CmaCh02G015810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G015810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase II subunit RPB2
Location	Cma_Chr02: 8981291 .. 8981628 (+)
RNA-Seq Expression	CmaCh02G015810
Synteny	CmaCh02G015810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTGAATTGGGCGGAAATTCTCCAGAGATTGAGATGGAGAAATCCTTCACTCTGATTCAGACCATTGCATCTGTTGGAGCTTTCTCTGCGATTTCCTTCTAGTGCGAATTTATTTCTCATTTTCACTTCTTGATCCATTGTGCGTGAATTTGGTCGCGATTTCTTCTCTGGATTTTGTAACTCATTCATCTTCCTTCATTTTTGTTTGCTAGGTTTTCATGTTTGGAAGAGAGTCTGCTCGAAAAGACTGGGGAGATTTGATTGAAGATCTACGCCGTGGAATCTCCTACTGCGATTCTTCTTTTGCAACTCCTCATTCTCGACCTGGCACT

mRNA sequence

ATGAGTCCTGAATTGGGCGGAAATTCTCCAGAGATTGAGATGGAGAAATCCTTCACTCTGATTCAGACCATTGCATCTGTTTTCATGTTTGGAAGAGAGTCTGCTCGAAAAGACTGGGGAGATTTGATTGAAGATCTACGCCGTGGAATCTCCTACTGCGATTCTTCTTTTGCAACTCCTCATTCTCGACCTGGCACT

Coding sequence (CDS)

ATGAGTCCTGAATTGGGCGGAAATTCTCCAGAGATTGAGATGGAGAAATCCTTCACTCTGATTCAGACCATTGCATCTGTTTTCATGTTTGGAAGAGAGTCTGCTCGAAAAGACTGGGGAGATTTGATTGAAGATCTACGCCGTGGAATCTCCTACTGCGATTCTTCTTTTGCAACTCCTCATTCTCGACCTGGCACT

Protein sequence

MSPELGGNSPEIEMEKSFTLIQTIASVFMFGRESARKDWGDLIEDLRRGISYCDSSFATPHSRPGT

Homology

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BLAST of CmaCh02G015810 vs. TAIR 10
Match: AT4G17085.1 (Putative membrane lipoprotein )

HSP 1 Score: 57.0 bits (136), Expect = 6.7e-09
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 14 MEKSFTLIQTIASV-----------FMFGRESARKDWGDLIEDLRRGISYCDSSFATPHS 63
          M+KSF+LIQT+A             FMFGRESARK+ G LIE+LRRG S  DS   TPHS
Sbjct: 1  MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDS---TPHS 57

The following BLAST results are available for this feature:

BLAST of CmaCh02G015810 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G015810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17085.1	6.7e-09	56.67	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38384:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 14..63
None	No IPR available	PANTHER	PTHR38384	MEMBRANE LIPOPROTEIN-RELATED	coord: 14..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G015810.1	CmaCh02G015810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane