CmaCh02G013120 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G013120
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein GL2-INTERACTING REPRESSOR 1
LocationCma_Chr02: 7712474 .. 7712794 (-)
RNA-Seq ExpressionCmaCh02G013120
SyntenyCmaCh02G013120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGAGGCCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACGTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGGTCGGACGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTATGTGATGCTGACGGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG

mRNA sequence

ATGAGCAAGAGGCCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACGTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGGTCGGACGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTATGTGATGCTGACGGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG

Coding sequence (CDS)

ATGAGCAAGAGGCCGAGAAGTAGCGAGATCGAGGTCGCCTTGAGAGTGGACATGAACCGCTCGCCAACGACGTCGTCGATGAGCATGTTTGGAGGATCAGAGTCGGGATCGGGGTCGGACGTGTCGGTGGAGAGTTCTTGCTTGTCGTTGTGGGATGGGGAAGTGGAGGAGGACGAGATGATAGTAACGAGATCGATGATGCTTGTCGGGTGTCCGGGGTGCTTCATGTATGTGATGCTGACGGACAAGAGCTCCCAATGTCCCAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAACCAACAAAAACATCATGCCTAG

Protein sequence

MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA
Homology
BLAST of CmaCh02G013120 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-10
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 14  LRVDMNRSPTTSSMSMF--GGSESGSGSDVSVESSCLSLWDGEVEEDEMIV-------TR 73
           L + +N SP TSS        S S + S  S  SSC+S    E+ +DE  V       T 
Sbjct: 8   LELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVS---SEMNQDEPSVRYSTSPETT 67

Query: 74  SMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA 107
           SM+LVGCP C MYVML++   +CPKCK+ V LDF ++   +A
Sbjct: 68  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNA 106

BLAST of CmaCh02G013120 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-10
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
           MS+R ++      L + +N SP  S  S      S + S+ +  SSC+S    E  ++E 
Sbjct: 1   MSRRNKNGP---KLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVS---SETNQEEN 60

Query: 61  IVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQ 102
               SM+LVGCP C MYVML+D   +CPKCK+ V LDF  +
Sbjct: 61  ETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95

BLAST of CmaCh02G013120 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-04
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 39 SDVSVESSCLSLWDGEVEEDEMIVTRSMMLVGCPGCFMYVMLT-DKSSQCPKCKNNVFLD 98
          S +  ESS  SL   E E       +SM++VGCP C MY++ + +   +CP+C ++V LD
Sbjct: 23 SSLLTESSSSSLCSEEAEGGGG-EAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLD 82

BLAST of CmaCh02G013120 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 14  LRVDMNRSPTTSSMSMF--GGSESGSGSDVSVESSCLSLWDGEVEEDEMIV-------TR 73
           L + +N SP TSS        S S + S  S  SSC+S    E+ +DE  V       T 
Sbjct: 8   LELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVS---SEMNQDEPSVRYSTSPETT 67

Query: 74  SMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA 107
           SM+LVGCP C MYVML++   +CPKCK+ V LDF ++   +A
Sbjct: 68  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNA 106

BLAST of CmaCh02G013120 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 1   MSKRPRSSEIEVALRVDMNRSPTTSSMSMFGGSESGSGSDVSVESSCLSLWDGEVEEDEM 60
           MS+R ++      L + +N SP  S  S      S + S+ +  SSC+S    E  ++E 
Sbjct: 1   MSRRNKNGP---KLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVS---SETNQEEN 60

Query: 61  IVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQ 102
               SM+LVGCP C MYVML+D   +CPKCK+ V LDF  +
Sbjct: 61  ETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95

BLAST of CmaCh02G013120 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.2e-05
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 39 SDVSVESSCLSLWDGEVEEDEMIVTRSMMLVGCPGCFMYVMLT-DKSSQCPKCKNNVFLD 98
          S +  ESS  SL   E E       +SM++VGCP C MY++ + +   +CP+C ++V LD
Sbjct: 23 SSLLTESSSSSLCSEEAEGGGG-EAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLD 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FNI12.5e-1042.16Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1... [more]
Q9SRN44.2e-1039.60Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1... [more]
Q9FMS45.9e-0439.34Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
AT5G06270.11.8e-1142.16unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G11600.13.0e-1139.60unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT5G22270.14.2e-0539.34unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..41
NoneNo IPR availablePANTHERPTHR33177:SF46SUBFAMILY NOT NAMEDcoord: 1..106
NoneNo IPR availablePANTHERPTHR33177PUTATIVE-RELATEDcoord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G013120.1CmaCh02G013120.1mRNA