CmaCh02G013110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G013110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Poly(A)-specific ribonuclease
Location	Cma_Chr02: 7708292 .. 7709104 (-)
RNA-Seq Expression	CmaCh02G013110
Synteny	CmaCh02G013110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCACCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAACGGTTCATTTGGGAGTTTAATTTCAGGGATTTCGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGTGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAGATGAGGGATGTGTACTTCGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

mRNA sequence

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCACCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAACGGTTCATTTGGGAGTTTAATTTCAGGGATTTCGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGTGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAGATGAGGGATGTGTACTTCGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

Coding sequence (CDS)

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCACCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAACGGTTCATTTGGGAGTTTAATTTCAGGGATTTCGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGTGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAGATGAGGGATGTGTACTTCGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

Protein sequence

MLIQHLSSPIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY

Homology

[Close]

BLAST of CmaCh02G013110 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.9e-109
Identity = 194/271 (71.59%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 6   LSSPIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVR---PAFHPSRPSDHYL 65
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +          P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 66  LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 125
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 126 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 185
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 186 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 245
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 246 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of CmaCh02G013110 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 7.8e-109
Identity = 186/261 (71.26%), Postives = 219/261 (83.91%), Query Frame = 0


Query: 13  REVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALN 72
           REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P D Y LLK+NVDAL+
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 73  LIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERN 132
           LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPDSI+LL+RQGIDFERN
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 133 RAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILK 192
              GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTRR+LP  L EF ++++
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 193 AFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 252
             FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAGSDSLLTWHAFQ+MRD
Sbjct: 200 VLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRD 259

Query: 253 VYFGKDGPEKHAGVLYGLEVY 271
           +YF +DGPEKHAGVLYGLEV+
Sbjct: 260 LYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of CmaCh02G013110 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 5.8e-80
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 69
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 250 DVYFGKDGPEKHAGVLYGLEV 270
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of CmaCh02G013110 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.1e-78
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]

BLAST of CmaCh02G013110 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 3.5e-77
Identity = 141/262 (53.82%), Postives = 193/262 (73.66%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +PF++MDTEFPG+V RP     +    HY  LK+NV
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRF-IWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 129
           + L +IQ+GLT SD  GNLPT GTD ++ IW+FNFR+FD+  D++A DSI+LL++ GIDF
Sbjct: 70  NILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129

Query: 130 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 189
            +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP     F +
Sbjct: 130 VKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFE 189

Query: 190 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 249
           ++  +F  +VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K+
Sbjct: 190 MISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKL 249

Query: 250 RDVYFGKDGPEKHAGVLYGLEV 270
           ++ +F     EK++GVLYGL V
Sbjct: 250 QENFF-IGSMEKYSGVLYGLGV 268

[Close]

BLAST of CmaCh02G013110 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 395.2 bits (1014), Expect = 4.2e-110
Identity = 194/271 (71.59%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 6   LSSPIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVR---PAFHPSRPSDHYL 65
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +          P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 66  LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 125
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 126 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 185
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 186 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 245
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 246 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of CmaCh02G013110 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 394.8 bits (1013), Expect = 5.5e-110
Identity = 186/261 (71.26%), Postives = 219/261 (83.91%), Query Frame = 0


Query: 13  REVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALN 72
           REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P D Y LLK+NVDAL+
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 73  LIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERN 132
           LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPDSI+LL+RQGIDFERN
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 133 RAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILK 192
              GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTRR+LP  L EF ++++
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 193 AFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 252
             FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAGSDSLLTWHAFQ+MRD
Sbjct: 200 VLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRD 259

Query: 253 VYFGKDGPEKHAGVLYGLEVY 271
           +YF +DGPEKHAGVLYGLEV+
Sbjct: 260 LYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of CmaCh02G013110 vs. TAIR 10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 298.9 bits (764), Expect = 4.1e-81
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 69
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 250 DVYFGKDGPEKHAGVLYGLEV 270
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of CmaCh02G013110 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 292.7 bits (748), Expect = 2.9e-79
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]

BLAST of CmaCh02G013110 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 292.7 bits (748), Expect = 2.9e-79
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 10  IHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

The following BLAST results are available for this feature:

BLAST of CmaCh02G013110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS6	5.9e-109	71.59	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	7.8e-109	71.26	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	5.8e-80	55.17	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SAI2	4.1e-78	54.96	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	3.5e-77	53.82	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of CmaCh02G013110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22250.1	4.2e-110	71.59	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	5.5e-110	71.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	4.1e-81	55.17	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	2.9e-79	54.96	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	2.9e-79	54.96	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..269 e-value: 1.7E-95 score: 321.2
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 17..135 e-value: 1.7E-8 score: 34.1
None	No IPR available	PANTHER	PTHR10797:SF48	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 6..270
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 6..270
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G013110.1	CmaCh02G013110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0016740	transferase activity