CmaCh02G013190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G013190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA polymerase epsilon subunit 3
Location	Cma_Chr02: 7741554 .. 7744477 (+)
RNA-Seq Expression	CmaCh02G013190
Synteny	CmaCh02G013190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGAGAGAGAAAAAAAGGGCAAAATTGATGGACCGAAACCCTCAAGGCCTCAACACTGAAATTAATGGCGCGAAACATATTCGAGAACGATGAATATGGAACTGCAGAGGCCGCCTTTGAGAAAGATCAATCTTTATGCTGAAGAGCCAAAGAAGAACACTCCGAGGCATCGTTGAGGTAGAGAGTAGAGGAAGATGGAGAAAAAAGTTGGGGCTGAGATCGAAGAGCTTCCGAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGAACCAGGATATTTCCGTCAACAAAGACTCGCTTCTAGCCTTTTGCGAGAGCGCTCGGGTCTTCATTCATTACCTCTCCGCAACGTGAGTACCGCATCCTGCCTTTTTTTTTTTTATTTTTCTTTTTTGAATCCTGAATGAAATTCTATCGATTCTGATGTTCGAAATTAGGGTTCGTTGTTTCTCTTCTGTGTGCCTGAAGAACGAAAGCGAAAGAGATTAAAGTGATGAATCTCTTGTTGTTATAGCTCTAGGATTAAATAAATTGTTGTTATGTATTAGTTAATTTTTGCGTTCGTATTAACTGGTTGATCTCTAAGCAGGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCGGAGTTGGTTAGGCCTCTTAAGGCTTCCCTCAATGGTATGTTACGTTCTAACCGCTTCGTTTACTTTTTTTTTCCCCGGAAAATCGTATCTCATTGGAGCATGAAATTGCAGGATTAATTGGAGAACTACGTTTTAATAGTTGTAGCTTTCTGAACATTCTTTGAAAGCTGAAAGATGATCTAATAGTTCTCTTTGACCTGTATTACAATTACGCATTATGTAAACACCTGAATTTAATTGGCGACGAAAATTTTCGTTTACACTCCTTTTGTTATTAATTGGTTGCTAGCATGGCCTTATTTTTATGTTCTTACATGATTTCGTTGCCTAAAATGTCTGGTATCGCTAGACTTTCAATCTCTATTTTGATAAATTTCGTTAACACTTCAGGAGTGTAAAATATTGCACAATTATTGTGCAAAGAGGGCGTTAACGTTATAAGAAAATTCTTATCAGTTCCTCAAACATCCAAGACGAGTCAGTTTGGCATTAGGATATGATAGAGTTCTCATGTGAAAGGTGGATACAAGTTACACATGAATGTTAAATGCAAGTCTGAAGGACTCTCTCGTTAGTTCCTTTAGTTGAATTGTTCATGTAGTATAAGAAGGCTGTAGGAATTCATCTCAATCTCCTTACCTAGTTTAGGGAAGAAATCAAGTGCTCCTTTGTTTTAGATAGAATTCCTATTCATTGAGTGGGGTATTGGTGAAAGTTTTTGCTGCATGACTCTTTCTACAATAGAACTCTTGCGACAAAAGAAAAGTGGATTTTTTGAAGTTCCCTCTTTAATTTCTATGAACTCTTGCTTGACATAAAAAAAGTATAATTAATCATTTACCTGAGGTTCTACTTGATTGAACTTCAAGTTGGGGGAATATAATTTAGAGTTCAAGTAACCCATGCATGCCTTTTATTAAAAAATTATGATTCAATTAGATTGAATAATTTTTCATTAAATAAATATTGAAGTGCTTATGAATCCTTGGAGGTTTTTGTTGGATCTATCTTTAGTTATGTTGTCTATTTCTATTAGTAGAAGTAATTACTTAGACCATTTTGAAAATTGGGTAAAGTGTGCAAGATTTTTATTTACTGGTGTGTAACCAGGCTCTACTAGTTCTTTTTCCGTGTAGTTTGATATGTAAGGACTGTTATGGAATCTGATTATACTTTATACTCTTGATATGAGAGATTGTATGAGATCCTTTATTAATGATTTATGTAGTGTTTTATGAAATGTTATACTGCAGTACGAGTTCAATGTGTAGATACTTTCTTTTCTCTTGATTATTAGGCAGGATGGGTAATTGTCATGCTACAGTATGCCTACTCTTTTCGGATAATATATATGAGCATAAGCTATTTTCCTATCTTGGACGACGAGTAATCGAGTCTTGAGCTAAGCCCTAGAAATCTTAGTGCCATAATGCCTTTAAAATCCTTCTAGCCATTATCTGACTGTTACGTCATTTGATATCTGTGGTTAATTTAATGTCAAACAAATGTTGAATTTATTGTACGAAGAAAGCACTTTTACTTTCCGCAGGCTATGATTTTCTATGGCATTTTCAAGCTTTTATCCAGGATGAGTATGAAAGAAAGCTAGTTGAACCTTTTTAATGATTTATTATGCAACCTTGGCTTGGCTGAATGTAGAATTCAGAAGTAAGAATGCTGGAAAGAAGGCAGCTGCGTCCAGGATAAAAGAAGCGAAAAAGAGGAAGATAGAAGAAGAGCCTACAGTTGAAGGTACTGATGGTGAAAGCAAAGATGATGTCGAAAATGACAATGACGATGACGATGACGATAACGATAAAGATGAAGATGAAGACGAAGACAAAGACGAAGTTGAGAATGGCGGCAGTGATGACTTAGAAACATGATGTATTTTGTACTTAAAATGAGGTTATTCCTCACTCAGTACGCATAAGATGGTTTACAAATCTTCTAGGACTAAATGTATATTTTTTCTGAGACTAATTTAGGTCGTATATTGTGAGCGGCAGCTGCACTTTTTGGCAAGTTCTGTATCTCTGTCCACATGGTAGTGAGAGAGGTTCCCATACCTTATCAAGTCCATTTGTTTTCTGGATTTTTCCCCATAGTTTTTCGAATGCCAGACATGAAAGGACATGTTCGTTTCTTAGTTTCTGACGTATAAAATCCACAAAATGTTGGTGCATTGGTACAGAAAACTCAACAATTATGAAATATTATTATTATTATTC

mRNA sequence

GGAAGAGAGAGAAAAAAAGGGCAAAATTGATGGACCGAAACCCTCAAGGCCTCAACACTGAAATTAATGGCGCGAAACATATTCGAGAACGATGAATATGGAACTGCAGAGGCCGCCTTTGAGAAAGATCAATCTTTATGCTGAAGAGCCAAAGAAGAACACTCCGAGGCATCGTTGAGGTAGAGAGTAGAGGAAGATGGAGAAAAAAGTTGGGGCTGAGATCGAAGAGCTTCCGAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGAACCAGGATATTTCCGTCAACAAAGACTCGCTTCTAGCCTTTTGCGAGAGCGCTCGGGTCTTCATTCATTACCTCTCCGCAACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCGGAGTTGGTTAGGCCTCTTAAGGCTTCCCTCAATGAATTCAGAAGTAAGAATGCTGGAAAGAAGGCAGCTGCGTCCAGGATAAAAGAAGCGAAAAAGAGGAAGATAGAAGAAGAGCCTACAGTTGAAGGTACTGATGGTGAAAGCAAAGATGATGTCGAAAATGACAATGACGATGACGATGACGATAACGATAAAGATGAAGATGAAGACGAAGACAAAGACGAAGTTGAGAATGGCGGCAGTGATGACTTAGAAACATGATGTATTTTGTACTTAAAATGAGGTTATTCCTCACTCAGTACGCATAAGATGGTTTACAAATCTTCTAGGACTAAATGTATATTTTTTCTGAGACTAATTTAGGTCGTATATTGTGAGCGGCAGCTGCACTTTTTGGCAAGTTCTGTATCTCTGTCCACATGGTAGTGAGAGAGGTTCCCATACCTTATCAAGTCCATTTGTTTTCTGGATTTTTCCCCATAGTTTTTCGAATGCCAGACATGAAAGGACATGTTCGTTTCTTAGTTTCTGACGTATAAAATCCACAAAATGTTGGTGCATTGGTACAGAAAACTCAACAATTATGAAATATTATTATTATTATTC

Coding sequence (CDS)

ATGGAGAAAAAAGTTGGGGCTGAGATCGAAGAGCTTCCGAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGAACCAGGATATTTCCGTCAACAAAGACTCGCTTCTAGCCTTTTGCGAGAGCGCTCGGGTCTTCATTCATTACCTCTCCGCAACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCGGAGTTGGTTAGGCCTCTTAAGGCTTCCCTCAATGAATTCAGAAGTAAGAATGCTGGAAAGAAGGCAGCTGCGTCCAGGATAAAAGAAGCGAAAAAGAGGAAGATAGAAGAAGAGCCTACAGTTGAAGGTACTGATGGTGAAAGCAAAGATGATGTCGAAAATGACAATGACGATGACGATGACGATAACGATAAAGATGAAGATGAAGACGAAGACAAAGACGAAGTTGAGAATGGCGGCAGTGATGACTTAGAAACATGA

Protein sequence

MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDKDEVENGGSDDLET

Homology

[Close]

BLAST of CmaCh02G013190 vs. ExPASy Swiss-Prot
Match: Q3SZN5 (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 49/153 (32.03%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A VF+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K + E       
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSE------- 129

Query: 132 GESKDDVENDNDDDDDDNDKDEDEDEDKDEVEN 165
              + D   D D+D+D+   +E+E  +++EV+N
Sbjct: 130 ---EQDKSRDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of CmaCh02G013190 vs. ExPASy Swiss-Prot
Match: Q9NRF9 (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 49/153 (32.03%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A VF+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K + E       
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSE------- 129

Query: 132 GESKDDVENDNDDDDDDNDKDEDEDEDKDEVEN 165
              + D   D D+D+D+   +E+E  +++EV+N
Sbjct: 130 ---EQDKSRDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of CmaCh02G013190 vs. ExPASy Swiss-Prot
Match: Q5R4W3 (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 49/153 (32.03%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A VF+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K + E       
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSE------- 129

Query: 132 GESKDDVENDNDDDDDDNDKDEDEDEDKDEVEN 165
              + D   D D+D+D+   +E+E  +++EV+N
Sbjct: 130 ---EQDKSRDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of CmaCh02G013190 vs. ExPASy Swiss-Prot
Match: Q9JKP7 (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 46/147 (31.29%), Postives = 86/147 (58.50%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A VF+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   + PLK +L  +R    GKK A+ + K+ K +K  EE       
Sbjct: 70  NASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEEQ------ 129

Query: 132 GESKDDVENDNDDDDDDNDKDEDEDED 159
            +   +VE ++++  D++D++E+E+ D
Sbjct: 130 -DKSREVEEEDEERLDEDDQNEEEEID 144

[Close]

BLAST of CmaCh02G013190 vs. ExPASy Swiss-Prot
Match: Q642A5 (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 49/153 (32.03%), Postives = 89/153 (58.17%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A VF+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K          D
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK----------D 129

Query: 132 GESKDDVENDNDDDDDDNDKDEDEDEDKDEVEN 165
            E +D  ++  ++D+D+   DE+E  +++EV+N
Sbjct: 130 CEEQD--KSREEEDEDEERLDEEEQNEEEEVDN 145

[Close]

BLAST of CmaCh02G013190 vs. TAIR 10
Match: AT2G27470.1 (nuclear factor Y, subunit B11 )

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-32
Identity = 93/194 (47.94%), Postives = 131/194 (67.53%), Query Frame = 0


Query: 9   IEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESKR 68
           ++ELP  IVRRVVK+KLS+CS + D+S++K++LLAF ESAR+FIHYLSAT+ND CK+++R
Sbjct: 8   VDELPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSATANDFCKDARR 67

Query: 69  QTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKA-------------------A 128
           QT+KA+DV KALE+M+F E + PLK+SL +F+ KNAGKKA                    
Sbjct: 68  QTMKADDVFKALEEMDFSEFLEPLKSSLEDFKKKNAGKKAGAAAASYPAGGAALKSSSGT 127

Query: 129 ASRIKEAKKRKIEEEPTVEGT-----DGESK---DDVENDN------DDDDDDNDKDEDE 170
           AS+ KE KKRK EE  T +G      D E+K   ++ ENDN      +D++D+N  DE++
Sbjct: 128 ASKPKETKKRKQEEPSTQKGARKSKIDEETKRNDEETENDNTEEENGNDEEDENGNDEED 187

[Close]

BLAST of CmaCh02G013190 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 48.5 bits (114), Expect = 6.2e-06
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E +  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of CmaCh02G013190 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 48.5 bits (114), Expect = 6.2e-06
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E +  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of CmaCh02G013190 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 48.5 bits (114), Expect = 6.2e-06
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E +  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of CmaCh02G013190 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SN++C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLISSESNEVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E V  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHK 99

The following BLAST results are available for this feature:

BLAST of CmaCh02G013190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZN5	2.6e-09	32.03	DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1	[more]
Q9NRF9	2.6e-09	32.03	DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1	[more]
Q5R4W3	2.6e-09	32.03	DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1	[more]
Q9JKP7	1.1e-07	31.29	DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1	[more]
Q642A5	1.1e-07	32.03	DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=...	[more]

BLAST of CmaCh02G013190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27470.1	3.8e-32	47.94	nuclear factor Y, subunit B11	[more]
AT5G23090.2	6.2e-06	31.18	nuclear factor Y, subunit B13	[more]
AT5G23090.1	6.2e-06	31.18	nuclear factor Y, subunit B13	[more]
AT5G23090.4	6.2e-06	31.18	nuclear factor Y, subunit B13	[more]
AT5G08190.1	1.1e-05	31.18	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 3..164 e-value: 3.6E-33 score: 116.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..136
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..80 e-value: 6.6E-9 score: 35.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..133
None	No IPR available	PANTHER	PTHR46172	DNA POLYMERASE EPSILON SUBUNIT 3	coord: 3..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G013190.1	CmaCh02G013190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0042766	nucleosome mobilization
cellular_component	GO:0008623	CHRAC
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046982	protein heterodimerization activity