Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTTGTCTCTCATAAGTTGGCAGATGAAGATTCTGTTTGTTCAGATAGAGTTTTGGTTGGTTCTTTACTTATTCTCGTTTCCAACCCGCTTAACTTCCAATCATCAAAATTTGAGGCATATGGTCTTTATCTGTTAGTGTCTTTTTCTGTTGTTACTATATGTAATCCTTCTCATTCAAAGAAAAGGGAAAATGTATGATTGTCACCACCTTCCCAGATCATCATTGAGTGATTCTTCTGTTTTCTGGGAAAGTCTTTAACCTTATTGTAATGGGAATATGAGTTAGTTCTTCACATGAGGCAGGCAGCAATTTTTATACACCGACATTGTGATCATTGAGGATCCCCTAGCGTTGTATTGGTCGTTGGACCATTACGTTGTTCCCTTTTTGTATAATGAGTCGTAGGTAGCAATATTCTCGTAATAGTTATCGTTCGTAGTTTGTATCTTCATCCCTTCAGATAGTTATCGTTCCTTTAGATTGTTGTTTATGTTTTGAAACTTGTTATTCTGTGTTGTTGCTGCATTAAGATACGAGTTATTGGTTTGAAACCCAACTCTAAATTACATGTGGTTTGATGCATAAGGACTTGCAGGGAAGAGGTTTGATTCCCCACAAAAATAGAACAAAACCCACAAAAGAAGGATTGAGAAGGGTGAGTGTTGGCCAAACAAATCCAACCAATACCTTAAACCACACAAACAAGAGCCAGTTATAACAAGGCGAATCAACCAACCAATGTGAGTTTCCTTCTTAAATCCCATTTCCTTTTCTTGTTCTTCTTCCGGACATTCCTCTCCTTCAGGTCCTTTTCCGGCCAATGTCCACCGATTTGACTCGCATTCCTTTCCCCGCACAAGATCACGGCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACCTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCACCGATTCCCCTGCCGCCCCTACTGGCCTCGACCCTCTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATCTGGGATTAGAATGCGCCATTTGCCTTATCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTCGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCGCCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACAACGATGCCAATGCCGATTCCGATGCCGATGATGATGAGGGGTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGATGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCAACAGGGTATTCGATAGTGAAGGCGAAAAGAGAAGGGGAAGGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATCCTAAGAGGGCATAATTGGACGGGGAGTTGCGTGACACTTGAGGAGTTGGCGAGGAACCCTGGCAATGGCGGTGGGTTATCAGAGCTCTGTGAAACGGGTGATCGGAATAACTTGCAGAGGCCGGCATGTTCAGTTTGA
mRNA sequence
ATGGACTTTGTCTCTCATAAGTTGGCAGATGAAGATTCTGTTTGTTCAGATAGAGTTTTGGTCCTTTTCCGGCCAATGTCCACCGATTTGACTCGCATTCCTTTCCCCGCACAAGATCACGGCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACCTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCACCGATTCCCCTGCCGCCCCTACTGGCCTCGACCCTCTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATCTGGGATTAGAATGCGCCATTTGCCTTATCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTCGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCGCCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACAACGATGCCAATGCCGATTCCGATGCCGATGATGATGAGGGGTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGATGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCAACAGGGTATTCGATAGTGAAGGCGAAAAGAGAAGGGGAAGGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATCCTAAGAGGGCATAATTGGACGGGGAGTTGCGTGACACTTGAGGAGTTGGCGAGGAACCCTGGCAATGGCGGTGGGTTATCAGAGCTCTGTGAAACGGGTGATCGGAATAACTTGCAGAGGCCGGCATGTTCAGTTTGA
Coding sequence (CDS)
ATGGACTTTGTCTCTCATAAGTTGGCAGATGAAGATTCTGTTTGTTCAGATAGAGTTTTGGTCCTTTTCCGGCCAATGTCCACCGATTTGACTCGCATTCCTTTCCCCGCACAAGATCACGGCAGTCCTCCTGTCACCATTGTCCTCACACTCATCCTCGTTGCCTTCCTCTTCGTCGGTTTCTTCTCCATCTACTGCTGCCGCTGCGTTGTGGACTCCTTCCTCCATTCCCGCAACCTCCGCCGCTCCACCTCCGGCAACCTTCTCCACCCTTCCACCGATTCCCCTGCCGCCCCTACTGGCCTCGACCCTCTTCTCATCAACTCCTTTCCCACTTTCCCATATTCCAAAATCAAGGAATTTCGCAGTGACAATCTGGGATTAGAATGCGCCATTTGCCTTATCGAATTCAACGACGAGAGCTTCCTTCGCCTTCTCACTGTTTGCTACCATGTTTTCCATCAGGAGTGCATTGATCTCTGGCTCGAATCCCACAAGACCTGCCCTGTTTGCAGGAGAAATCTCGACTCCGATTCGCGGAGGAATTCTGCTGATAAGACCTCTGATCCACCACGAACTTCCCGCCGTGAGTCAATTGAAGATGCTATTAGTATTGATATTGATGAGGACAACGATGCCAATGCCGATTCCGATGCCGATGATGATGAGGGGTCTTGTTCGAACAAGGGAAAACAGAGGATTGAAACAGAGGAGATGGAGAAGGAAGAGAGTAGGAAGAAATTCTCGAGATCGCATTCAACAGGGTATTCGATAGTGAAGGCGAAAAGAGAAGGGGAAGGTCGGCATAAGTTGATATTACCGGAGCACGTGAAGATTAAGATCCTAAGAGGGCATAATTGGACGGGGAGTTGCGTGACACTTGAGGAGTTGGCGAGGAACCCTGGCAATGGCGGTGGGTTATCAGAGCTCTGTGAAACGGGTGATCGGAATAACTTGCAGAGGCCGGCATGTTCAGTTTGA
Protein sequence
MDFVSHKLADEDSVCSDRVLVLFRPMSTDLTRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLILPEHVKIKILRGHNWTGSCVTLEELARNPGNGGGLSELCETGDRNNLQRPACSV
Homology
BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match:
O49691 (RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 9.8e-58
Identity = 125/271 (46.13%), Postives = 172/271 (63.47%), Query Frame = 0
Query: 36 PAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRR---STSGNLLHPS 95
P Q + +PP+T++LT+IL+ F F+GFF++Y C+C +D+ + + L + S N L
Sbjct: 14 PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQP 73
Query: 96 TDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHV 155
P P GL+ +INSFPTFPYS +K+ R + GLECAICL+EF+ + LRLLT CYHV
Sbjct: 74 EAPPVNP-GLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133
Query: 156 FHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDND 215
FHQECIDLW ESH+TCPVCRR+LD PP + + ++++ I I E +D
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLD-----------PPPPPENTKPTVDEMIIDVIQETSD 193
Query: 216 ANADSDADDDEGSCSNKGKQRIETEEMEKEES-RKKFSRSHSTGYSIVKAKREGEGRHKL 275
D + + +T ++KE++ +KFSRSHSTG+SIV+ K E E ++ L
Sbjct: 194 DEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDKYTL 253
Query: 276 ILPEHVKIKILRGHNWTGSCVTLEELARNPG 303
LPEHVKIK+ RGH+ T SCVT EL RN G
Sbjct: 254 RLPEHVKIKVTRGHSQTESCVTFAELIRNRG 272
BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match:
Q9FIR0 (RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 1.2e-50
Identity = 127/298 (42.62%), Postives = 171/298 (57.38%), Query Frame = 0
Query: 31 TRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRN--LRRSTSGNL 90
T +P+P Q + PP+ I+LT+IL+ F+GFF+IY C+C + + N N
Sbjct: 11 TTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQ 70
Query: 91 LHPSTD--SPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDES-FLRL 150
+ + P GL+P +I S+P FP+S +K+ R D GLECAICL+EF +E LRL
Sbjct: 71 IQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRL 130
Query: 151 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISI 210
LT CYHVFHQECID WLES+KTCPVCRRNLD ++ E+I++ I
Sbjct: 131 LTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNA----------------PENIKELIIE 190
Query: 211 DIDEDNDANADSDADDDEGSCSNK---GKQRIETEEMEKEESRKKFSRSHSTGYSIVKAK 270
I E NA + D ++ S SN+ +Q E + E KFSRS +TG+SIV+ K
Sbjct: 191 VIQE----NAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNK 250
Query: 271 REGEGRHKLILPEHVKIKILRGH--NWTGSCVTLEELARNP----GNGGGLSELCETG 315
E E R+ L LP+HVKIK+ R H N T SC++ EL RN G G S + E+G
Sbjct: 251 PEEEDRYTLRLPDHVKIKVTRRHNNNQTESCISFGELVRNREGRFGEVSGQSLVPESG 288
BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match:
Q6NKR1 (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)
