CmaCh02G013090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G013090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor E2FB-like
Location	Cma_Chr02: 7700431 .. 7705946 (+)
RNA-Seq Expression	CmaCh02G013090
Synteny	CmaCh02G013090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCGCTTCCCTCCACATCTATATCCGAACGAACCAAGTGTTCCCTCCTTCCTTTCAGCCTTCTCCCTTCTCCTTTGCTCTCTGAATCTCTCCCGCTTTCCTCCATTTTCTGAGCATCCAACACCCTCACAGATCTCTTCCCTTACCTTCTTCAAATTCTTCTTCAATTTCCATCGATTTCCCCCAATTCGCAACACTCAAGGAGCTCACTCGATCTTAACCTCTCCGTCTCTTCAACGCTGCTCCATGTCGGGTTCTCCTGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGTCACCTCCCTTTCTCTTCTATCAAACCACCATTTGCATCTCCTGGGGACTATCACTGCTTTGCCCTCGACTCTCCACTCGCCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGGTCTGTTTCTTTTACATGCATGTTTTTGTTGGTTAATTATTTATCGCTCGTCACTCTCACTATTATTCTATGAGTTTCTGTTTGTGATTATAGTCTCAAATCCAAATCTGTCTGGTTAGTAGGTCTTTACGGCTTCTCAGGAATGGAAGTAGGTGAGATTAGTGAAAATAGTTAGTTTCACTGATTTCGTCATACTGAGCTTGAGACTGTGCCTTTTGAATACTGCGCCGAAAAGAACATGAATTTTAGCTCAATTTTGGTGTTACTTTAGTGAAGGAATTATGATGTTATCACCTTCAATTCGTGTCTTTCTTCTGTACCTTGTTAAGTGTATCGAGTATTTCAGTCTCCTTCCATTCTTGACCAGTGCATTTGTTGGTCACTATGACTTATTCTCTCTCGGAACTTCTTAATTTTCACCGACTAACTACTTTTCACTATATTGCACTTGGTCCTTTTGATCAGATCAGGTGAAATGCTAGGGATATAGATAGTTTGCGTTCTATTGATGGGTAAATAAAGAGTTGGTAGCTACAAAGTCAGAACCCTGGTCCTTATTGCAGATAGATGATACTTGTGAAATAGGTTTCATGATTATTTTTCTACAAAAAAAATGTTAAAGGTATAGTGAAGGATGTGTTTGTTCGACAGTAAGTTCTCAGTTCTAATTATAGTACATTATCTATGCCTGATATATACAAATGATAGTGGAAGGCAACTACGACGAGGGGTATGTTACCTTGCTTGATCTATTCATGTAGTATTATTGTGAGTTGACATATTCAATCTCGGGTATAACCAAAATGATTCTAGCTCAGTGGTCAAATAGGTCAGCAAAAAAGGCATTCCACTTTTTTTAGTTGTAGGTGCTCCAATTCTGTAAAGGGCTACATCTCCTGATCATCCTTGAAACTCCCCAGTTCATAATTTTTGTATTTTTAGGCTACTATCATATGTTATATACAATTATTCTGAGAAGTTAATTTAATTGCTGTTATGCATGGTTTGAATACCCCGTACTCTTGTACTTGTAATGGTGTATTCTTTCAAGAATATTTTTCATACATGTTATCTTGATTTCATAATCGAGATCTTGACGTTCGTGGAATGCTAGGGATGTGCATTGTTTGAATTCATGGATATCTCAAGCTACTACATGCTAATAAAAAAAGGATGGATGGTGTTTTATTTATTCAGTATTTTTTTTACTGAACTAGATTTTTCAGTTGAGGTTTATTGTCGTTTTTGAATGATTCCATCGTGAGGTCCTTGAATTTTTTTACCTTGTAAATAATTTGTTTCTTCAACCTTTGTTTCACGTCAATCATATTTCTAAAATCTCTCAAGTGTGGACAAAAATGAACCACCCTCCATGTTCATTGACAATTTTCTTTTTAGATAATTAATTCAAGTATAATCTTACTGCTTTGGGACATCCACCAAGACAATCAAATGGAAATGAAATCAGGGTGGATCTTGGACGTTCTGACTCACGATGGTACTAGAAGAGTTTAACACATGAAGGACATTTCCAAGTTGGCAGTAACACTCTTCCATATTCTAAGTGAAAAGATGGAAAACAAACTATCGAAATCAAAGAAAAATGAGCTAATGAGAACATAATAGAGAATTGGCCTAGGATAACAGAACAGACAAACACATCCTAATAATTTCTGTGAAATCTTTCAATGTGATATTTATATTTATCTTTTCAACTCTTCTTTATTTTTCTCTTGCTTCTTCCCCTTCTCCCCCTTTACGTCTAGGGATATTCTTCGTCTTTCTCAAAATTTTCAATCTGAAGAATATTTAGAGGTTGTTTTAAAATTGTTTTGAAAAGTAGGTTTTTTGTTTCTTAATTTTTTTTTTCTTTGTATAAACATGTTAATTTTTTTATGACTGCTTGAAAAAGTTTATCTTGTTCTTTCTTTTAGCGTGTTCTTCCAAATGATCCATTCCCCGAATAAGTTATTTGTTTCAAATTCATGAATCTGTCTTATCTGTTTTGGTACTTTTGCTAGTACCTCGATCACAGTTGTCAAAAAATGGTTTTGAAAACAAAATCAGAAAACTGTTTCAAACTAGTTTTCCGAACAATCCTATAGTATTTGAGAAAGATGTTTCAACTTCGATATTTGCGTGAATAGAAAAAGAGGGGAAATTAGGACTAATTATTGAAAGAATTGTAGTATATGCCCTTTTTAAAGACATTGTTCTCGATGTTCCTTTATATTTTTATGCTCCCATGGCAATCCAATTTTTTTTTAAACATTTGTCATTTTACCAAATATAACCTTAGTAGTAAACTAGATAGGTAGTGGTATTAACAGGTTGAATGACAAGTATGGGATGGCATTTTGAAAGTGTTTATTATTCTTGCAAATTGGGATAGTTTTGATATTATGATTTTTCTGAACATCTACAAAAAGTTCTTATGGAAGGGTTGGTCATGTAAAAACCGCTATTGGAGGACTTTTTGCATGCCTCAATCCTGATCATTCTCATTCATTAGGTTCTTACATTTCAAAGAAACGGAACTCTCAGCATGACCTAAATAATCATTACTGAGCTCAGCTACAAATTATCCTCCAATACATTGTTGAGGATTTTATTGCTTATTGATCATTCATTTAGAGATAAGTCTAAGATATTTTCTGCCCATACTTTCTTAGCTAGTCTTTGATGACTTGAGAGGAGGAGAGATTCTCAAGGTTTAAATAGTGCTCTTGTGGATCTTTGGGTTTTCATTTGTTTAAAAGCTTCCTCTTGGCTACTCGAACTAAAACCTTTAGTAAATCATTTCTTCCCTTGATCTAACACCACTTGGAGAGTGCTCTTATCAAAATCTTCGGATGTCATTTGTTTGAAAGGTTTGTCTGGGCTTTGGTTGGGAGGATGTGCTATAACCTATGAGGAAACTGGACCATGAATTATTATAGCTTGCAAGCAGTTATGAAGCCTAAGATTATGAAGGAAGGTGTGCCGCTGGTTGATAAAAGCCCACATGCTCTGGATTCAATGGATGCCATGGATATTTTAGACGACTTGCTTAGATAGGAGTTAGTTTAGGCTTAGCAGTATAACAACTTGCATCTGACATACCTCCATCAAGTCTTAATGGAACAACTGAGAATGAGATTCTATCCAATATATATCACAAGAATTAATTTTCTAGACTTATGGTCTGTGTGATAGGAGCTGTATTATTGTCTTTCTGGTCTTGAAAGTAATTAACCAAATAACTTTCTTTCCCCAGTTTGAAAGACAGCAGATTTTCTTTATTAATATAGCTCTCTGATAATAATCATTTTCTTTATTAAATTAGCCTTCTTAGTTTATGTAATGATACAATCGTTTGTTGCACATGTTGCTAAGTTTGTTTGAAATATTGGATCCTGTCTATCAGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGTAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTAGTAGTATATCATACATGTTGGTACCCTTGGTTTTGAGTCAAAATAATTGCCATATATGAAATACCTTCTCCCATTCTTGTTGAGTGAGGAAAGTGAAACCTCTTTCGCTAGTGAAAATACATAATTAGTTTATTTGAAAATTTTTCAACTTCTTCCCCCTTTTTGTTTCACAAAGCTAGCATATTAATGAGAAAATGTCTAAGTTTCAGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTAACTTGTTACTTCTGGTGACTTTGTTGGAACTGTCTTATGTTTCCTACTAGCGTACATTCCTAATTTTAGTAATTTTCATGTAGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTAACTGTACTTCTAGAACATTATTAGCTTTTATTGTGAAGTTCAATAAGTTGACATTTTTGTGCTTTTAGGTACAAAAAAGACGAATATATGATATAACGAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAACTTAAGAACAGAATTCAGTGGAAGTATGTATTATGCCATACATTCTTTGGAGGTTCATGGCTCATTATTAAATAGTATTGTCTTTCCTGTGAAGCTACTTATTACTTGAGTAACTGATTAATTAGGGGGCTTGACGTCTCAAGACCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGTATGCAAAAACCGAACATTTTGACTATGTCCTTCGTTTCTGCTGCTACTCTTTGATCTCAATATGATTAGACTTGTATTCTATCAAAAGGAACAAAATTGAGTTTGTTGGGTGGAATTGCATGAAATTTGCAAGAAAGAAAGTATTTGATTGCATTTACATGTCCGTGTCATTGTTGTTTACTTCTTAATCTTTCGACATCACTTTGGGCTGTGCTGATTTGTCGACCATATTATTTTTTATTAACATGATGATGACCACTGTGTACATATTCTGTCGAGTGAGTCCATTTATGCCCTTCAGTTCACATTCTGTCTCAATCTTATTCTTGACGTTGGTAAGTTTCTCTTTGGTGAAAAATTTTGTTTCCTAGCTAATACTTGCACATTTTAATTTCAAGCTACCAGATTAAGCCTCAATCATAGTTACATGTGCAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGGTTGTTAACTAGTCCTTAATTCAGTCTTGAAATTGAAAATTTTGTGCCCCTAATGTCATTCAGAGGCTTTTAATAATTGCAGAGAGATGCAGGAAAGATTAAGAGACCTCAGTGAAGAGGAGAACAACCAAAGGCAATAGTTTTCACCAAAATTCACCTCCTAACGTTATTATTACTTTTTTTTTTGTAATAAAGATGGGAATTTAAAAGTCGTATAATTTTATCTAATTGTTAGG

