CmaCh02G015950 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G015950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	tobamovirus multiplication protein 2A-like
Location	Cma_Chr02: 9064982 .. 9069299 (+)
RNA-Seq Expression	CmaCh02G015950
Synteny	CmaCh02G015950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAGAGGGTGCTTTGAGTGCCTATTGAAGCTTCTGAACTTCTTCTTATCCCTGCTGGGTCTTGCCATGGTAGGCTATGGGATTTACTTGTTAGTTGAGTACTTGCAATCTTCTAGTGATGTCCCAAGACCTCCGTTGAGTGGTGACCATGATGTGATTCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAACATCTTTGATAACCTTCCAAGAGCCTGGTATGACTTTTCTTTCTAATTACATCATCTATGTTTCTTGCTACTTGTAATGGCTGACTTTAGGCAGCACAAGTAGTCTGGAAAATAGCGAAGGACATTGAGCTTTCATAAGTAGCTCATTGATTTGGTGGCCATGTTTCCTCCCCTAGGTAAGAAGTTTGAGCCCCTTCTCCCACAAATTTGTGGTGTAAGAATAGGATATCCTTTTGGGGGGGAAAAAAAAAAAAGAGAGAGAGATAATGAGGGATATGAGGTACATGATCAAATGATGTGGTGGAGTTTATGAAGTAGATAAATTATGGTTCCACTCATTGAAGATATAAAAATTCTGGATTTCCTACACATTCCACAATTGTGCTATATCATTCAGTGTTGTAGAAGTCACATTAGTTCTAAGGTTCAATTTATTTGTTTGGCAACAGTTCAGTTTTAGTCAAAAGGATTTGCTTCTATTTTTTCTAGAACAGTATAAAGTTCAAGGGTCTTCTGTCATTGGTCAAATTTATGACATGTTGATTTCTCACGTTTGGATAAGTCAACAAACTCATTGAGTTTTTGGTTGAGCTCATGATTATTGCTTGAATAATTTTTGTTTTCCTTAGGTCTTCTTTCTATACATGTTTTTGTGTTTACCCCCAAATTTATGGTCTACTACTAAAATTCTGCAAAACAGAAATTCTGTTTCTATGCAAACTCATAGGGTTTTTGATCGAGCTCATGTTACAACCATATGATCCATAAAATCTCTACAATCGCATACTTGCATGAGTGGGCAACCGGCCCGTATGCTGATTTTTCTTTTTTAACTAAAAATAAACAGATAAGGTTGGCTGTTCTATTTTTTGACAGCTGAAATGATTGAAGTGCTTTGTCGAATCAACTTAGAAATCTTCTTCAATACAGATATCGAATATATATTGCTAACTGGACATGTCATCAATTTTTAACCAATATTCTTATTGCATAATTTCATGAAAACTTGAGCCAATTTATTGGAAGTCTCATCTAAATATGGGAACCGGTTTACATATTGATTTGCATTAGAATACAAAATAAGTATTGCCGGGAATATAAGATATTTCATATTTAAATAATGATATGCCATTTCAAAAGTACTGGATGTTACATCCTTGTCTCTTCTTTTCATTCAATCTGTGTTTTTCTTTCATCTCAAAGGGTTCTATTCCTCAATCTTCACACGTAAGCATATTCACGCCATTAATTAGTACCCTTTATCAGCCATAGATGATACAATAATATGGATATTTGTGGCCTCTGTTTAATCTGTTTCTTTTCTTTTATTTCTTTTGCAGGTTCATATACTTGTTCATTGCTGTGGGAGCCATTATCTTTGTTGTCTCTTGTTTTGGGTGTATTGGAGCTGCCACACGTAATGGATGCTGTTTAAGTTGTGTATCCTATTTGCCTGTTTGGCTGTATTGTTGTTTGATTTAAGAATTAGTAATGATAGAATTAGACCACCAGGGAACAACTTATTGGCTTCGGGATGAAAACACTGTTCATAGAGATTAGATGGTCACCTTAAATATAATACAACATGGTAATGATTTCCCATACAGTTCAATCTAAAAGATTTGACGCCAATTTTCATTTCAGTTTTATGTTACTGTATCCTTAATGATCACAGTATTCAGTTTTGGTGCTTCTACTGATTTTGGTGCAACTAGGATGTGCAGCATTCATATTCTTTGACAAACATTGGAGAGATGTGAGTGTTCACTCACAAGCTTAAGTTGAACATTTTAGTTCATTTTCTTATGTTATTTTTATTCTATAGGAAATTCCTGGGGATAAAACTGGGAACTTTGATAAAATCTATGAACTCCTAGAAGACAAGTGGGAAATCATCAGATGGGTTGCATTAGGAGCTGTAATTTTTGAGGTAAGCGAATCTAGAATAAAGGATTAACGTGCTAACCTTATTGAGATATTCAATTTTTGTGTTTGAATTCAAATCACATTTGATTTTTTTCCTTTTGATTTTTGGTTAATTTTATTTTTGTTTTTTTTATTTATCTACTCTTTACTGATTTAATTGTATGCATTCTTTACTATGTTTGTATGCCCCAGACTTTGTGCTTTTCAAGAAACAGATTGACACTGCTGAAATTCTGTCAGCACGAATGTGCACTTTACACCCTTCATCAAATTTTAGAGATCCATTTTTTTTCTCCTTTTTGTTGTTTCGTATCTCTTGAGTTCTGGCTTAGGACATTTTTTTCAGCACGAGTAATATGCGGTTGAAAGGTTCTTTAACACCCACTTGTGATTTGCAAATAAATACATTTTACTTCCACATCAGTGATTCAAAATTTGTTTTGTTGGTCACTAGAGGATTCATACTTTAATGTTGTTTTAATAATGTTTGCTTTACTTCTGATTTCCCCCTTATTGATTTCATAAACTATGTGCTTTCCCCTAAGCCAATTAGCTACAAACTCCCTTATACCAATGAAAGGCCGAGGATTTGCTTTGCACTGATTATAAGTTCTTGTTTCTCCCAATGAGAACAAAATTTACCCCGAGTAATATTCTGTTTCATTTTATTTTCAGGCTCTCCTTTTCTTGTTGGCCCTTGTGGTTCGTGCAGCAAACCGACCTGTAGACTATGACAGTGATGATGAGTACATTGCTCCAAGGCAACAAATCCGACAACCGTTGATCAATAGGCCTGTTGCTCCTGCAACTGGTGTACCTGTTGCTGGGACACTTGATCAACGACCAAGCCGAAATGATGCTTGGAGTGCACGAATGAGGGAAAAGGTATAAATTTTTCTAGGTTGAATTTTATTACTGAAAGTAATGAAAATGTAAAGATATGCACGACAAAAAGTCTTCCTCTACTTTTATTCTTGCATTTCTACTGTAAGAAACTGATACCGATAGAAACCAAGTAGCTAAAATATATTGCAAGATAAAATGTAAGACTATGAGCCTTCTACATTAACTCCCAAAGTATCCGAGTTACTTGGACCCTACCACTTTAAGCCACTAAACAATTGCATGCCTTCTACTCCTCCCACTGATTCTATTTATAATTAAATCCTACTGACAAACTCCTTGGCTAATTACTAATATGCCCTTAGTACTGTAATAATGTTTTTAACCATCCACATAGCTTGCATTCCTATGAGATACTAGGACTTCTCGTAATACTTTATCATGTTCTGTACAAATAGCTCATGTGAACAAGTATTCATTGTTAAATATTCTTTTTATTCCGCTTAGAATTTTATGCGATATCTTTGTGTACTCATGCTGATCAAACCTTGACTTCTTGATTTTAAGCTCCCTGCAATAATTTGGATGTGATTATTGATTCATATTGAGCTAAATTGCCATTCTGACGCTGTTCCTGTTTTTCTTTTCTGTTTGAAACAGTATGGGCTGGATACTTCCGAGTTCACATACAACCCATCTGAGTCTCACAGGTTTCAGCAAGTTGCCCCACAGCCAGCAGAAGAAAAGAGCCGCTGCACCATCATGTGATAAGTATGTCTGTCTTGTATTATTTGTTTCACTCAACTCTAGTGTTTTAGTGGGTCGGATGCTCGTTCTGCTTGTGTATAACCAAGAGATTTTTCCAGAGTCTGTACTTGTGTAACCTTGTCTTCCAAGGCAAAAAAAAAAGTTGTGTACTTGTTGTGTGAAACCATTCTTCTACATTTGGATTTCCTTTTTGTTCAAGATGGATGGGTCGACATTAAGGACAAAGGAAAATACTCTGCTTGCTGGAAGTTACTTTTAATTGTGAGTTCGATCCGAGTAAATATGCAATGTTATTTTTTGTCCTGCTAGGCCTCTGCTCTTCTCGAGCCCTTTCGACCTCCCTCGTTGTTGATATATTTATTCAGTTTCTAGGTATTTCGTCCATGTATTAGGCCTGTGTGTTTGGAGCTCTGCTTCTGATTTTGTATGTACAAAGAACGAGGACTTCAACCACCATATTTGGTTGCTGTAGTAATTTAGTCATTAGTTTTATAAGTTAAAACTCTATAAATAGTCCTACAAACTCATTGAAATCATAGAGATGTAATTTTACATATTTTTTAGTTCACCAA

