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CmaCh02G013120 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCAAGAGGCCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACGTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGGTCGGACGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTATGTGATGCTGACGGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG ATGAGCAAGAGGCCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACGTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGGTCGGACGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTATGTGATGCTGACGGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG ATGAGCAAGAGGCCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACGTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGGTCGGACGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTATGTGATGCTGACGGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA Homology
BLAST of CmaCh02G013120 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.5e-10 Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 0
BLAST of CmaCh02G013120 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.2e-10 Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 0
BLAST of CmaCh02G013120 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 5.9e-04 Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 0
BLAST of CmaCh02G013120 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11 Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 0
BLAST of CmaCh02G013120 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11 Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 0
BLAST of CmaCh02G013120 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 4.2e-05 Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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