mRNA sequence

AAGCGCTTCCCTCCACATCTATATCCGAACGAACCAAGTGTTCCCTCCTTCCTTTCAGCCTTCTCCCTTCTCCTTTGCTCTCTGAATCTCTCCCGCTTTCCTCCATTTTCTGAGCATCCAACACCCTCACAGATCTCTTCCCTTACCTTCTTCAAATTCTTCTTCAATTTCCATCGATTTCCCCCAATTCGCAACACTCAAGGAGCTCACTCGATCTTAACCTCTCCGTCTCTTCAACGCTGCTCCATGTCGGGTTCTCCTGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGTCACCTCCCTTTCTCTTCTATCAAACCACCATTTGCATCTCCTGGGGACTATCACTGCTTTGCCCTCGACTCTCCACTCGCCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGTAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACGAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAACTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGACCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGAGACCTCAGTGAAGAGGAGAACAACCAAAGGCAATAG

Coding sequence (CDS)

ATGTCGGGTTCTCCTGCTCCCAACTCCTCTGGCCACCCGCCGGAGCAGATCATGCTCTCTCTTAAACGTCACCTCCCTTTCTCTTCTATCAAACCACCATTTGCATCTCCTGGGGACTATCACTGCTTTGCCCTCGACTCTCCACTCGCCGATCAACAACTTGACTCTATCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACTGATAGAGCAGCTGGTCCTAGATTTACTGAAGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTAAAAGGAGGAAAGGGTAACAAATCAAGGCTAACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTATGCAAACAATCTTACTCCAGTTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCCGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACGAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAACTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGACCAGGGGATGTTGATGACAACTATGCTGGTCTACAGGCGGAAGTAGAGAACCTTTCCATGGAGGAGAATGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGAGACCTCAGTGAAGAGGAGAACAACCAAAGGCAATAG

Protein sequence

MSGSPAPNSSGHPPEQIMLSLKRHLPFSSIKPPFASPGDYHCFALDSPLADQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQRQ

Homology

[Close]

BLAST of CmaCh02G013090 vs. ExPASy Swiss-Prot
Match: Q9FV71 (Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.4e-62
Identity = 149/252 (59.13%), Postives = 174/252 (69.05%), Query Frame = 0


Query: 14  PEQIMLSLKR-HLPFSSIKPPFASPGDYHCFAL-----DSPLADQQL-DSIVVKSPQLKR 73
           P+Q   S ++ H   SS+KPP  +PG+YH F          +ADQ + D+IV+KS  LKR
Sbjct: 6   PQQFPSSKRQLHPSLSSMKPPLVAPGEYHRFDAAETRGGGAVADQVVSDAIVIKS-TLKR 65

Query: 74  KSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNK-SRLTKCSRSGPQTPMSNV 133
           K++  +   E  +   G           QTPVS KGGK  K SR  K ++SG     SN 
Sbjct: 66  KTDLVNQIVEVNELNTGVL---------QTPVSGKGGKAKKTSRSAKSNKSGTLASGSNA 125

Query: 134 GSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 193
           GSP  NN    G CRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN
Sbjct: 126 GSP-GNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 185

Query: 194 VLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQER 253
           VLEGIGLIEK LKNRIQWKGLDVS+PG+  ++ A LQ EV+NL+ EE  LD+QIRE QER
Sbjct: 186 VLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQER 245

Query: 254 LRDLSEEENNQR 258
           L  LSE+ENN+R
Sbjct: 246 LTSLSEDENNKR 246

[Close]

BLAST of CmaCh02G013090 vs. ExPASy Swiss-Prot
Match: Q9FNY0 (Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 8.3e-60
Identity = 145/280 (51.79%), Postives = 177/280 (63.21%), Query Frame = 0


Query: 2   SGSPAPNSSGHPPEQ--------IMLSLKRHLPFSSIKPPFASPGDYHCFALDS------ 61
           S  P P    HPP          ++  ++RHL F+S KPPF    DYH F   S      
Sbjct: 11  SSQPPPPPPHHPPSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSSLSNNND 70

Query: 62  -------PLADQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSV 121
                   + D++ D++VV+SP  KRK+      A S +      FT + +S  QTP   
Sbjct: 71  RSFVHGCGVVDREEDAVVVRSPSRKRKATMDMVVAPSNNGFTSSGFTNIPSSPCQTP--R 130

Query: 122 KGGKGNKSRLTKCSRSGPQTPMS-NVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQA 181
           KGG+ N     K ++S PQTP+S N GSP    LTP G CRYDSSLGLLTKKF+NLIKQA
Sbjct: 131 KGGRVNIKSKAKGNKSTPQTPISTNAGSPI--TLTPSGSCRYDSSLGLLTKKFVNLIKQA 190

Query: 182 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYA 241
           +DG+LDLNKAA+TLEVQKRRIYDITNVLEGI LIEK  KNRI WKG+D   PGD D + +
Sbjct: 191 KDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVDAC-PGDEDADVS 250

Query: 242 --GLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQR 258
              LQAE+ENL++EE  LD QIR+ +ERLRDLSE E NQ+
Sbjct: 251 VLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQK 285

[Close]

BLAST of CmaCh02G013090 vs. ExPASy Swiss-Prot
Match: Q9FV70 (Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.8e-31
Identity = 95/238 (39.92%), Postives = 126/238 (52.94%), Query Frame = 0


Query: 20  SLKRHLPFSSIKPPFASPGDYHCFALDSPLADQQLDSIVVKSPQLKRKSEAADYEAESTD 79
           S+ + LP S + P            L SP  D     I  K  + ++          +  
Sbjct: 49  SVSQSLPNSQLSP------------LISPHWDDSYSQITQKVQKSRKNHRIQLGSIANMS 108

Query: 80  RAAGPRFTEVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPC 139
                   +V+     +P +VK         TK  ++G +     V +   N  +    C
Sbjct: 109 GGESIDIAKVIVKQESSPQNVKRVYNKSKGGTKLLKAGKRMANGEVQNGGLNGASI--NC 168

Query: 140 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 199
           RYDSSLGLLTKKF+ LI++AEDG LDLN  A  LEVQKRRIYDITNVLEGIGLIEK  KN
Sbjct: 169 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKN 228

Query: 200 RIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQR 258
            I+WKG D     D+ D  + L++EVE++  EE+ LD+ IRE QE LR L E++  +R
Sbjct: 229 HIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRR 272

[Close]

BLAST of CmaCh02G013090 vs. ExPASy Swiss-Prot
Match: O00716 (Transcription factor E2F3 OS=Homo sapiens OX=9606 GN=E2F3 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29
Identity = 86/174 (49.43%), Postives = 103/174 (59.20%), Query Frame = 0


Query: 85  RFTEVVNSSHQ-TPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDS 144
           R  E+  S HQ     +K  KG K R    S   P+TP S           P    RYD+
Sbjct: 134 RRLELGESGHQYLSDGLKTPKG-KGRAALRSPDSPKTPKS-----------PSEKTRYDT 193

Query: 145 SLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 204
           SLGLLTKKFI L+ Q+ DG+LDLNKAA+ L+VQKRRIYDITNVLEGI LI+KK KN +QW
Sbjct: 194 SLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQW 253

Query: 205 KGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQR 258
            G  +S  G +     GL  EV  LS EE  LDE I+     L+ L+E+  NQR
Sbjct: 254 MGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQR 295

[Close]

BLAST of CmaCh02G013090 vs. ExPASy Swiss-Prot
Match: O35261 (Transcription factor E2F3 OS=Mus musculus OX=10090 GN=E2f3 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29
Identity = 86/174 (49.43%), Postives = 103/174 (59.20%), Query Frame = 0


Query: 85  RFTEVVNSSHQ-TPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDS 144
           R  E+  S HQ     +K  KG K R    S   P+TP S           P    RYD+
Sbjct: 126 RRLELGESGHQYLSDGLKTPKG-KGRAALRSPDSPKTPKS-----------PSEKTRYDT 185

Query: 145 SLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 204
           SLGLLTKKFI L+ Q+ DG+LDLNKAA+ L+VQKRRIYDITNVLEGI LI+KK KN +QW
Sbjct: 186 SLGLLTKKFIQLLSQSPDGVLDLNKAAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQW 245

Query: 205 KGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQR 258
            G  +S  G +     GL  EV  LS EE  LDE I+     L+ L+E+  NQR
Sbjct: 246 MGCSLSEDGGMLAQCQGLSKEVTELSQEEKKLDELIQSCTLDLKLLTEDSENQR 287

[Close]

BLAST of CmaCh02G013090 vs. TAIR 10
Match: AT5G22220.2 (E2F transcription factor 1 )

HSP 1 Score: 241.1 bits (614), Expect = 9.7e-64
Identity = 149/252 (59.13%), Postives = 174/252 (69.05%), Query Frame = 0


Query: 14  PEQIMLSLKR-HLPFSSIKPPFASPGDYHCFAL-----DSPLADQQL-DSIVVKSPQLKR 73
           P+Q   S ++ H   SS+KPP  +PG+YH F          +ADQ + D+IV+KS  LKR
Sbjct: 6   PQQFPSSKRQLHPSLSSMKPPLVAPGEYHRFDAAETRGGGAVADQVVSDAIVIKS-TLKR 65

Query: 74  KSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNK-SRLTKCSRSGPQTPMSNV 133
           K++  +   E  +   G           QTPVS KGGK  K SR  K ++SG     SN 
Sbjct: 66  KTDLVNQIVEVNELNTGVL---------QTPVSGKGGKAKKTSRSAKSNKSGTLASGSNA 125

Query: 134 GSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 193
           GSP  NN    G CRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN
Sbjct: 126 GSP-GNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 185

Query: 194 VLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQER 253
           VLEGIGLIEK LKNRIQWKGLDVS+PG+  ++ A LQ EV+NL+ EE  LD+QIRE QER
Sbjct: 186 VLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQER 245

Query: 254 LRDLSEEENNQR 258
           L  LSE+ENN+R
Sbjct: 246 LTSLSEDENNKR 246

[Close]

BLAST of CmaCh02G013090 vs. TAIR 10
Match: AT5G22220.3 (E2F transcription factor 1 )

HSP 1 Score: 241.1 bits (614), Expect = 9.7e-64
Identity = 149/252 (59.13%), Postives = 174/252 (69.05%), Query Frame = 0


Query: 14  PEQIMLSLKR-HLPFSSIKPPFASPGDYHCFAL-----DSPLADQQL-DSIVVKSPQLKR 73
           P+Q   S ++ H   SS+KPP  +PG+YH F          +ADQ + D+IV+KS  LKR
Sbjct: 6   PQQFPSSKRQLHPSLSSMKPPLVAPGEYHRFDAAETRGGGAVADQVVSDAIVIKS-TLKR 65