mRNA sequence

ATGGCCTGCAGAGGGTGCTTTGAGTGCCTATTGAAGCTTCTGAACTTCTTCTTATCCCTGCTGGGTCTTGCCATGGTAGGCTATGGGATTTACTTGTTAGTTGAGTACTTGCAATCTTCTAGTGATGTCCCAAGACCTCCGTTGAGTGGTGACCATGATGTGATTCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAACATCTTTGATAACCTTCCAAGAGCCTGGTTCATATACTTGTTCATTGCTGTGGGAGCCATTATCTTTGTTGTCTCTTGTTTTGGGTGTATTGGAGCTGCCACACGTAATGGATGCTGTTTAAGTTGTTATTCAGTTTTGGTGCTTCTACTGATTTTGGTGCAACTAGGATGTGCAGCATTCATATTCTTTGACAAACATTGGAGAGATGAAATTCCTGGGGATAAAACTGGGAACTTTGATAAAATCTATGAACTCCTAGAAGACAAGTGGGAAATCATCAGATGGGTTGCATTAGGAGCTGTAATTTTTGAGGCTCTCCTTTTCTTGTTGGCCCTTGTGGTTCGTGCAGCAAACCGACCTGTAGACTATGACAGTGATGATGAGTACATTGCTCCAAGGCAACAAATCCGACAACCGTTGATCAATAGGCCTGTTGCTCCTGCAACTGGTGTACCTGTTGCTGGGACACTTGATCAACGACCAAGCCGAAATGATGCTTGGAGTGCACGAATGAGGGAAAAGTATGGGCTGGATACTTCCGAGTTCACATACAACCCATCTGAGTCTCACAGGTTTCAGCAAGTTGCCCCACAGCCAGCAGAAGAAAAGAGCCGCTGCACCATCATGTGATAAGTATGTCTGTCTTGTATTATTTGTTTCACTCAACTCTAGTGTTTTAGTGGGTCGGATGCTCGTTCTGCTTGTGTATAACCAAGAGATTTTTCCAGAGTCTGTACTTGTGTAACCTTGTCTTCCAAGGCAAAAAAAAAAGTTGTGTACTTGTTGTGTGAAACCATTCTTCTACATTTGGATTTCCTTTTTGTTCAAGATGGATGGGTCGACATTAAGGACAAAGGAAAATACTCTGCTTGCTGGAAGTTACTTTTAATTGTGAGTTCGATCCGAGTAAATATGCAATGTTATTTTTTGTCCTGCTAGGCCTCTGCTCTTCTCGAGCCCTTTCGACCTCCCTCGTTGTTGATATATTTATTCAGTTTCTAGGTATTTCGTCCATGTATTAGGCCTGTGTGTTTGGAGCTCTGCTTCTGATTTTGTATGTACAAAGAACGAGGACTTCAACCACCATATTTGGTTGCTGTAGTAATTTAGTCATTAGTTTTATAAGTTAAAACTCTATAAATAGTCCTACAAACTCATTGAAATCATAGAGATGTAATTTTACATATTTTTTAGTTCACCAA

Coding sequence (CDS)

ATGGCCTGCAGAGGGTGCTTTGAGTGCCTATTGAAGCTTCTGAACTTCTTCTTATCCCTGCTGGGTCTTGCCATGGTAGGCTATGGGATTTACTTGTTAGTTGAGTACTTGCAATCTTCTAGTGATGTCCCAAGACCTCCGTTGAGTGGTGACCATGATGTGATTCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAACATCTTTGATAACCTTCCAAGAGCCTGGTTCATATACTTGTTCATTGCTGTGGGAGCCATTATCTTTGTTGTCTCTTGTTTTGGGTGTATTGGAGCTGCCACACGTAATGGATGCTGTTTAAGTTGTTATTCAGTTTTGGTGCTTCTACTGATTTTGGTGCAACTAGGATGTGCAGCATTCATATTCTTTGACAAACATTGGAGAGATGAAATTCCTGGGGATAAAACTGGGAACTTTGATAAAATCTATGAACTCCTAGAAGACAAGTGGGAAATCATCAGATGGGTTGCATTAGGAGCTGTAATTTTTGAGGCTCTCCTTTTCTTGTTGGCCCTTGTGGTTCGTGCAGCAAACCGACCTGTAGACTATGACAGTGATGATGAGTACATTGCTCCAAGGCAACAAATCCGACAACCGTTGATCAATAGGCCTGTTGCTCCTGCAACTGGTGTACCTGTTGCTGGGACACTTGATCAACGACCAAGCCGAAATGATGCTTGGAGTGCACGAATGAGGGAAAAGTATGGGCTGGATACTTCCGAGTTCACATACAACCCATCTGAGTCTCACAGGTTTCAGCAAGTTGCCCCACAGCCAGCAGAAGAAAAGAGCCGCTGCACCATCATGTGA

Protein sequence

MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSSSDVPRPPLSGDHDVIQLGRPMLMAVSLSSNIFDNLPRAWFIYLFIAVGAIIFVVSCFGCIGAATRNGCCLSCYSVLVLLLILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFLLALVVRAANRPVDYDSDDEYIAPRQQIRQPLINRPVAPATGVPVAGTLDQRPSRNDAWSARMREKYGLDTSEFTYNPSESHRFQQVAPQPAEEKSRCTIM

Homology

[Close]

BLAST of CmaCh02G015950 vs. ExPASy Swiss-Prot
Match: Q9C5W7 (Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A PE=1 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 3.0e-116
Identity = 202/280 (72.14%), Postives = 233/280 (83.21%), Query Frame = 0


Query: 1   MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQ-SSSDVPRPPLSGDHDVIQLGR 60
           MACRGC ECLLKLLNF L++ GL M+GYGIYL VEY + + + V     +GD   +  GR
Sbjct: 1   MACRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGR 60

Query: 61  PMLMAVSLSSNIFDNLPRAWFIYLFIAVGAIIFVVSCFGCIGAATRNGCCLSCYSVLVLL 120
           P+LMAVSLSSNIFDNLP+AWFIYLFI +G  +FV+SC GC+G  +R+ CCLSCYS+L++L
Sbjct: 61  PILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLIL 120

Query: 121 LILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFL 180
           LILV+LG AAFIFFD  WRDE+P D+TGNFD IY  L + W+I+RWVALGAV+FEALLFL
Sbjct: 121 LILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFEALLFL 180

Query: 181 LALVVRAANRPVDYDSDDEYIAPRQQIRQPLINRPVAPATGVPVAGTLDQRPSRNDAWSA 240
           LAL+VRAAN P +YDSDDEY+APRQQIRQP INR  AP TGVPVA TLDQRPSR+D WSA
Sbjct: 181 LALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSRSDPWSA 240

Query: 241 RMREKYGLDTSEFTYNPSESHRFQQVAPQPAEEKSRCTIM 280
           RMREKYGLDTSEFTYNPSESHRFQQ+  QP EEK RCTIM
Sbjct: 241 RMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280

[Close]

BLAST of CmaCh02G015950 vs. ExPASy Swiss-Prot
Match: Q93XY5 (Tetraspanin-18 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-30
Identity = 91/269 (33.83%), Postives = 138/269 (51.30%), Query Frame = 0


Query: 3   CRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSSSDVPRPPL---SGDHDVIQLGR 62
           C   F   LK+LNF  + +G++++ Y I++L EY +     P P     SG      +  
Sbjct: 6   CHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSE 65

Query: 63  PM------LMAVSLSSNIFD--------NLPRAWFIYLFIAVGAIIFVVSCFGCIGAATR 122
           P+      + ++ L SN  D        +LP  WFIY F+AVG ++ +V+  G I A   
Sbjct: 66  PLKNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAI 125

Query: 123 NGCCLSCYSVLVLLLILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRW 182
           NGCCL  YS+L  LLIL++    A+I  D+HW  ++P D TG    +   +E+  +I +W
Sbjct: 126 NGCCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKW 185

Query: 183 VALGAVIFEALLFLLALVVRA----ANRPVDYDSDDEYIAPRQQIRQPLINRPVAPATGV 242
           V +  V  + L  LLA+V+RA        +D + DDE   PR +   PL+     P    
Sbjct: 186 VGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEEDDE--NPRSRTWDPLL----GPQGNQ 245

Query: 243 PVAGTLDQRPSRNDAWSARMREKYGLDTS 251
             AG+     S+ + WS+R+REKYGL+ S
Sbjct: 246 APAGS-----SKIENWSSRIREKYGLNQS 263

[Close]

BLAST of CmaCh02G015950 vs. ExPASy Swiss-Prot
Match: Q9SVU4 (Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH1 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-29
Identity = 87/285 (30.53%), Postives = 140/285 (49.12%), Query Frame = 0


Query: 3   CRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSSSDVP---RPPLSGDHD------ 62
           C   F  +LK+LNF  + +G++++ Y I++L +Y       P   +PP +   D      
Sbjct: 6   CHVSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDSSYSFS 65

Query: 63  --VIQLGR---------PMLMAVSLSSNIFD--------NLPRAWFIYLFIAVGAIIFVV 122
             +I++             +  + L S   D        +LP  WFIY F+A+G ++ +V
Sbjct: 66  NSIIEINSVSDSLKNPIDFVSGIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAIGILVCIV 125

Query: 123 SCFGCIGAATRNGCCLSCYSVLVLLLILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYE 182
           +  G I A   NGCCL  YS+L  LLI+++     FI  D+HW  ++P D TG  + +  
Sbjct: 126 TIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTGELNSLRA 185

Query: 183 LLEDKWEIIRWVALGAVIFEALLFLLALVVRA--ANRPVDYDSDDEYIAPRQQIRQPLIN 242
            +E+  +I +WV +  V  + L  LLALV+RA  + R  + D +D++  P  + R  L+ 
Sbjct: 186 FIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDEDDFENPMSRARDNLLG 245

Query: 243 RPVAPATGVPVAGTLDQRPSRNDAWSARMREKYGLDTSEFTYNPS 258
                    P A       S  D W +R+REKYGL  S+ ++ PS
Sbjct: 246 ---------PQANQTSSGSSNIDNWRSRIREKYGLINSQ-SHTPS 280

[Close]

BLAST of CmaCh02G015950 vs. ExPASy Swiss-Prot
Match: Q940P5 (Tetraspanin-19 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH3 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.2e-25
Identity = 69/212 (32.55%), Postives = 113/212 (53.30%), Query Frame = 0


Query: 4   RGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSSSDVPRPPLSGDHDVIQLGRPMLM 63
           R C + +LKL+N  + ++G+AM+ Y ++L+ ++ +   ++P      DH           
Sbjct: 6   RSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPF--ADSDH----------- 65

Query: 64  AVSLSSNIFDNLPRAWFIYLFIAVGAIIFVVSCFGCIGAATRNGCCLSCYSVLVLLLILV 123
                       P  WFIY F+ +GAI+ VV+C G I A T NGCCL  Y   ++LL +V
Sbjct: 66  ------------PVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMV 125

Query: 124 QLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFLLALV 183
           + G  A IF ++ W+ + P D +G F +  + +E  ++I +W+ L  V  + L  L+A++
Sbjct: 126 EGGVVADIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAML 185

Query: 184 VRA--ANRPVDYDSDDEY----IAPRQQIRQP 210
           ++A   +    YDSDDEY    +A  Q  RQP
Sbjct: 186 LKALGPHPHRHYDSDDEYNVSTVALLQDARQP 192

[Close]

BLAST of CmaCh02G015950 vs. ExPASy Swiss-Prot
Match: Q80WR1 (Tetraspanin-18 OS=Mus musculus OX=10090 GN=Tspan18 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-04
Identity = 38/149 (25.50%), Postives = 71/149 (47.65%), Query Frame = 0


Query: 3   CRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSSSDVPRPPLSGDHDVIQLGRPML 62
           C  C + L+ + NFF+ L G  ++G GI++LV+             +G  +++    P+L
Sbjct: 5   CLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVD------------PTGFREIVAT-NPLL 64

Query: 63  MAVSLSSNIFDNLPRAWFIYLFIAVGAIIFVVSCFGCIGAATRNGCCLSCYSVLVLLLIL 122
              +               Y+ +A+G ++F++   GC GA   N C L  + + +L++ L
Sbjct: 65  TTGA---------------YIVLAMGGLLFLLGFLGCCGAVRENRCLLLFFFLFILIIFL 124

Query: 123 VQLGCA--AFIFFDKHWRDEIPGDKTGNF 150
           V+L  A  AFIF +   R+    + T ++
Sbjct: 125 VELSAAILAFIFREHLTREFFTKELTKHY 125

[Close]

BLAST of CmaCh02G015950 vs. TAIR 10
Match: AT1G32400.1 (tobamovirus multiplication 2A )

HSP 1 Score: 419.5 bits (1077), Expect = 2.2e-117
Identity = 202/280 (72.14%), Postives = 233/280 (83.21%), Query Frame = 0


Query: 1   MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQ-SSSDVPRPPLSGDHDVIQLGR 60
           MACRGC ECLLKLLNF L++ GL M+GYGIYL VEY + + + V     +GD   +  GR
Sbjct: 1   MACRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGR 60

Query: 61  PMLMAVSLSSNIFDNLPRAWFIYLFIAVGAIIFVVSCFGCIGAATRNGCCLSCYSVLVLL 120
           P+LMAVSLSSNIFDNLP+AWFIYLFI +G  +FV+SC GC+G  +R+ CCLSCYS+L++L
Sbjct: 61  PILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLIL 120

Query: 121 LILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFL 180
           LILV+LG AAFIFFD  WRDE+P D+TGNFD IY  L + W+I+RWVALGAV+FEALLFL
Sbjct: 121 LILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFEALLFL 180

Query: 181 LALVVRAANRPVDYDSDDEYIAPRQQIRQPLINRPVAPATGVPVAGTLDQRPSRNDAWSA 240
           LAL+VRAAN P +YDSDDEY+APRQQIRQP INR  AP TGVPVA TLDQRPSR+D WSA
Sbjct: 181 LALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSRSDPWSA 240

Query: 241 RMREKYGLDTSEFTYNPSESHRFQQVAPQPAEEKSRCTIM 280
           RMREKYGLDTSEFTYNPSESHRFQQ+  QP EEK RCTIM
Sbjct: 241 RMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280

[Close]

BLAST of CmaCh02G015950 vs. TAIR 10
Match: AT1G32400.2 (tobamovirus multiplication 2A )

HSP 1 Score: 419.5 bits (1077), Expect = 2.2e-117
Identity = 202/280 (72.14%), Postives = 233/280 (83.21%), Query Frame = 0


