Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCAAGCTCTTTTTCTCTTCCATTTCTATGGCAAAAGTGTACCCTCAAACAGCGCAGTCGCCGTCGTCGTCGTCGTCTTCATCGCTTTGTTACGAAACAGAAACCTTCACGATTTGGATGAAATCTCTTATTTACCACACAAATGGCTGCACCGTCTACGATTCCAATGGCGACATCGTCTACAGAGTCGATAACTACAACAGAAAATGCCGTCGCGAAGTTTTTCTCATGGATCTCAGAGGCAACGTCCTCTTCACCATCAGAAAAATGGTGAGCCAAAAAATGGCGGTTTCTCTGATTTATTTCGTTCTGATTTCGATGCTAAATCCTTGAGTACCGTTCGATTAATTGTAGTTCTGGATTAATTTGTGCAGAAATTTTCGATTCTCGGAGGATGGGAGGGATATCGATGGATCGATTCGGAGAGAAGTACAAGCCCTAGCTTTCGAGTGAAGAAATTGTACAGATCAGGATCGAGGAATCAATCGGTCTGTGAAATTACTGTAGGATTTGAGAGGTTTTCGTTGGTGAAAATGGATGGAAAATTGGCTTTCAGAATAATGAACATCAATGGAGAAGTAGTTGCAGAGGTTAGTAGTGGAGTGTGTGGAAAATGAATCGAATCGAATCGAATCTCATTTCCTTTGGTTTTCTCGGCTGATTTTCCGTCGTGCCAAACAGATTCTAACAGTTTGAAATTGTTTTTGGTGTGTTTTTCAGGCGAAAAGAAAAGTTTCTTCGAATGGAATTCTATTGGGAGATGATGTGTTGAGTTTAAATGCAAATTCTCAGATTGAAAGATCTCTGGTTATGGCATTGGTTTCGGTTTATGGCTTAATCCGTCGCCAAATGTAAAATTATATACAAAATTTGGTTTTTATTTTATTTAATTTTATATTATTTTCCTCTGGCTCTTTAGAGGATTTCCCGATGCGTATACAACTTAAAGATTTTGGTTTCTAATATAGGTTTTTAGTTTCTATGTGAATGATTAATGTAGAGATTACAAAGGAAT
mRNA sequence
TTTCAAGCTCTTTTTCTCTTCCATTTCTATGGCAAAAGTGTACCCTCAAACAGCGCAGTCGCCGTCGTCGTCGTCGTCTTCATCGCTTTGTTACGAAACAGAAACCTTCACGATTTGGATGAAATCTCTTATTTACCACACAAATGGCTGCACCGTCTACGATTCCAATGGCGACATCGTCTACAGAGTCGATAACTACAACAGAAAATGCCGTCGCGAAGTTTTTCTCATGGATCTCAGAGGCAACGTCCTCTTCACCATCAGAAAAATGAAATTTTCGATTCTCGGAGGATGGGAGGGATATCGATGGATCGATTCGGAGAGAAGTACAAGCCCTAGCTTTCGAGTGAAGAAATTGTACAGATCAGGATCGAGGAATCAATCGGTCTGTGAAATTACTGTAGGATTTGAGAGGTTTTCGTTGGTGAAAATGGATGGAAAATTGGCTTTCAGAATAATGAACATCAATGGAGAAGTAGTTGCAGAGGCGAAAAGAAAAGTTTCTTCGAATGGAATTCTATTGGGAGATGATGTGTTGAGTTTAAATGCAAATTCTCAGATTGAAAGATCTCTGGTTATGGCATTGGTTTCGGTTTATGGCTTAATCCGTCGCCAAATGTAAAATTATATACAAAATTTGGTTTTTATTTTATTTAATTTTATATTATTTTCCTCTGGCTCTTTAGAGGATTTCCCGATGCGTATACAACTTAAAGATTTTGGTTTCTAATATAGGTTTTTAGTTTCTATGTGAATGATTAATGTAGAGATTACAAAGGAAT
Coding sequence (CDS)
ATGGCAAAAGTGTACCCTCAAACAGCGCAGTCGCCGTCGTCGTCGTCGTCTTCATCGCTTTGTTACGAAACAGAAACCTTCACGATTTGGATGAAATCTCTTATTTACCACACAAATGGCTGCACCGTCTACGATTCCAATGGCGACATCGTCTACAGAGTCGATAACTACAACAGAAAATGCCGTCGCGAAGTTTTTCTCATGGATCTCAGAGGCAACGTCCTCTTCACCATCAGAAAAATGAAATTTTCGATTCTCGGAGGATGGGAGGGATATCGATGGATCGATTCGGAGAGAAGTACAAGCCCTAGCTTTCGAGTGAAGAAATTGTACAGATCAGGATCGAGGAATCAATCGGTCTGTGAAATTACTGTAGGATTTGAGAGGTTTTCGTTGGTGAAAATGGATGGAAAATTGGCTTTCAGAATAATGAACATCAATGGAGAAGTAGTTGCAGAGGCGAAAAGAAAAGTTTCTTCGAATGGAATTCTATTGGGAGATGATGTGTTGAGTTTAAATGCAAATTCTCAGATTGAAAGATCTCTGGTTATGGCATTGGTTTCGGTTTATGGCTTAATCCGTCGCCAAATGTAA
Protein sequence
MAKVYPQTAQSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVDNYNRKCRREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSGSRNQSVCEITVGFERFSLVKMDGKLAFRIMNINGEVVAEAKRKVSSNGILLGDDVLSLNANSQIERSLVMALVSVYGLIRRQM
Homology
BLAST of CmaCh02G014670 vs. ExPASy Swiss-Prot
Match:
Q9SH27 (Protein LURP-one-related 4 OS=Arabidopsis thaliana OX=3702 GN=At1g63410 PE=3 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 1.9e-40
Identity = 93/194 (47.94%), Postives = 126/194 (64.95%), Query Frame = 0
Query: 1 MAKVYPQTAQSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVDNYNRK 60
MA+V+PQ A SS + E ETFT+WMKSL+Y TNG TVY+SNG+I YRV+NY+ K
Sbjct: 1 MARVFPQAA-----ISSPYMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-K 60
Query: 61 CRREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSGSRNQSV 120
C EV +MDL GN+LFTIRK K + G W YR S ST ++ RS R+
Sbjct: 61 CSNEVHIMDLHGNILFTIRKKKLWLFGSWYVYRECGSFTSTEEVKPCARIKRSSIRDGDW 120
Query: 121 CEITVGFERFSLVKMDGKLAFRIMNINGEVVAEAKRKVSSNGILLGDDVLSLNANSQIER 180
E F +++ D K AF+I++I+G ++A+ K K SSNGI LG+DVL+L +++
Sbjct: 121 EVRDETNEVFWILRFDPKFAFQIIDIHGNIIAQVKPKQSSNGITLGEDVLTLEVKPRVDH 180
Query: 181 SLVMALVSVYGLIR 195
SLV+ LV+VYGLI+
Sbjct: 181 SLVVTLVTVYGLIK 188
BLAST of CmaCh02G014670 vs. ExPASy Swiss-Prot
Match:
Q9LUM1 (Protein LURP-one-related 11 OS=Arabidopsis thaliana OX=3702 GN=At3g14260 PE=2 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 88/206 (42.72%), Postives = 128/206 (62.14%), Query Frame = 0
Query: 1 MAKVYPQTAQSPSSSSSSS--LCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVDNYN 60
M K++P S + +SS L E E+FTIWMKSL+++TNGCTV+DS G+I+YRVDNYN
Sbjct: 23 MVKIHPDLTTSGAGEETSSPYLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYN 82
Query: 61 RKCRREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPS---FRVK-KLYRSG 120
K REV+LMDL G+VLFT+R+ KF + WEGYR + ++ FRVK +++
Sbjct: 83 SKSCREVYLMDLSGHVLFTLRRQKFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVP 142
Query: 121 SRNQSVC-EITVGFER------FSLVKMDGKLAFRIMNINGEVVAEAKRKVSSNGILLGD 180
+++ S + G R + +V LA I + G+++AE KRK S NG+ LGD
Sbjct: 143 NKDSSSSYRVNAGSCRNDEQYCYKMVTRGSSLA--IEDNCGKLLAEVKRKQSINGLKLGD 202
Query: 181 DVLSLNANSQIERSLVMALVSVYGLI 194
DVL++ SQ++ S ++ LV + LI
Sbjct: 203 DVLTMMVESQVDHSFIIGLVLAHSLI 226
BLAST of CmaCh02G014670 vs. ExPASy Swiss-Prot
Match:
Q8LG32 (Protein LURP-one-related 2 OS=Arabidopsis thaliana OX=3702 GN=At1g53870 PE=2 SV=2)
HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 78/210 (37.14%), Postives = 115/210 (54.76%), Query Frame = 0
Query: 1 MAKVYPQTA-----QSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVD 60
M K+YP A L E E FTIWMKSL++++ GCTV+DS G+++YRVD
Sbjct: 13 MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72
Query: 61 NYNRKC-RREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSG 120
NY+ K EV+ MDL G +LFT+R+ K WEGY ST FR++K+++
Sbjct: 73 NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY------NSTGTRFRLRKIFKIL 132
Query: 121 SRNQSVCEITVGFERFSLVKMDGKLAFRIMNI---------NGEVVAEAKRKVSS-NGIL 180
R S V R +V D + ++I+N +G ++AE K K+S +G+
Sbjct: 133 PRESSSSYKVVMGSR--IVDGDQQSCYKIVNRGSVFAIKDGSGRLMAEVKNKLSDISGLD 192
Query: 181 LGDDVLSLNANSQIERSLVMALVSVYGLIR 195
LGDDVL++ Q++ SL+M +V Y L +
Sbjct: 193 LGDDVLTMMVEPQLDHSLIMGIVIAYKLTK 214
BLAST of CmaCh02G014670 vs. ExPASy Swiss-Prot
Match:
Q67XV7 (Protein LURP-one-related 3 OS=Arabidopsis thaliana OX=3702 GN=At1g53890 PE=2 SV=2)
HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 78/210 (37.14%), Postives = 115/210 (54.76%), Query Frame = 0
Query: 1 MAKVYPQTA-----QSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVD 60
M K+YP A L E E FTIWMKSL++++ GCTV+DS G+++YRVD
Sbjct: 13 MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72
Query: 61 NYNRKC-RREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSG 120
NY+ K EV+ MDL G +LFT+R+ K WEGY ST FR++K+++
Sbjct: 73 NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY------NSTGTRFRLRKIFKIL 132
Query: 121 SRNQSVCEITVGFERFSLVKMDGKLAFRIMNI---------NGEVVAEAKRKVSS-NGIL 180
R S V R +V D + ++I+N +G ++AE K K+S +G+
Sbjct: 133 PRESSSSYKVVMGSR--IVDGDQQSCYKIVNRGSVFAIKDGSGRLMAEVKNKLSDISGLD 192
Query: 181 LGDDVLSLNANSQIERSLVMALVSVYGLIR 195
LGDDVL++ Q++ SL+M +V Y L +
Sbjct: 193 LGDDVLTMMVEPQLDHSLIMGIVIAYKLTK 214
BLAST of CmaCh02G014670 vs. ExPASy Swiss-Prot
Match:
Q9ZVI6 (Protein LURP-one-related 8 OS=Arabidopsis thaliana OX=3702 GN=At2g38640 PE=2 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 64/197 (32.49%), Postives = 98/197 (49.75%), Query Frame = 0
Query: 1 MAKVYPQTAQSPSSSSSSSLC--YETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVDNYN 60
M KV+P+ S+ SLC T+W KSL+++ +G TVY++NG++V+RVDNY
Sbjct: 1 MTKVHPKF----PSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYM 60
Query: 61 RKCRREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSGSRNQ 120
R + LMD G L +IR+ K S+ W Y D E P F +K S +
Sbjct: 61 NCPRDNIVLMDASGFPLLSIRRKKLSLGDCWMVY---DGETERDPIFTARKNVSIISNRK 120
Query: 121 SVCEITVGFERFSLVKMDGKLAFRIMNI-----NGEVVAEAKRKVS-SNGILLGDDVLSL 180
S+ ++ ++ L +++G R I N + AE KRK + G+ G DV L
Sbjct: 121 SLAWVSA--KKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKL 180
Query: 181 NANSQIERSLVMALVSV 190
S++E + MAL +
Sbjct: 181 IVESEMEPRVAMALTII 188
BLAST of CmaCh02G014670 vs. TAIR 10
Match:
AT1G63410.1 (Protein of unknown function (DUF567) )
HSP 1 Score: 160.2 bits (404), Expect = 1.7e-39
Identity = 89/195 (45.64%), Postives = 125/195 (64.10%), Query Frame = 0
Query: 1 MAKVYPQTAQSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVDNYNRK 60
MA+V+PQ A SS + E ETFT+WMKSL+Y TNG TVY+SNG+I YRV+NY+ K
Sbjct: 1 MARVFPQAA-----ISSPYMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-K 60
Query: 61 CRREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSGSRNQSV 120
C EV +MDL GN+LFTIRK K + G W YR S ST ++ RS R+
Sbjct: 61 CSNEVHIMDLHGNILFTIRKKKLWLFGSWYVYRECGSFTSTEEVKPCARIKRSSIRDGDW 120
Query: 121 CEITVGFERFSLVKMDGKLAFRIMNINGEVVAEAKRKVSSNGILLGDDVLSLNANSQIER 180
E F +++ D K AF+I++I+G ++A+ K K SSNGI LG+DVL+L +++
Sbjct: 121 EVRDETNEVFWILRFDPKFAFQIIDIHGNIIAQVKPKQSSNGITLGEDVLTLEVKPRVDH 180
Query: 181 SLVMALVSVYGLIRR 196
SLV+ LV++ G +++
Sbjct: 181 SLVVTLVTIDGEVKQ 189
BLAST of CmaCh02G014670 vs. TAIR 10
Match:
AT3G14260.1 (Protein of unknown function (DUF567) )
HSP 1 Score: 147.1 bits (370), Expect = 1.5e-35
Identity = 88/206 (42.72%), Postives = 128/206 (62.14%), Query Frame = 0
Query: 1 MAKVYPQTAQSPSSSSSSS--LCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVDNYN 60
M K++P S + +SS L E E+FTIWMKSL+++TNGCTV+DS G+I+YRVDNYN
Sbjct: 23 MVKIHPDLTTSGAGEETSSPYLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYN 82
Query: 61 RKCRREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPS---FRVK-KLYRSG 120
K REV+LMDL G+VLFT+R+ KF + WEGYR + ++ FRVK +++
Sbjct: 83 SKSCREVYLMDLSGHVLFTLRRQKFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVP 142
Query: 121 SRNQSVC-EITVGFER------FSLVKMDGKLAFRIMNINGEVVAEAKRKVSSNGILLGD 180
+++ S + G R + +V LA I + G+++AE KRK S NG+ LGD
Sbjct: 143 NKDSSSSYRVNAGSCRNDEQYCYKMVTRGSSLA--IEDNCGKLLAEVKRKQSINGLKLGD 202
Query: 181 DVLSLNANSQIERSLVMALVSVYGLI 194
DVL++ SQ++ S ++ LV + LI
Sbjct: 203 DVLTMMVESQVDHSFIIGLVLAHSLI 226
BLAST of CmaCh02G014670 vs. TAIR 10
Match:
AT1G53890.1 (Protein of unknown function (DUF567) )
HSP 1 Score: 124.4 bits (311), Expect = 1.0e-28
Identity = 78/210 (37.14%), Postives = 115/210 (54.76%), Query Frame = 0
Query: 1 MAKVYPQTA-----QSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVD 60
M K+YP A L E E FTIWMKSL++++ GCTV+DS G+++YRVD
Sbjct: 13 MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72
Query: 61 NYNRKC-RREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSG 120
NY+ K EV+ MDL G +LFT+R+ K WEGY ST FR++K+++
Sbjct: 73 NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY------NSTGTRFRLRKIFKIL 132
Query: 121 SRNQSVCEITVGFERFSLVKMDGKLAFRIMNI---------NGEVVAEAKRKVSS-NGIL 180
R S V R +V D + ++I+N +G ++AE K K+S +G+
Sbjct: 133 PRESSSSYKVVMGSR--IVDGDQQSCYKIVNRGSVFAIKDGSGRLMAEVKNKLSDISGLD 192
Query: 181 LGDDVLSLNANSQIERSLVMALVSVYGLIR 195
LGDDVL++ Q++ SL+M +V Y L +
Sbjct: 193 LGDDVLTMMVEPQLDHSLIMGIVIAYKLTK 214
BLAST of CmaCh02G014670 vs. TAIR 10
Match:
AT1G53870.1 (Protein of unknown function (DUF567) )
HSP 1 Score: 124.4 bits (311), Expect = 1.0e-28
Identity = 78/210 (37.14%), Postives = 115/210 (54.76%), Query Frame = 0
Query: 1 MAKVYPQTA-----QSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVD 60
M K+YP A L E E FTIWMKSL++++ GCTV+DS G+++YRVD
Sbjct: 13 MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72
Query: 61 NYNRKC-RREVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSG 120
NY+ K EV+ MDL G +LFT+R+ K WEGY ST FR++K+++
Sbjct: 73 NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY------NSTGTRFRLRKIFKIL 132
Query: 121 SRNQSVCEITVGFERFSLVKMDGKLAFRIMNI---------NGEVVAEAKRKVSS-NGIL 180
R S V R +V D + ++I+N +G ++AE K K+S +G+
Sbjct: 133 PRESSSSYKVVMGSR--IVDGDQQSCYKIVNRGSVFAIKDGSGRLMAEVKNKLSDISGLD 192
Query: 181 LGDDVLSLNANSQIERSLVMALVSVYGLIR 195
LGDDVL++ Q++ SL+M +V Y L +
Sbjct: 193 LGDDVLTMMVEPQLDHSLIMGIVIAYKLTK 214
BLAST of CmaCh02G014670 vs. TAIR 10
Match:
AT1G53880.1 (Eukaryotic translation initiation factor 2B (eIF-2B) family protein )
HSP 1 Score: 115.9 bits (289), Expect = 3.6e-26
Identity = 66/190 (34.74%), Postives = 104/190 (54.74%), Query Frame = 0
Query: 3 KVYPQTAQSPSSSSSSSLCYETETFTIWMKSLIYHTNGCTVYDSNGDIVYRVDNYNRKCR 62
K +P +S L E E+FTIWM+SL++H+ GCTV+DS G+++YRVDNYN K
Sbjct: 8 KAFPVDFSVGEGKTSPYLTTEKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNYNSKSC 67
Query: 63 REVFLMDLRGNVLFTIRKMKFSILGGWEGYRWIDSERSTSPSFRVKKLYRSGSRNQSVCE 122
EV+LMDL G +LFT+R+ K + W+GY + +F++ S S +
Sbjct: 68 SEVYLMDLYGKILFTLRQKKLGLFKSWKGYNSTGTRFQLRKNFKILPKGSSSSYKVVMGS 127
Query: 123 ITVGFERFSLVK-MDGKLAFRIMNINGEVVAEAKRKVSS-NGILLGDDVLSLNANSQIER 182
V + S K + K F I + +G ++AE K+K S+ + LG DVL++ Q+E
Sbjct: 128 RIVDGDHQSCYKIVKRKSVFTIEDGSGRLLAEVKKKQSNIKSLDLGKDVLTMMVEPQLET 187
Query: 183 SLVMALVSVY 191
+ + ++
Sbjct: 188 EIFEEFIKMW 197
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SH27 | 1.9e-40 | 47.94 | Protein LURP-one-related 4 OS=Arabidopsis thaliana OX=3702 GN=At1g63410 PE=3 SV=... | [more] |
Q9LUM1 | 2.1e-34 | 42.72 | Protein LURP-one-related 11 OS=Arabidopsis thaliana OX=3702 GN=At3g14260 PE=2 SV... | [more] |
Q8LG32 | 1.4e-27 | 37.14 | Protein LURP-one-related 2 OS=Arabidopsis thaliana OX=3702 GN=At1g53870 PE=2 SV=... | [more] |
Q67XV7 | 1.4e-27 | 37.14 | Protein LURP-one-related 3 OS=Arabidopsis thaliana OX=3702 GN=At1g53890 PE=2 SV=... | [more] |
Q9ZVI6 | 1.6e-15 | 32.49 | Protein LURP-one-related 8 OS=Arabidopsis thaliana OX=3702 GN=At2g38640 PE=2 SV=... | [more] |