CmaCh02G013820 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G013820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function (DUF1635)
LocationCma_Chr02: 8040365 .. 8041635 (-)
RNA-Seq ExpressionCmaCh02G013820
SyntenyCmaCh02G013820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGATACTCACTTTCTCTCTCTCTGAAACTGTTATGGACAACCAATGCAGCGCTTTTCTGGGTTGGGCTTACTTCTTCCAAGGAATGGTAAAAAAGTTCTTTCTTTTCATCTATATTTCCAGAATTTGGCTTCTGGGTTTGTTTCCATTTCTGATTTCTTTGTTGGGTTTGCGTGCTTTCAAACAGAACATTGAAGAATTGAGGCATTCGCTTTTTTGTGCAACTCTTGAGCTGGAACAGACGAGGGCTGCAGTTCATGAGGAGCTAAGAAAGAGAGATGAACAGATAATTAATCTCAAAGAACTTTTCAGCAGAGCCAATCGAGAGAGGGAGGAAGCAAATGAAAAGATCCAGAAGTTACTCATTGAGAAGCTTTTCCTTCAGCACCGAACAGGTCAACATTCAGGAATTTCCAGTGTTGAAGATGAACAAAGGAAAGGAATTGATTCCAACAATGGCTTCTCCTCGTCGGATTGCGAAGAAAGCATTGTATCGTCTCCTGCCATTGATCCAATTCCACCACCACAGTTCGCTACATCTCTGCCGCTACAAGCAACGTCGCAGGCCGCGGTCGAATTGGTTTCAGAGAAGCTATTGCCTGAAAAAGGCAAGCTTTTGGAAGCAGTGATGAAAGCAGGCCCTCTGCTTCAGACTCTGCTTGTTGCCGGACCTCTTCCTGAGTGGAGACACCCACCTCCACCACTTGAACCCTTCGAGATCCCACCAGTGACAGTTCCTTCAACGCCACCACCGCAGCTCCTCCGGGATTCTCCAGTGACATTCAGTCGTAGCAGCAACATTACCAATTGTGGAAGCAGAAAAAGAGCTTTCTTGGAAGGCTCTGATTCTCCAACCGAGACAAAGTGTCGAAGGCTTGCTCCTCGCTGACCACTACAAAAACCAGAGAGCAGCAAAACACAATCATAGTATAGTATTTCTTTTTCATCCTCCGTCTGAGAAACGGGTCGAGTTTTTCCAGAATTGTTTGTCATATAAGATGCAATTCCAATTCTGAGATTCATCGTGTTTGATAGCTTGTCTTAGATCACAGCAAAAACATAATAACTAACTGATCAAACACTCAACACAATAGTTTACAGACTTCCATACCTCCAAAATTTCCGTCATTTTGTCACCATCATGTTGTATTTCAAGTTCAATCCGGTGTCTGCCTAATTCATAATATATCAAAATACAAATCAGAACATTAGGCAGGGCGAAGAACTGTACCATCAAAAGCTTCATCCAAATATGATCTTTGTGTTTCCATA

mRNA sequence

CTGATACTCACTTTCTCTCTCTCTGAAACTGTTATGGACAACCAATGCAGCGCTTTTCTGGGTTGGGCTTACTTCTTCCAAGGAATGAACATTGAAGAATTGAGGCATTCGCTTTTTTGTGCAACTCTTGAGCTGGAACAGACGAGGGCTGCAGTTCATGAGGAGCTAAGAAAGAGAGATGAACAGATAATTAATCTCAAAGAACTTTTCAGCAGAGCCAATCGAGAGAGGGAGGAAGCAAATGAAAAGATCCAGAAGTTACTCATTGAGAAGCTTTTCCTTCAGCACCGAACAGGTCAACATTCAGGAATTTCCAGTGTTGAAGATGAACAAAGGAAAGGAATTGATTCCAACAATGGCTTCTCCTCGTCGGATTGCGAAGAAAGCATTGTATCGTCTCCTGCCATTGATCCAATTCCACCACCACAGTTCGCTACATCTCTGCCGCTACAAGCAACGTCGCAGGCCGCGGTCGAATTGGTTTCAGAGAAGCTATTGCCTGAAAAAGGCAAGCTTTTGGAAGCAGTGATGAAAGCAGGCCCTCTGCTTCAGACTCTGCTTGTTGCCGGACCTCTTCCTGAGTGGAGACACCCACCTCCACCACTTGAACCCTTCGAGATCCCACCAGTGACAGTTCCTTCAACGCCACCACCGCAGCTCCTCCGGGATTCTCCAGTGACATTCAGTCGTAGCAGCAACATTACCAATTGTGGAAGCAGAAAAAGAGCTTTCTTGGAAGGCTCTGATTCTCCAACCGAGACAAAGTGTCGAAGGCTTGCTCCTCGCTGACCACTACAAAAACCAGAGAGCAGCAAAACACAATCATAGTATAGTATTTCTTTTTCATCCTCCGTCTGAGAAACGGGTCGAGTTTTTCCAGAATTGTTTGTCATATAAGATGCAATTCCAATTCTGAGATTCATCGTGTTTGATAGCTTGTCTTAGATCACAGCAAAAACATAATAACTAACTGATCAAACACTCAACACAATAGTTTACAGACTTCCATACCTCCAAAATTTCCGTCATTTTGTCACCATCATGTTGTATTTCAAGTTCAATCCGGTGTCTGCCTAATTCATAATATATCAAAATACAAATCAGAACATTAGGCAGGGCGAAGAACTGTACCATCAAAAGCTTCATCCAAATATGATCTTTGTGTTTCCATA

Coding sequence (CDS)

ATGGACAACCAATGCAGCGCTTTTCTGGGTTGGGCTTACTTCTTCCAAGGAATGAACATTGAAGAATTGAGGCATTCGCTTTTTTGTGCAACTCTTGAGCTGGAACAGACGAGGGCTGCAGTTCATGAGGAGCTAAGAAAGAGAGATGAACAGATAATTAATCTCAAAGAACTTTTCAGCAGAGCCAATCGAGAGAGGGAGGAAGCAAATGAAAAGATCCAGAAGTTACTCATTGAGAAGCTTTTCCTTCAGCACCGAACAGGTCAACATTCAGGAATTTCCAGTGTTGAAGATGAACAAAGGAAAGGAATTGATTCCAACAATGGCTTCTCCTCGTCGGATTGCGAAGAAAGCATTGTATCGTCTCCTGCCATTGATCCAATTCCACCACCACAGTTCGCTACATCTCTGCCGCTACAAGCAACGTCGCAGGCCGCGGTCGAATTGGTTTCAGAGAAGCTATTGCCTGAAAAAGGCAAGCTTTTGGAAGCAGTGATGAAAGCAGGCCCTCTGCTTCAGACTCTGCTTGTTGCCGGACCTCTTCCTGAGTGGAGACACCCACCTCCACCACTTGAACCCTTCGAGATCCCACCAGTGACAGTTCCTTCAACGCCACCACCGCAGCTCCTCCGGGATTCTCCAGTGACATTCAGTCGTAGCAGCAACATTACCAATTGTGGAAGCAGAAAAAGAGCTTTCTTGGAAGGCTCTGATTCTCCAACCGAGACAAAGTGTCGAAGGCTTGCTCCTCGCTGA

Protein sequence

MDNQCSAFLGWAYFFQGMNIEELRHSLFCATLELEQTRAAVHEELRKRDEQIINLKELFSRANREREEANEKIQKLLIEKLFLQHRTGQHSGISSVEDEQRKGIDSNNGFSSSDCEESIVSSPAIDPIPPPQFATSLPLQATSQAAVELVSEKLLPEKGKLLEAVMKAGPLLQTLLVAGPLPEWRHPPPPLEPFEIPPVTVPSTPPPQLLRDSPVTFSRSSNITNCGSRKRAFLEGSDSPTETKCRRLAPR
Homology
BLAST of CmaCh02G013820 vs. TAIR 10
Match: AT5G22930.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 189.1 bits (479), Expect = 4.3e-48
Identity = 121/246 (49.19%), Postives = 155/246 (63.01%), Query Frame = 0

Query: 1   MDNQCSAFLGWAYFFQGMNIEELRHSLFCATLELEQTRAAVHEELRKRDEQIINLKELFS 60
           MDNQ +A LGW Y+      EE+R SL   TLEL+QT+   +EE+RKRDEQ+I+LK++ +
Sbjct: 1   MDNQSNALLGWPYYSHAKTTEEIRQSLLYTTLELDQTKMFAYEEIRKRDEQLIHLKDILT 60

Query: 61  RANREREEANEKIQKLLIEKLFLQ---HRTGQHSGISSVEDE--QRKGIDSNNGFSSSDC 120
           +  +ER+EA EK Q+L+ +   LQ   H T   SG SS+EDE  Q + + SN  FSSSDC
Sbjct: 61  KTIKERDEALEKCQRLMFDSHSLQQQKHMTPPLSGASSIEDEQVQPQQLRSNKSFSSSDC 120

Query: 121 EESIVSSPAIDPIPPPQFATSLPLQATSQAAVELVSEKLLPEKGKLLEAVMKAGPLLQTL 180
           EESI+S       PPP       +  T      L+ +K LPEKGKLL+AV+KAGPLLQTL
Sbjct: 121 EESIMSPTDHIMNPPP--CQLEEVSGTEIIMDPLLQDKPLPEKGKLLQAVIKAGPLLQTL 180

Query: 181 LVAGPLPEWRHPPPPLEPFEIPPVTVPSTPPPQLLRDSPVTFSRSSNITNCG--SRKRAF 240
           L+AGPLP+WRHPPPPL+ FEIPPVTV            P+  +       CG  +RKR F
Sbjct: 181 LLAGPLPQWRHPPPPLKSFEIPPVTV----------QCPIVNN------GCGKFNRKRVF 228

BLAST of CmaCh02G013820 vs. TAIR 10
Match: AT3G44940.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-45
Identity = 119/263 (45.25%), Postives = 161/263 (61.22%), Query Frame = 0

Query: 3   NQCSAFLGWAYFFQGMNIEELRHSLFCATLELEQTRAAVHEELRKRDEQIINLKELFSRA 62
           +Q ++ L W YF  G   EELR +L   T+ELEQT+   HEELRKRDEQ+I+L+++ ++ 
Sbjct: 2   DQSNSLLSWTYFSHGKTTEELRQTLVYTTMELEQTKLVAHEELRKRDEQLIHLEDVLTKT 61

Query: 63  NREREEANEKIQKLLIEKLFLQHRTGQH------------SGISS-VEDE----QRKGID 122
            +ER+EA EK   LL+  L LQ +  Q+            SG SS +EDE    Q+  ++
Sbjct: 62  LKERDEALEKYNHLLLNNLLLQQKQQQNQNQKQELVTPPLSGASSIIEDEQVQPQQPQLN 121

Query: 123 SNNGFSSSDCEESIVSSPAIDPIPPPQFATSLPLQATSQAAVELVSEKLLPEKGKLLEAV 182
           SN  FSSSD EESI+S   IDP+   Q    + +      A  L+ +K LPEKGKLL+AV
Sbjct: 122 SNKSFSSSDTEESIMSPSVIDPVTMNQ---QIEVSGDEMLAT-LLPDKPLPEKGKLLQAV 181

Query: 183 MKAGPLLQTLLVAGPLPEWRHPPPPLEPFEIPPVTVPSTPPPQLLRDSPVTFSRSSNITN 242
           +KAGPLLQTLL+AGPLP+WRHPPPPLE  EIPPVT+P    PQ            +N   
Sbjct: 182 IKAGPLLQTLLLAGPLPQWRHPPPPLETSEIPPVTIPL---PQF----------QNNGCG 241

Query: 243 CGSRKRAFLEGSDSPTETKCRRL 249
             ++KRAF    ++ +ETK +++
Sbjct: 242 NSNKKRAFSISDETYSETKYQKV 247

BLAST of CmaCh02G013820 vs. TAIR 10
Match: AT2G28140.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 148.3 bits (373), Expect = 8.3e-36
Identity = 111/250 (44.40%), Postives = 143/250 (57.20%), Query Frame = 0

Query: 4   QCSAFLGWAYFFQG--MNIEELRHSLFCATLELEQTRAAVHEELRKRDEQIINLKELFSR 63
           Q +  L W++  Q     IEELRHSL   T+ELEQTR    EEL  +D+QI+ LK+L ++
Sbjct: 5   QQNYLLSWSHQNQCGIKTIEELRHSLLHTTMELEQTRMVASEELIAKDDQIMQLKDLLNK 64

Query: 64  ANREREEANEKIQKLLIEKLF-LQHRTGQHSGISSVEDEQRKGIDSNNGFSSSDCEESIV 123
           A +E++EA E+ +++L+++ F LQH+T         ++EQ   I   NGF SSD EESIV
Sbjct: 65  AIKEKDEAQERYKRILLDQNFLLQHQT---------DEEQDPNI---NGFHSSDGEESIV 124

Query: 124 SSPAIDPIPPPQFATSLPLQATSQAAVELVSEKLLPEKGKLLEAVMKAGPLLQTLLVAGP 183
           SS      PP +     P             E  LPEKGKLL+AV+KAGPLLQTLL+AG 
Sbjct: 125 SSFE----PPVEIELDFP-------------EMTLPEKGKLLKAVVKAGPLLQTLLLAGQ 184

Query: 184 LPEWRHPPPPLEPFEIPPVTVPSTPPPQLLRDSPVTFSRSSNITNCGSRKRAFLEGSDSP 243
           LP+WRHPPP LE FEIPPV +    P  L +DS            CG+         DS 
Sbjct: 185 LPQWRHPPPQLESFEIPPVIIAEGSP--LSQDS------------CGNNLNRKRVHCDSK 211

Query: 244 TETKCRRLAP 251
            ETK +RL P
Sbjct: 245 RETKYQRLLP 211

BLAST of CmaCh02G013820 vs. TAIR 10
Match: AT2G28690.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19
Identity = 77/238 (32.35%), Postives = 121/238 (50.84%), Query Frame = 0

Query: 9   LGWAYFFQGMNIEELRHSLFCATLELEQTRAAVHEELRKRDEQIINLKELFSRANREREE 68
           LG  +F+Q  +++ELR  L  ++ ELE  +A  +EE +   E++ NL  L   A +ER+E
Sbjct: 4   LGSIWFYQ-ESMDELRQKLQYSSFELEAVKAKANEETKLHQEEVKNLLHLLKLARQERDE 63

Query: 69  ANEKIQKLLIEKLFLQHRTGQHSGISSVEDEQRKGIDSNNGFSSSDCEESIVSSPAIDPI 128
           A +++QKLL  K         +S I+         +DS   F      E    +   +PI
Sbjct: 64  AKDQLQKLLTIK--------TNSSITESNSHGSSPVDS--FFEPVSSSEFSNFNMVPEPI 123

Query: 129 PPPQFATSLPLQATSQAAV--------ELVSEKLLPEKGKLLEAVMKAGPLLQTLLVAGP 188
              +F     L   +   +        E++  K LPEKGKLL+ VM++GPLLQTLLVAGP
Sbjct: 124 NQVKFKNRQQLVNRNLKKIDPVDALMDEIIKGKALPEKGKLLQTVMESGPLLQTLLVAGP 183

Query: 189 LPEWRHPPPPLEPFEIPPVT-----VPSTPPPQLLRDSPVTFSRSSNITNCGSRKRAF 234
           LP WR+PPP  + F +PP++     +P+T    +L     +  R +      ++++ F
Sbjct: 184 LPRWRNPPPLQQSFRVPPISNSYGCLPATTTTSMLNFRGCSVPRIATGIEVATKRQRF 230

BLAST of CmaCh02G013820 vs. TAIR 10
Match: AT5G59760.1 (Protein of unknown function (DUF1635) )

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-12
Identity = 59/191 (30.89%), Postives = 96/191 (50.26%), Query Frame = 0

Query: 19  NIEELRHSLFCATLELEQTRAAVHEELRKRDEQIINLKELFSRANREREEANEKIQKLLI 78
           +I+E+R +L     ELE  +   +E+ R   E++  L  L     +ER+EA +++ +   
Sbjct: 14  SIDEMRQNLQSTLFELETLKMEANEKSRTHREEVNQLLNLLKFTQQERDEARQQLSQ--- 73

Query: 79  EKLFLQHRTGQHSGISSVEDEQRKGIDSNNGFSSSDCEESIVSSPA---IDPIPPPQFAT 138
              F+ H         + ++   + +  +N FS S    S  SS     ++  P P    
Sbjct: 74  ---FIFH---------TQQNPNSRSLTKSNSFSHSQDVSSSSSSELSTFLNIHPQPLTNL 133

Query: 139 SLPLQATSQAAVE----LVSEKLLPEKGKLLEAVMKAGPLLQTLLVAGPLPEWRHPPPPL 198
             P        ++    LV  K  PE GKLL+AV++AGPLL+TLL+AGPLP+W +PPP  
Sbjct: 134 EDPTAHNHHQQIDPLDVLVMGKAFPETGKLLKAVVEAGPLLETLLLAGPLPKWINPPPQT 189

Query: 199 EP--FEIPPVT 201
           +   FE+P ++
Sbjct: 194 QSQRFELPSIS 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G22930.14.3e-4849.19Protein of unknown function (DUF1635) [more]
AT3G44940.12.0e-4545.25Protein of unknown function (DUF1635) [more]
AT2G28140.18.3e-3644.40Protein of unknown function (DUF1635) [more]
AT2G28690.11.9e-1932.35Protein of unknown function (DUF1635) [more]
AT5G59760.13.8e-1230.89Protein of unknown function (DUF1635) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..119
NoneNo IPR availablePANTHERPTHR33431:SF3ENABLED-LIKE PROTEIN (DUF1635)coord: 3..247
IPR012862Protein of unknown function DUF1635PFAMPF07795DUF1635coord: 19..248
e-value: 3.2E-80
score: 269.2
IPR012862Protein of unknown function DUF1635PANTHERPTHR33431ENABLED-LIKE PROTEIN (DUF1635)coord: 3..247

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G013820.1CmaCh02G013820.1mRNA