Query: 74  KSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNK-SRLTKCSRSGPQTPMSNV 133
           K++  +   E  +   G           QTPVS KGGK  K SR  K ++SG     SN 
Sbjct: 66  KTDLVNQIVEVNELNTGVL---------QTPVSGKGGKAKKTSRSAKSNKSGTLASGSNA 125

Query: 134 GSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 193
           GSP  NN    G CRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN
Sbjct: 126 GSP-GNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 185

Query: 194 VLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEENGLDEQIREMQER 253
           VLEGIGLIEK LKNRIQWKGLDVS+PG+  ++ A LQ EV+NL+ EE  LD+QIRE QER
Sbjct: 186 VLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQER 245

Query: 254 LRDLSEEENNQR 258
           L  LSE+ENN+R
Sbjct: 246 LTSLSEDENNKR 246

[Close]

BLAST of CmaCh02G013090 vs. TAIR 10
Match: AT2G36010.1 (E2F transcription factor 3 )

HSP 1 Score: 236.5 bits (602), Expect = 2.4e-62
Identity = 145/278 (52.16%), Postives = 177/278 (63.67%), Query Frame = 0


Query: 2   SGSPAPNSSGHPPEQ--------IMLSLKRHLPFSSIKPPFASPGDYHCFALDS------ 61
           S  P P    HPP          ++  ++RHL F+S KPPF    DYH F   S      
Sbjct: 11  SSQPPPPPPHHPPSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSSLSNNND 70

Query: 62  -------PLADQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSV 121
                   + D++ D++VV+SP  KRK+      A S +      FT + +S  QTP   
Sbjct: 71  RSFVHGCGVVDREEDAVVVRSPSRKRKATMDMVVAPSNNGFTSSGFTNIPSSPCQTP--R 130

Query: 122 KGGKGNKSRLTKCSRSGPQTPMS-NVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQA 181
           KGG+ N     K ++S PQTP+S N GSP    LTP G CRYDSSLGLLTKKF+NLIKQA
Sbjct: 131 KGGRVNIKSKAKGNKSTPQTPISTNAGSPI--TLTPSGSCRYDSSLGLLTKKFVNLIKQA 190

Query: 182 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYA 241
           +DG+LDLNKAA+TLEVQKRRIYDITNVLEGI LIEK  KNRI WKG+D   PGD D + +
Sbjct: 191 KDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVDAC-PGDEDADVS 250

Query: 242 GLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQR 258
            LQAE+ENL++EE  LD QIR+ +ERLRDLSE E NQ+
Sbjct: 251 VLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQK 283

[Close]

BLAST of CmaCh02G013090 vs. TAIR 10
Match: AT2G36010.3 (E2F transcription factor 3 )

HSP 1 Score: 231.9 bits (590), Expect = 5.9e-61
Identity = 145/280 (51.79%), Postives = 177/280 (63.21%), Query Frame = 0


Query: 2   SGSPAPNSSGHPPEQ--------IMLSLKRHLPFSSIKPPFASPGDYHCFALDS------ 61
           S  P P    HPP          ++  ++RHL F+S KPPF    DYH F   S      
Sbjct: 11  SSQPPPPPPHHPPSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSSLSNNND 70

Query: 62  -------PLADQQLDSIVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSV 121
                   + D++ D++VV+SP  KRK+      A S +      FT + +S  QTP   
Sbjct: 71  RSFVHGCGVVDREEDAVVVRSPSRKRKATMDMVVAPSNNGFTSSGFTNIPSSPCQTP--R 130

Query: 122 KGGKGNKSRLTKCSRSGPQTPMS-NVGSPYANNLTPVGPCRYDSSLGLLTKKFINLIKQA 181
           KGG+ N     K ++S PQTP+S N GSP    LTP G CRYDSSLGLLTKKF+NLIKQA
Sbjct: 131 KGGRVNIKSKAKGNKSTPQTPISTNAGSPI--TLTPSGSCRYDSSLGLLTKKFVNLIKQA 190

Query: 182 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYA 241
           +DG+LDLNKAA+TLEVQKRRIYDITNVLEGI LIEK  KNRI WKG+D   PGD D + +
Sbjct: 191 KDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVDAC-PGDEDADVS 250