HSP 1 Score: 152.1 bits (383), Expect = 1.1e-35
Identity = 103/263 (39.16%), Postives = 139/263 (52.85%), Query Frame = 0
Query: 42 SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTG 101
S PVT+VLT +L+ +F GFFS++ + +++ + NL+R+ G+L+H +T P TG
Sbjct: 20 SMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVAT--PPENTG 79
Query: 102 LDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECIDLW 161
LDP +I SFP F YS + N G ECAICL EF+DE +RL+TVC H FH CIDLW
Sbjct: 80 LDPFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLW 139
Query: 162 LESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDNDANADSDADD 221
E HKTCPVCR LD + R ES + ++I I + N D+
Sbjct: 140 FELHKTCPVCRCELDPGM-----------IGSGRLESFHNTVTITIQDINH-------DE 199
Query: 222 DEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLILPEHVKIKI 281
+ + K+ IE S +FSRSHSTG+ +VK +K
Sbjct: 200 ENPPTAGSSKRLIEA-------SAWRFSRSHSTGHFMVKT-------------TDANVKS 239
Query: 282 LRGHNWTGSCVTLEELARNPGNG 305
R H TGSCV+ +EL R G G
Sbjct: 260 KRRHYQTGSCVSFDELTRYEGAG 239
BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match:
Q9LQM2 (RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 1.8e-27
Identity = 88/248 (35.48%), Postives = 128/248 (51.61%), Query Frame = 0
Query: 42 SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLH--SRNLRRSTSGNLLHPSTDSPAAP 101
S PVTIVLT L+ +F GFFS + C C+ + + + R+ NL+ PS +P
Sbjct: 71 SSPVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPS--NPPEN 130
Query: 102 TGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECID 161
GLD +I SFP +PYS +K+ +D +C+ICL EF D+ +RL++ C H FH CID
Sbjct: 131 LGLDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSFHTICID 190
Query: 162 LWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESI------EDAISIDIDEDNDA 221
LW E HKTCPVCRR LD + R + P R I D ++I + E++ +
Sbjct: 191 LWFEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVRSEIHDEPLPRDTVTIIVHEEHPS 250
Query: 222 NADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLIL 281
+ + IE+ E + S +F RSHSTG+SIV + +
Sbjct: 251 TTIGSLEHTD---------EIESYERRMKASNLRFWRSHSTGHSIVVKTENEQEEEEEEE 302
BLAST of CmaCh02G016200 vs. ExPASy Swiss-Prot
Match:
Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)
HSP 1 Score: 116.7 bits (291), Expect = 4.9e-25
Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 0
Query: 19 VLVLFRPMSTDLTRIPFPAQDHG--------SPPVTIVLTLILVAFLFVGFFSIYCCRC- 78
VLVLF +S + P Q H SP + +V+ +++ A F+GFF++Y C
Sbjct: 11 VLVLFLLLSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCT 70
Query: 79 -VVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGL 138
VD + + +G T++ A GLD I +FPTF YS++K + L
Sbjct: 71 GAVDGSV-------TPAGGARRRVTNATVA-RGLDAETIETFPTFVYSEVKTQKIGKGAL 130
Query: 139 ECAICLIEFNDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTS 198
ECAICL EF D+ LRLL C HVFH CI WL+ H TCPVCR NL A++T
Sbjct: 131 ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL--------AEQTP 190
Query: 199 DPPRTSRRESIEDAISIDIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKF 258
+P E + D++ +Q+ E R KF
Sbjct: 191 EP---------EVVVETDLE---------------------AQQQSAVPVPVVELPRVKF 240
Query: 259 SRSHSTGYSIVKAKREGEGRHKLILPEHVKIKILRGHNW 288
RSH+TG+S+V E R L +PE ++ KI+ NW
