E    NA  + D ++ S SN+    +Q     E + E    KFSRS +TG+SIV+ K
Sbjct: 191 VIQE----NAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNK 250

Query: 271 REGEGRHKLILPEHVKIKILRGH--NWTGSCVTLEELARNP----GNGGGLSELCETG 315
            E E R+ L LP+HVKIK+ R H  N T SC++  EL RN     G   G S + E+G
Sbjct: 251 PEEEDRYTLRLPDHVKIKVTRRHNNNQTESCISFGELVRNREGRFGEVSGQSLVPESG 288

BLAST of CmaCh02G016200 vs. TAIR 10
Match: AT2G35420.1 (RING/U-box superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 7.5e-37
Identity = 103/263 (39.16%), Postives = 139/263 (52.85%), Query Frame = 0

Query: 42  SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTG 101
           S PVT+VLT +L+  +F GFFS++  + +++    + NL+R+  G+L+H +T  P   TG
Sbjct: 20  SMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVAT--PPENTG 79

Query: 102 LDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECIDLW 161
           LDP +I SFP F YS   +    N G ECAICL EF+DE  +RL+TVC H FH  CIDLW
Sbjct: 80  LDPFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLW 139

Query: 162 LESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDNDANADSDADD 221
            E HKTCPVCR  LD                + R ES  + ++I I + N        D+
Sbjct: 140 FELHKTCPVCRCELDPGM-----------IGSGRLESFHNTVTITIQDINH-------DE 199

Query: 222 DEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLILPEHVKIKI 281
           +    +   K+ IE        S  +FSRSHSTG+ +VK                  +K 
Sbjct: 200 ENPPTAGSSKRLIEA-------SAWRFSRSHSTGHFMVKT-------------TDANVKS 239

Query: 282 LRGHNWTGSCVTLEELARNPGNG 305
            R H  TGSCV+ +EL R  G G
Sbjct: 260 KRRHYQTGSCVSFDELTRYEGAG 239

BLAST of CmaCh02G016200 vs. TAIR 10
Match: AT1G32361.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-28
Identity = 88/248 (35.48%), Postives = 128/248 (51.61%), Query Frame = 0

Query: 42  SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLH--SRNLRRSTSGNLLHPSTDSPAAP 101
           S PVTIVLT  L+  +F GFFS + C C+    +   + +  R+   NL+ PS  +P   
Sbjct: 71  SSPVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPS--NPPEN 130

Query: 102 TGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECID 161
            GLD  +I SFP +PYS +K+  +D    +C+ICL EF D+  +RL++ C H FH  CID
Sbjct: 131 LGLDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSFHTICID 190

Query: 162 LWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESI------EDAISIDIDEDNDA 221
           LW E HKTCPVCRR LD + R +       P     R  I       D ++I + E++ +
Sbjct: 191 LWFEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVRSEIHDEPLPRDTVTIIVHEEHPS 250

Query: 222 NADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLIL 281
                 +  +          IE+ E   + S  +F RSHSTG+SIV      +   +   
Sbjct: 251 TTIGSLEHTD---------EIESYERRMKASNLRFWRSHSTGHSIVVKTENEQEEEEEEE 302

BLAST of CmaCh02G016200 vs. TAIR 10
Match: AT5G27420.1 (carbon/nitrogen insensitive 1 )

HSP 1 Score: 116.7 bits (291), Expect = 3.5e-26
Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 0

Query: 19  VLVLFRPMSTDLTRIPFPAQDHG--------SPPVTIVLTLILVAFLFVGFFSIYCCRC- 78
           VLVLF  +S    +   P Q H         SP + +V+ +++ A  F+GFF++Y   C 
Sbjct: 11  VLVLFLLLSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCT 70

Query: 79  -VVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGL 138
             VD  +       + +G      T++  A  GLD   I +FPTF YS++K  +     L
Sbjct: 71  GAVDGSV-------TPAGGARRRVTNATVA-RGLDAETIETFPTFVYSEVKTQKIGKGAL 130

Query: 139 ECAICLIEFNDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTS 198
           ECAICL EF D+  LRLL  C HVFH  CI  WL+ H TCPVCR NL        A++T 
Sbjct: 131 ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL--------AEQTP 190

Query: 199 DPPRTSRRESIEDAISIDIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKF 258
           +P         E  +  D++                      +Q+        E  R KF
Sbjct: 191 EP---------EVVVETDLE---------------------AQQQSAVPVPVVELPRVKF 240

Query: 259 SRSHSTGYSIVKAKREGEGRHKLILPEHVKIKILRGHNW 288
            RSH+TG+S+V    E   R  L +PE ++ KI+   NW
Sbjct: 251 PRSHTTGHSVV-LPGESTDRFTLRVPEELRKKIMA--NW 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O496919.8e-5846.13RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1[more]
Q9FIR01.2e-5042.62RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1[more]
Q6NKR11.1e-3539.16RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1[more]
Q9LQM21.8e-2735.48RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1[more]
Q8LGA54.9e-2533.33E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ... [more]
Match NameE-valueIdentityDescription
AT4G17920.17.0e-5946.13RING/U-box superfamily protein [more]
AT5G46650.18.3e-5242.62RING/U-box superfamily protein [more]
AT2G35420.17.5e-3739.16RING/U-box superfamily protein [more]
AT1G32361.11.3e-2835.48RING/U-box superfamily protein [more]
AT5G27420.13.5e-2633.33carbon/nitrogen insensitive 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 130..171
e-value: 2.1E-6
score: 37.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 129..172
e-value: 2.1E-12
score: 47.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 130..172
score: 12.563043
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 106..182
e-value: 1.1E-19
score: 71.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..250
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 31..298
NoneNo IPR availablePANTHERPTHR14155:SF521RING-H2 FINGER PROTEIN ATL29coord: 31..298
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 129..172
e-value: 2.31587E-16
score: 70.0315
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 106..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G016200.1CmaCh02G016200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane