CmaCh02G013910 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G013910
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSNF1-related protein kinase regulatory subunit beta-3-like
LocationCma_Chr02: 8082997 .. 8083703 (-)
RNA-Seq ExpressionCmaCh02G013910
SyntenyCmaCh02G013910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACCCTTTCCCTGAAGATAGTGTAAGCTGCTAATCCTAGTTGTGTTCATCTTCTAATTACACGAAATGGGGTTTTAAAACTTGAATCCTTTCTACAGGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGATGATGCACGCGATCCACCACCCGTCCCACCTCATTTGCAGCACACCTTACTCAGTCACCCAGCAGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCGCGCCTTAGTTATGCATATACATCTAAATCATTCAATAGAACTAGTCCATCGGTAGAAATTGTTTATGAAGTTAGAGCGGAAGCATTTAACTTCTTCACCAAGTAAATGATTGTTGATGGGTAGATATTGTTCTTGCATTTTTTGAACTGTTAAAAGATGCAAATACTTCTTATTTTCTTAGCTCGAAGTTTAGACTTTAGAGTTCGGTTTGTAGGATGTGTTTATTAATTTAGCCTTTGGATTACATTATATTCGAGGGTTCAATCTATGACCCCATTAACACAA

mRNA sequence

ATGAACAACCCTTTCCCTGAAGATAGTGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGATGATGCACGCGATCCACCACCCGTCCCACCTCATTTGCAGCACACCTTACTCAGTCACCCAGCAGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCGCGCCTTAGTTATGCATATACATCTAAATCATTCAATAGAACTAGTCCATCGGTAGAAATTGTTTATGAAGTTAGAGCGGAAGCATTTAACTTCTTCACCAAGTAAATGATTGTTGATGGGTAGATATTGTTCTTGCATTTTTTGAACTGTTAAAAGATGCAAATACTTCTTATTTTCTTAGCTCGAAGTTTAGACTTTAGAGTTCGGTTTGTAGGATGTGTTTATTAATTTAGCCTTTGGATTACATTATATTCGAGGGTTCAATCTATGACCCCATTAACACAA

Coding sequence (CDS)

ATGAACAACCCTTTCCCTGAAGATAGTGATCAGACCACCGTAGTGGGTTTTGAAGTTCCAAAATCACCGGATTCAACCTATAACAATGTATACCTTGGAAGCGAAGATGATGCACGCGATCCACCACCCGTCCCACCTCATTTGCAGCACACCTTACTCAGTCACCCAGCAGGCCGAGATGCTGGTGGAACTCTTCCTTTGCCACAGAATGTGGTTCTCAACCATCTTTTTATCGAAAACCGGGAGACTCCACGTTCCGTTGTGGCTCTTGGATTCACTCATCGTTTTCATTCAAAATATGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCGCGCCTTAG

Protein sequence

MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSAP
Homology
[Close]
BLAST of CmaCh02G013910 vs. ExPASy Swiss-Prot
Match: Q9ZUU8 (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-37
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MN+  P+D + TTVVGFEVP SP S+YNNVY  +ED+ RDPP VPPHLQH+LL +    +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNVVLNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]
BLAST of CmaCh02G013910 vs. ExPASy Swiss-Prot
Match: Q9SCY5 (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-24
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 185 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 244

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 245 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

[Close]
BLAST of CmaCh02G013910 vs. ExPASy Swiss-Prot
Match: Q84VQ1 (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           ++N  PE+ +  ++V FE P SPD +Y      +ED A++P  VPP L  TLL      +
Sbjct: 178 VHNFVPENPE--SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTE 237

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
                  PQ+VVLNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 238 ETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

[Close]
BLAST of CmaCh02G013910 vs. ExPASy Swiss-Prot
Match: Q9QZH4 (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 35/95 (36.84%), Postives = 49/95 (51.58%), Query Frame = 0 

Query: 18  EVPKSPDSTYNN--VYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAG-GTLPLPQNVVLN 77
           ++  SP   Y        SE+  + PP +PPHL   +L+           LP P +V+LN
Sbjct: 179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+     T  SV+ L  THR+  KYVT +LYKP+
Sbjct: 239 HLYA--LSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]
BLAST of CmaCh02G013910 vs. ExPASy Swiss-Prot
Match: Q9Y478 (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-08
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 18  EVPKSPDSTYNN--VYLGSEDDARDPPPVPPHLQHTLLSHPAGRDAG-GTLPLPQNVVLN 77
           E+  SP   Y+        E+  R PP +PPHL   +L+   G       LP P +V+LN
Sbjct: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+  + +    V+ L  THR+  KYVT +LYKP+
Sbjct: 238 HLYALSIKD--GVMVLSATHRYKKKYVTTLLYKPI 270

[Close]
BLAST of CmaCh02G013910 vs. TAIR 10
Match: AT2G28060.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-38
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           MN+  P+D + TTVVGFEVP SP S+YNNVY  +ED+ RDPP VPPHLQH+LL +    +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNVVLNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]
BLAST of CmaCh02G013910 vs. TAIR 10
Match: AT4G16360.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 155 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 214

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 215 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 259

[Close]
BLAST of CmaCh02G013910 vs. TAIR 10
Match: AT4G16360.2 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 154 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 213

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 214 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 258

[Close]
BLAST of CmaCh02G013910 vs. TAIR 10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-26
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 6   PEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGR-DAGGT 65
           PED    ++ GFE P+SP+++Y+N+ LG+ED +++PP VPPHLQ TLL+ PA   D    
Sbjct: 157 PEDIQ--SISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSP 216

Query: 66  LPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LP PQ+V+LNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 217 LPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261

[Close]
BLAST of CmaCh02G013910 vs. TAIR 10
Match: AT5G21170.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-21
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 0 

Query: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60
           ++N  PE+ +  ++V FE P SPD +Y      +ED A++P  VPP L  TLL      +
Sbjct: 178 VHNFVPENPE--SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTE 237

Query: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
                  PQ+VVLNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 238 ETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

The following BLAST results are available for this feature:
BLAST of CmaCh02G013910 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZUU85.9e-3764.35SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX... [more]
Q9SCY51.1e-2454.21SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX... [more]
Q84VQ12.9e-2048.65SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX... [more]
Q9QZH42.0e-0836.845'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=... [more]
Q9Y4785.7e-0836.845'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1... [more]
BLAST of CmaCh02G013910 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G28060.14.2e-3864.355'-AMP-activated protein kinase beta-2 subunit protein [more]
AT4G16360.18.1e-2654.215'-AMP-activated protein kinase beta-2 subunit protein [more]
AT4G16360.28.1e-2654.215'-AMP-activated protein kinase beta-2 subunit protein [more]
AT4G16360.38.1e-2654.215'-AMP-activated protein kinase beta-2 subunit protein [more]
AT5G21170.12.1e-2148.655'-AMP-activated protein kinase beta-2 subunit protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006828Association with the SNF1 complex (ASC) domainSMARTSM01010AMPKBI_2coord: 20..109
e-value: 8.8E-29
score: 111.6
IPR006828Association with the SNF1 complex (ASC) domainPFAMPF04739AMPKBIcoord: 39..108
e-value: 8.7E-21
score: 74.0
NoneNo IPR availableGENE3D6.20.250.60coord: 13..109
e-value: 7.5E-24
score: 85.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
IPR043554SNF1-related protein kinase regulatory subunit betaPANTHERPTHR46316SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1coord: 1..115
IPR030067SNF1-related protein kinase regulatory subunit beta-3PANTHERPTHR46316:SF5SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3coord: 1..115
IPR037256ASC domain superfamilySUPERFAMILY160219AMPKBI-likecoord: 12..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G013910.1CmaCh02G013910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043562 cellular response to nitrogen levels
biological_process GO:0016310 phosphorylation
biological_process GO:0009744 response to sucrose
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016301 kinase activity
molecular_function GO:0005515 protein binding