Sbjct: 251 PRSHTTGHSVV-LPGESTDRFTLRVPEELRKKIMA--NW 240
BLAST of CmaCh02G016200 vs. TAIR 10
Match:
AT4G17920.1 (RING/U-box superfamily protein )
HSP 1 Score: 225.3 bits (573), Expect = 7.0e-59
Identity = 125/271 (46.13%), Postives = 172/271 (63.47%), Query Frame = 0
Query: 36 PAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRR---STSGNLLHPS 95
P Q + +PP+T++LT+IL+ F F+GFF++Y C+C +D+ + + L + S N L
Sbjct: 14 PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQP 73
Query: 96 TDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHV 155
P P GL+ +INSFPTFPYS +K+ R + GLECAICL+EF+ + LRLLT CYHV
Sbjct: 74 EAPPVNP-GLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133
Query: 156 FHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDND 215
FHQECIDLW ESH+TCPVCRR+LD PP + + ++++ I I E +D
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLD-----------PPPPPENTKPTVDEMIIDVIQETSD 193
Query: 216 ANADSDADDDEGSCSNKGKQRIETEEMEKEES-RKKFSRSHSTGYSIVKAKREGEGRHKL 275
D + + +T ++KE++ +KFSRSHSTG+SIV+ K E E ++ L
Sbjct: 194 DEEDDHHRQQTTTQIDTWPSSGQTSSIKKEQNLPEKFSRSHSTGHSIVRNKPEEEDKYTL 253
Query: 276 ILPEHVKIKILRGHNWTGSCVTLEELARNPG 303
LPEHVKIK+ RGH+ T SCVT EL RN G
Sbjct: 254 RLPEHVKIKVTRGHSQTESCVTFAELIRNRG 272
BLAST of CmaCh02G016200 vs. TAIR 10
Match:
AT5G46650.1 (RING/U-box superfamily protein )
HSP 1 Score: 201.8 bits (512), Expect = 8.3e-52
Identity = 127/298 (42.62%), Postives = 171/298 (57.38%), Query Frame = 0
Query: 31 TRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRN--LRRSTSGNL 90
T +P+P Q + PP+ I+LT+IL+ F+GFF+IY C+C + + N N
Sbjct: 11 TTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQ 70
Query: 91 LHPSTD--SPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDES-FLRL 150
+ + P GL+P +I S+P FP+S +K+ R D GLECAICL+EF +E LRL
Sbjct: 71 IQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRL 130
Query: 151 LTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISI 210
LT CYHVFHQECID WLES+KTCPVCRRNLD ++ E+I++ I
Sbjct: 131 LTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNA----------------PENIKELIIE 190
Query: 211 DIDEDNDANADSDADDDEGSCSNK---GKQRIETEEMEKEESRKKFSRSHSTGYSIVKAK 270
I E NA + D ++ S SN+ +Q E + E KFSRS +TG+SIV+ K
Sbjct: 191 VIQE----NAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNK 250
Query: 271 REGEGRHKLILPEHVKIKILRGH--NWTGSCVTLEELARNP----GNGGGLSELCETG 315
E E R+ L LP+HVKIK+ R H N T SC++ EL RN G G S + E+G
Sbjct: 251 PEEEDRYTLRLPDHVKIKVTRRHNNNQTESCISFGELVRNREGRFGEVSGQSLVPESG 288
BLAST of CmaCh02G016200 vs. TAIR 10
Match:
AT2G35420.1 (RING/U-box superfamily protein )
HSP 1 Score: 152.1 bits (383), Expect = 7.5e-37
Identity = 103/263 (39.16%), Postives = 139/263 (52.85%), Query Frame = 0
Query: 42 SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTG 101
S PVT+VLT +L+ +F GFFS++ + +++ + NL+R+ G+L+H +T P TG
Sbjct: 20 SMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVAT--PPENTG 79
Query: 102 LDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECIDLW 161
LDP +I SFP F YS + N G ECAICL EF+DE +RL+TVC H FH CIDLW
Sbjct: 80 LDPFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLW 139
Query: 162 LESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESIEDAISIDIDEDNDANADSDADD 221
E HKTCPVCR LD + R ES + ++I I + N D+
Sbjct: 140 FELHKTCPVCRCELDPGM-----------IGSGRLESFHNTVTITIQDINH-------DE 199
Query: 222 DEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLILPEHVKIKI 281
+ + K+ IE S +FSRSHSTG+ +VK +K
Sbjct: 200 ENPPTAGSSKRLIEA-------SAWRFSRSHSTGHFMVKT-------------TDANVKS 239
Query: 282 LRGHNWTGSCVTLEELARNPGNG 305
R H TGSCV+ +EL R G G
Sbjct: 260 KRRHYQTGSCVSFDELTRYEGAG 239
BLAST of CmaCh02G016200 vs. TAIR 10
Match:
AT1G32361.1 (RING/U-box superfamily protein )
HSP 1 Score: 124.8 bits (312), Expect = 1.3e-28
Identity = 88/248 (35.48%), Postives = 128/248 (51.61%), Query Frame = 0
Query: 42 SPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLH--SRNLRRSTSGNLLHPSTDSPAAP 101
S PVTIVLT L+ +F GFFS + C C+ + + + R+ NL+ PS +P
Sbjct: 71 SSPVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPS--NPPEN 130
Query: 102 TGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEFNDESFLRLLTVCYHVFHQECID 161
GLD +I SFP +PYS +K+ +D +C+ICL EF D+ +RL++ C H FH CID
Sbjct: 131 LGLDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSFHTICID 190
Query: 162 LWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRESI------EDAISIDIDEDNDA 221
LW E HKTCPVCRR LD + R + P R I D ++I + E++ +
Sbjct: 191 LWFEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVRSEIHDEPLPRDTVTIIVHEEHPS 250
Query: 222 NADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYSIVKAKREGEGRHKLIL 281
+ + IE+ E + S +F RSHSTG+SIV + +
Sbjct: 251 TTIGSLEHTD---------EIESYERRMKASNLRFWRSHSTGHSIVVKTENEQEEEEEEE 302
BLAST of CmaCh02G016200 vs. TAIR 10
Match:
AT5G27420.1 (carbon/nitrogen insensitive 1 )
HSP 1 Score: 116.7 bits (291), Expect = 3.5e-26
Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 0
Query: 19 VLVLFRPMSTDLTRIPFPAQDHG--------SPPVTIVLTLILVAFLFVGFFSIYCCRC- 78
VLVLF +S + P Q H SP + +V+ +++ A F+GFF++Y C
Sbjct: 11 VLVLFLLLSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTVYIRHCT 70
Query: 79 -VVDSFLHSRNLRRSTSGNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGL 138
VD + + +G T++ A GLD I +FPTF YS++K + L
Sbjct: 71 GAVDGSV-------TPAGGARRRVTNATVA-RGLDAETIETFPTFVYSEVKTQKIGKGAL 130
Query: 139 ECAICLIEFNDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTS 198
ECAICL EF D+ LRLL C HVFH CI WL+ H TCPVCR NL A++T
Sbjct: 131 ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL--------AEQTP 190
Query: 199 DPPRTSRRESIEDAISIDIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKF 258
+P E + D++ +Q+ E R KF
Sbjct: 191 EP---------EVVVETDLE---------------------AQQQSAVPVPVVELPRVKF 240
Query: 259 SRSHSTGYSIVKAKREGEGRHKLILPEHVKIKILRGHNW 288
RSH+TG+S+V E R L +PE ++ KI+ NW
Sbjct: 251 PRSHTTGHSVV-LPGESTDRFTLRVPEELRKKIMA--NW 240
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O49691 | 9.8e-58 | 46.13 | RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1 | [more] |
Q9FIR0 | 1.2e-50 | 42.62 | RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1 | [more] |
Q6NKR1 | 1.1e-35 | 39.16 | RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1 | [more] |
Q9LQM2 | 1.8e-27 | 35.48 | RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1 | [more] |
Q8LGA5 | 4.9e-25 | 33.33 | E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ... | [more] |