Query: 1   MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQ-SSSDVPRPPLSGDHDVIQLGR 60
           MACRGC ECLLKLLNF L++ GL M+GYGIYL VEY + + + V     +GD   +  GR
Sbjct: 1   MACRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGR 60

Query: 61  PMLMAVSLSSNIFDNLPRAWFIYLFIAVGAIIFVVSCFGCIGAATRNGCCLSCYSVLVLL 120
           P+LMAVSLSSNIFDNLP+AWFIYLFI +G  +FV+SC GC+G  +R+ CCLSCYS+L++L
Sbjct: 61  PILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLIL 120

Query: 121 LILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFL 180
           LILV+LG AAFIFFD  WRDE+P D+TGNFD IY  L + W+I+RWVALGAV+FEALLFL
Sbjct: 121 LILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFEALLFL 180

Query: 181 LALVVRAANRPVDYDSDDEYIAPRQQIRQPLINRPVAPATGVPVAGTLDQRPSRNDAWSA 240
           LAL+VRAAN P +YDSDDEY+APRQQIRQP INR  AP TGVPVA TLDQRPSR+D WSA
Sbjct: 181 LALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSRSDPWSA 240

Query: 241 RMREKYGLDTSEFTYNPSESHRFQQVAPQPAEEKSRCTIM 280
           RMREKYGLDTSEFTYNPSESHRFQQ+  QP EEK RCTIM
Sbjct: 241 RMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280

[Close]

BLAST of CmaCh02G015950 vs. TAIR 10
Match: AT1G32400.3 (tobamovirus multiplication 2A )

HSP 1 Score: 419.5 bits (1077), Expect = 2.2e-117
Identity = 202/280 (72.14%), Postives = 233/280 (83.21%), Query Frame = 0


Query: 1   MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQ-SSSDVPRPPLSGDHDVIQLGR 60
           MACRGC ECLLKLLNF L++ GL M+GYGIYL VEY + + + V     +GD   +  GR
Sbjct: 1   MACRGCLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGR 60

Query: 61  PMLMAVSLSSNIFDNLPRAWFIYLFIAVGAIIFVVSCFGCIGAATRNGCCLSCYSVLVLL 120
           P+LMAVSLSSNIFDNLP+AWFIYLFI +G  +FV+SC GC+G  +R+ CCLSCYS+L++L
Sbjct: 61  PILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLIL 120

Query: 121 LILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEALLFL 180
           LILV+LG AAFIFFD  WRDE+P D+TGNFD IY  L + W+I+RWVALGAV+FEALLFL
Sbjct: 121 LILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFEALLFL 180

Query: 181 LALVVRAANRPVDYDSDDEYIAPRQQIRQPLINRPVAPATGVPVAGTLDQRPSRNDAWSA 240
           LAL+VRAAN P +YDSDDEY+APRQQIRQP INR  AP TGVPVA TLDQRPSR+D WSA
Sbjct: 181 LALMVRAANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSRSDPWSA 240

Query: 241 RMREKYGLDTSEFTYNPSESHRFQQVAPQPAEEKSRCTIM 280
           RMREKYGLDTSEFTYNPSESHRFQQ+  QP EEK RCTIM
Sbjct: 241 RMREKYGLDTSEFTYNPSESHRFQQMPAQPNEEKGRCTIM 280

[Close]

BLAST of CmaCh02G015950 vs. TAIR 10
Match: AT2G20230.1 (Tetraspanin family protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-31
Identity = 91/269 (33.83%), Postives = 138/269 (51.30%), Query Frame = 0


Query: 3   CRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSSSDVPRPPL---SGDHDVIQLGR 62
           C   F   LK+LNF  + +G++++ Y I++L EY +     P P     SG      +  
Sbjct: 6   CHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSE 65

Query: 63  PM------LMAVSLSSNIFD--------NLPRAWFIYLFIAVGAIIFVVSCFGCIGAATR 122
           P+      + ++ L SN  D        +LP  WFIY F+AVG ++ +V+  G I A   
Sbjct: 66  PLKNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAI 125

Query: 123 NGCCLSCYSVLVLLLILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRW 182
           NGCCL  YS+L  LLIL++    A+I  D+HW  ++P D TG    +   +E+  +I +W
Sbjct: 126 NGCCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKW 185

Query: 183 VALGAVIFEALLFLLALVVRA----ANRPVDYDSDDEYIAPRQQIRQPLINRPVAPATGV 242
           V +  V  + L  LLA+V+RA        +D + DDE   PR +   PL+     P    
Sbjct: 186 VGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEEDDE--NPRSRTWDPLL----GPQGNQ 245

Query: 243 PVAGTLDQRPSRNDAWSARMREKYGLDTS 251
             AG+     S+ + WS+R+REKYGL+ S
Sbjct: 246 APAGS-----SKIENWSSRIREKYGLNQS 263

[Close]

BLAST of CmaCh02G015950 vs. TAIR 10
Match: AT4G28770.1 (Tetraspanin family protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-30
Identity = 87/285 (30.53%), Postives = 140/285 (49.12%), Query Frame = 0


Query: 3   CRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSSSDVP---RPPLSGDHD------ 62
           C   F  +LK+LNF  + +G++++ Y I++L +Y       P   +PP +   D      
Sbjct: 6   CHVSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDSSYSFS 65

Query: 63  --VIQLGR---------PMLMAVSLSSNIFD--------NLPRAWFIYLFIAVGAIIFVV 122
             +I++             +  + L S   D        +LP  WFIY F+A+G ++ +V
Sbjct: 66  NSIIEINSVSDSLKNPIDFVSGIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAIGILVCIV 125

Query: 123 SCFGCIGAATRNGCCLSCYSVLVLLLILVQLGCAAFIFFDKHWRDEIPGDKTGNFDKIYE 182
           +  G I A   NGCCL  YS+L  LLI+++     FI  D+HW  ++P D TG  + +  
Sbjct: 126 TIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTGELNSLRA 185

Query: 183 LLEDKWEIIRWVALGAVIFEALLFLLALVVRA--ANRPVDYDSDDEYIAPRQQIRQPLIN 242
            +E+  +I +WV +  V  + L  LLALV+RA  + R  + D +D++  P  + R  L+ 
Sbjct: 186 FIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDEDDFENPMSRARDNLLG 245

Query: 243 RPVAPATGVPVAGTLDQRPSRNDAWSARMREKYGLDTSEFTYNPS 258
                    P A       S  D W +R+REKYGL  S+ ++ PS
Sbjct: 246 ---------PQANQTSSGSSNIDNWRSRIREKYGLINSQ-SHTPS 280

The following BLAST results are available for this feature:

BLAST of CmaCh02G015950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5W7	3.0e-116	72.14	Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A P...	[more]
Q93XY5	2.5e-30	33.83	Tetraspanin-18 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH2 PE=1 SV=1	[more]
Q9SVU4	2.2e-29	30.53	Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH1 PE=1 SV=1	[more]
Q940P5	7.2e-25	32.55	Tetraspanin-19 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH3 PE=2 SV=1	[more]
Q80WR1	1.8e-04	25.50	Tetraspanin-18 OS=Mus musculus OX=10090 GN=Tspan18 PE=2 SV=1	[more]

BLAST of CmaCh02G015950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32400.1	2.2e-117	72.14	tobamovirus multiplication 2A	[more]
AT1G32400.2	2.2e-117	72.14	tobamovirus multiplication 2A	[more]
AT1G32400.3	2.2e-117	72.14	tobamovirus multiplication 2A	[more]
AT2G20230.1	1.8e-31	33.83	Tetraspanin family protein	[more]
AT4G28770.1	1.5e-30	30.53	Tetraspanin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 9..137 e-value: 8.1E-16 score: 58.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..279
None	No IPR available	PANTHER	PTHR19282	TETRASPANIN	coord: 2..252
None	No IPR available	PANTHER	PTHR19282:SF417	TOBAMOVIRUS MULTIPLICATION PROTEIN 2A	coord: 2..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G015950.1	CmaCh02G015950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane