CmaCh02G013230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G013230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	WHy domain-containing protein
Location	Cma_Chr02: 7758181 .. 7758738 (-)
RNA-Seq Expression	CmaCh02G013230
Synteny	CmaCh02G013230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAAGCGTAGCTGGAGCTGGAGCTGGGGGTCCGCCCTAGTCGGAGCAGCGTCGGCGATTGCAGCGACAGCGATCGTTTCCGCCAAGCCCAAGGACCCAACCTTCCACCTTATCTCAATTAAGTTCACTTCCTTCAAGCTGAAGCCGCCGGTAATTGACGCCGAGCTCATCCTGACCGTCCACGTCACCAACCCCAACGTGGCCCCCATCCACTACTCCTCTACCTCCATGTCCATTTTCTACGACGGCTCCCTCCTCGGCTCGGCCCAGGTCGACGCCGGTTCGCAGCAGGCCCGGTCCTGTCAGGTCCTCCGCCTCCCAGCCCGACTCGACGGCCTGAAGCTAGCCCACAACGGCAGCCGGTTCATCTCCGACGTCATGAAGCGAGAAATGGTTCTGGATGCGAGTGTGGATATTGGGGGAATTGCAAGAGTGCTTTGGTGGAGTCACAAGTTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTTGATGTGCTTGATCAGGAAAACACTTCCCAACTTGAGCTGTTTCTTTCTTGA

mRNA sequence

ATGGAGAAAAAGCGTAGCTGGAGCTGGAGCTGGGGGTCCGCCCTAGTCGGAGCAGCGTCGGCGATTGCAGCGACAGCGATCGTTTCCGCCAAGCCCAAGGACCCAACCTTCCACCTTATCTCAATTAAGTTCACTTCCTTCAAGCTGAAGCCGCCGGTAATTGACGCCGAGCTCATCCTGACCGTCCACGTCACCAACCCCAACGTGGCCCCCATCCACTACTCCTCTACCTCCATGTCCATTTTCTACGACGGCTCCCTCCTCGGCTCGGCCCAGGTCGACGCCGGTTCGCAGCAGGCCCGGTCCTGTCAGGTCCTCCGCCTCCCAGCCCGACTCGACGGCCTGAAGCTAGCCCACAACGGCAGCCGGTTCATCTCCGACGTCATGAAGCGAGAAATGGTTCTGGATGCGAGTGTGGATATTGGGGGAATTGCAAGAGTGCTTTGGTGGAGTCACAAGTTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTTGATGTGCTTGATCAGGAAAACACTTCCCAACTTGAGCTGTTTCTTTCTTGA

Coding sequence (CDS)

ATGGAGAAAAAGCGTAGCTGGAGCTGGAGCTGGGGGTCCGCCCTAGTCGGAGCAGCGTCGGCGATTGCAGCGACAGCGATCGTTTCCGCCAAGCCCAAGGACCCAACCTTCCACCTTATCTCAATTAAGTTCACTTCCTTCAAGCTGAAGCCGCCGGTAATTGACGCCGAGCTCATCCTGACCGTCCACGTCACCAACCCCAACGTGGCCCCCATCCACTACTCCTCTACCTCCATGTCCATTTTCTACGACGGCTCCCTCCTCGGCTCGGCCCAGGTCGACGCCGGTTCGCAGCAGGCCCGGTCCTGTCAGGTCCTCCGCCTCCCAGCCCGACTCGACGGCCTGAAGCTAGCCCACAACGGCAGCCGGTTCATCTCCGACGTCATGAAGCGAGAAATGGTTCTGGATGCGAGTGTGGATATTGGGGGAATTGCAAGAGTGCTTTGGTGGAGTCACAAGTTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTTGATGTGCTTGATCAGGAAAACACTTCCCAACTTGAGCTGTTTCTTTCTTGA

Protein sequence

MEKKRSWSWSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVIDAELILTVHVTNPNVAPIHYSSTSMSIFYDGSLLGSAQVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDVMKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLS

Homology

[Close]

BLAST of CmaCh02G013230 vs. TAIR 10
Match: AT3G44380.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 123/177 (69.49%), Postives = 148/177 (83.62%), Query Frame = 0


Query: 9   WSWGSALVGAASAIAATAIVSAKPKDPTFHLISIKFTSFKLKPPVIDAELILTVHVTNPN 68
           WSW SAL+GAASA AA +++SAKPKDPTFHLISI  TS KL  PV+DAEL+LTVHVTNPN
Sbjct: 10  WSWSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHVTNPN 69

Query: 69  VAPIHYSSTSMSIFYDGSLLGSAQVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDV 128
           +A IHYSST M+I YDG++LGSA+V AGSQ ARSCQ+LRLPARLDG++LA +  +F SDV
Sbjct: 70  IAAIHYSSTKMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQFFSDV 129

Query: 129 MKREMVLDASVDIGGIARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLS 186
             REM L+A + I G A+VLWW H F+VHVDS +TVDPVFLDV+ QEN SQ++LFL+
Sbjct: 130 ANREMKLEAKLTIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDVIGQENKSQMDLFLT 186

[Close]

BLAST of CmaCh02G013230 vs. TAIR 10
Match: AT1G52330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-08
Identity = 39/139 (28.06%), Postives = 62/139 (44.60%), Query Frame = 0


Query: 32  PKDPTFHLISIKFTSFKL--KP-PVIDAELILTVHVTNPNVAPIHYSSTSMSIFYDGSLL 91
           P DP   +I +K +   +  +P P ID  L++T+ V+N +V    ++   ++I Y G  L
Sbjct: 64  PSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTL 123

Query: 92  GSAQVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDVMKREMVLDASVDIGGIARVL 151
           G    D G   A     L   A LDG+ +  +    I D+ K  +  D   +  G   VL
Sbjct: 124 GHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVL 183

Query: 152 WWSHKFKVHVDSHLTVDPV 168
           ++    K  V   + VD V
Sbjct: 184 FFRFPLKAKVACGILVDTV 202

[Close]

BLAST of CmaCh02G013230 vs. TAIR 10
Match: AT1G52330.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 52.4 bits (124), Expect = 4.6e-07
Identity = 36/128 (28.12%), Postives = 58/128 (45.31%), Query Frame = 0


Query: 32  PKDPTFHLISIKFTSFKL--KP-PVIDAELILTVHVTNPNVAPIHYSSTSMSIFYDGSLL 91
           P DP   +I +K +   +  +P P ID  L++T+ V+N +V    ++   ++I Y G  L
Sbjct: 64  PSDPRIKIIRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTL 123

Query: 92  GSAQVDAGSQQARSCQVLRLPARLDGLKLAHNGSRFISDVMKREMVLDASVDIGGIARVL 151
           G    D G   A     L   A LDG+ +  +    I D+ K  +  D   +  G   VL
Sbjct: 124 GHVSSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVL 183

Query: 152 WWSHKFKV 157
           ++    KV
Sbjct: 184 FFRFPLKV 191

The following BLAST results are available for this feature:

BLAST of CmaCh02G013230 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G013230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44380.1	1.4e-67	69.49	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.1	4.2e-08	28.06	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.2	4.6e-07	28.13	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013990	Water stress and hypersensitive response domain	SMART	SM00769	why	coord: 42..155 e-value: 2.5E-13 score: 60.3
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 61..159 e-value: 2.5E-13 score: 50.4
None	No IPR available	GENE3D	2.60.40.1820		coord: 15..166 e-value: 1.4E-9 score: 39.9
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 3..172
None	No IPR available	PANTHER	PTHR31852:SF7	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 3..172
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 24..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G013230.1	CmaCh02G013230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009269	response to desiccation
cellular_component	GO:0016021	integral component of membrane