Query: 242 --GLQAEVENLSMEENGLDEQIREMQERLRDLSEEENNQR 258
              LQAE+ENL++EE  LD QIR+ +ERLRDLSE E NQ+
Sbjct: 251 VLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQK 285

[Close]

BLAST of CmaCh02G013090 vs. TAIR 10
Match: AT2G36010.2 (E2F transcription factor 3 )

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-36
Identity = 123/331 (37.16%), Postives = 157/331 (47.43%), Query Frame = 0


Query: 2   SGSPAPNSSGHPPEQ--------IMLSLKRHLPFSSIKPPFASPGDYHCFALDS------ 61
           S  P P    HPP          ++  ++RHL F+S KPPF    DYH F   S      
Sbjct: 11  SSQPPPPPPHHPPSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSSLSNNND 70

Query: 62  -------PLADQQLDSIVVKSP-------------------------------------- 121
                   + D++ D++VV+SP                                      
Sbjct: 71  RSFVHGCGVVDREEDAVVVRSPIFPSEIGLEIRGCFGDFDCYLLLLSLIQKLRSVRLSSI 130

Query: 122 ------------QLKRKSEAADYEAESTDRAAGPRFTEVVNSSHQTPVSVKGGKGNKSRL 181
                         KRK+      A S +      FT + +S  QTP   KGG+ N    
Sbjct: 131 RVNFCRLFSFAMSRKRKATMDMVVAPSNNGFTSSGFTNIPSSPCQTP--RKGGRVNIKSK 190

Query: 182 TKCSRSGPQTPMSNVGSPYANNLTPVGPCRYDSSL-GLLTKKFINLIKQAEDGILDLNKA 241
            K ++S PQTP+S       N +       + S +  LLTKKF+NLIKQA+DG+LDLNKA
Sbjct: 191 AKGNKSTPQTPIS------TNAVRSFYEISFMSRVTSLLTKKFVNLIKQAKDGMLDLNKA 250

Query: 242 ADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYA--GLQAEVEN 259
           A+TLEVQKRRIYDITNVLEGI LIEK  KNRI WKG+D   PGD D + +   LQAE+EN
Sbjct: 251 AETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGVDAC-PGDEDADVSVLQLQAEIEN 310

The following BLAST results are available for this feature:

BLAST of CmaCh02G013090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV71	1.4e-62	59.13	Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1	[more]
Q9FNY0	8.3e-60	51.79	Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1	[more]
Q9FV70	2.8e-31	39.92	Transcription factor E2FC OS=Arabidopsis thaliana OX=3702 GN=E2FC PE=1 SV=1	[more]
O00716	3.4e-29	49.43	Transcription factor E2F3 OS=Homo sapiens OX=9606 GN=E2F3 PE=1 SV=1	[more]
O35261	3.4e-29	49.43	Transcription factor E2F3 OS=Mus musculus OX=10090 GN=E2f3 PE=1 SV=2	[more]

BLAST of CmaCh02G013090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22220.2	9.7e-64	59.13	E2F transcription factor 1	[more]
AT5G22220.3	9.7e-64	59.13	E2F transcription factor 1	[more]
AT2G36010.1	2.4e-62	52.16	E2F transcription factor 3	[more]
AT2G36010.3	5.9e-61	51.79	E2F transcription factor 3	[more]
AT2G36010.2	1.3e-36	37.16	E2F transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 218..258
None	No IPR available	COILS	Coil	Coil	coord: 156..176
None	No IPR available	GENE3D	6.10.250.540		coord: 212..258 e-value: 3.6E-7 score: 32.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..129
None	No IPR available	PANTHER	PTHR12081:SF83	TRANSCRIPTION FACTOR E2FB	coord: 19..257
IPR003316	E2F/DP family, winged-helix DNA-binding domain	SMART	SM01372	E2F_TDP_2	coord: 140..205 e-value: 8.0E-35 score: 131.7
IPR003316	E2F/DP family, winged-helix DNA-binding domain	PFAM	PF02319	E2F_TDP	coord: 142..205 e-value: 4.7E-26 score: 90.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 135..207 e-value: 1.2E-29 score: 103.7
IPR015633	E2F Family	PANTHER	PTHR12081	TRANSCRIPTION FACTOR E2F	coord: 19..257
IPR037241	E2F-DP heterodimerization region	SUPERFAMILY	144074	E2F-DP heterodimerization region	coord: 217..257
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 140..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G013090.1	CmaCh02G013090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding