CmaCh02G012860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein
Location	Cma_Chr02: 7546610 .. 7551900 (+)
RNA-Seq Expression	CmaCh02G012860
Synteny	CmaCh02G012860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTTTGTAATAATTGAGATTTTAAGGTTTAACATTTGGTTTTTGTTTGATATCCACACAATAATTCCCTCCAAAAATCCCCATCTTCTTCTTTTCTGCTAATTCGTAATTCAAGCCTTGAGACCGGCCATTAAATACATGGGTCTCTCCTTCTCTTGTTTATGCACACAAACTGTTTGATGAATTGCCTAAGAGAGGGATTGAAGGCGATTGAGAGCTCTGTGGGTGGTGGTGGTGGTGAAGGATTTGATGATGGTCCTGTGATGAAGAACACGACTTGCTTTTGAAGTTTGAGGTGAGAAGAAAGGACCCCACCTTCTTCATTTCTTTTTATCTGCTCTTCTTCTTTGTAGCCACCATTATCTCCGCCACTAGTTCTAGATCTCCTAGTCGTTGTCTGTTGTGTGTCATTTCTATATTTCTTACAATTTTAAGGTGTTGGGTGCACCTAATTGTGGCTTATCTGCCAACAACTCCGATCTGTTTTTCCACCTTATTCTTTTGGTTTAGCTCTTTTTTAAGAAACAAAATCAGGGATTTTGGAGATATGGGTCATTGCATCTAGACTCTTATAGCTTTATTATCATTGTTTATTTATTTTTTTCGCTTATTGGGACTCTCCAGGTGTCAGGAAACCACCATAGATTTGAGACTGCCCCACCCAATCGACAAGTTTCAGTCATGGGTTCATCCAATAGAACCAATTTAGCTCACTTGGCCCTGTTTTTTATTTGAATGTCAGCTGGGTTTGGGCGTCTGTATGTTCGAATGCTTTAAAGGAAGAAAGATTAAGAAGCTGAGGGAGCTGTTCAAACTTTCTTTTGGTTCCTGGACTGGTGAAGTGAAGCCAACTTTCCCCACAAAAGTTTGTCTTGTGAGGTGGCTCAAGGCCCTCTAGTTTGCTCTGTTAAACTTCAACGTGGAGCCCACCCTTGGGGTTGGTGGGCTTCTTTGAACCAATTGAAACCCACATTTGAAAGGTGCCACAGGATCCCATAGGCCACATTGAACTTCCTTTTTTTGCCTTTCTTAATGATCAAGGAGGAAGAAGAAAAAGGGGCTTCATTTCAGTATTATTCCCCTCATTAACACTGTATTCCCACAATTGGGTTCTTCCATTCATCTTCCCCCTGTCTTTTATGCTAAATCCATTTTTTTATCCATAAAAGAAAGTACCTCTTTTCTGATGCTTCTTTGTTTCTTCCTCACTTGCCTCTCCTTCCTCCTCTTTATAAAGTCCCTCCCCCTCAAACCACTCCCACTATGGGCATATGAGATGAGGCTCTTGCCCCACTGGTTCTGGAAAGAATTATCATTCTTTCCCATATACAAGGTGATCAAGAACAGTCTTTGTACATATCTTTTTAGTATTCCATCGAGGATGTCCTTGAAAAAGAAATATCTTTCAAAAATAGAGAATGTTGAGGAAAACAGTGAGATGTCGGTGTTGGACTTGCCAGAATTGGTCTTGGAAGGCATTCTAGAGAGACTTCCACCGGGCGCTCTATGTAGTATGGCGGGTGTTTGTAGTTCATTGAGAGAGAGATGTATAAGTGACCGTCTTTGGGAGAAGCACATACAACGAAAATGGGGTAAAGTTATTGGTCAAGCTGCTTACAGAGAGTGGCAATGGTATCTTGCTTCTAGAGCTGGTGCAAGTAATCTTAAGCAAAACAAGCAGAAGAGCATTATTAGACTTTTGTCTTTTGGTTGGTCTCTTTCATGGATCAGATCCAAGGCTAATGACAATAACACGCAACGAAATTCGCTGCCGGTTGATTCAATCATGTCTTGGTATCTTGCGCTTGAGACTGGCAGATTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGGTAAACGACTCGTAATCGTATGCTTCCAGTTGTGAACAAGTCTTTTCTATGTATTCAGATTTCCCCGCTTCCTGTGATGAAGTGTTTAGCTCTATCTGATCTGAATAGTTAATAGTTAACTGTGTATTGGGCTGGTGGCCTTTTCAAAGTATTGTACCTGATATTTGAAGTATTCAATTATGCAGAATGGCCATGTTGGTTTCATGTTGTCTTGTTATGATGCAAAGCTTTGCTATGATCCCCACACGGACACCTTCCAAGCGAGGTGATTAAGCAAACACCCTCTGTCTAACTCGACCGCATCAATTATTGCCCTGTTTTCTTTTACAGATCTTTCAATTGAGAAAATGTACTCTTTCTTACAGGTACCCTCCACATGGCAGGCGTGCAATCGCAATTGAGAATGGCGTGCAATGGGAGAGGCTTAGAGCACCGCCCATCGATACTCCTCCACACGATCTTCATATCTCAGACTGTTTGAATGAATTGTGCCCTGGTGACCATATTGAGATACAGTGGAGAAAAAACAAAGAATTCCCTTATGGTTTGTTCTTCAGCCTAGATCTCTTTTGAGCTTTTTTGCAATTTATCTATTGAATTTCTACCTGTTCTGAGTCCTAGTTCAAACCATCCCCTTTCGACTTGTTCGTCTAAATCAAGGTATTACAGTTTGACGAAAGGTCATGGAAGCAAAAGGAAAAGACCCATACGAACATAGAAATGGAAAGACTAAATAGTCGGTCAATCGTCTATCAAAATTAGCTCGTTTTTTGTTTCTTTGGGAACAGAAAGTTCTTTTTATAATATAAGAACTTTGTTTCACGTAATAAGAACCGTTACTGTTGTAAACTTTTTATAGCGTTGCTGTGAATAGCTAATTAACTAAGGGCTCATAAACTGTGGCATATGCATTGCAGGTTGGTGGTATGGCGTTGTAGGTCACTTGGAAACATGTGATGGAAATGCTACTCACTGCAGATGTCATTATAGTGGTGAGTTTTCTTCACAACTTCTAGTTTGATCATTTATTTTGGATTGTTGTTTGTTCTATGGAAGTTCAAGCAGAGTTACTGATCATTGAGCTAGTTCTGAAATCTTTATTATAAGATTCAACTCAAAATAGAAACCAATTTTCATAATTTAAACGAAAAAACAAGGCATAAAGAATAAAGAAACCCCACAAAAAGAGTGGACATAGCCACTTAAGAACACAGAGAGGCCTCCCCGCTTCTCCTTTGTCTTAGAAGTAGTTGTTTTCTGAACCTTCAGTTACTTGTAGTCTGAGGTATTATAAGCCATTCTTCGTTGTTTTGATGAGTCATTACTTGACCTGCACTGGCATGGGCAGAAGTCAGTTTGTATGGGTCGCTGTTTCAGAACCCTATCGAAAAGCATCTCATTTTTAAAATGTGGGCCAAAACTTTTTATGCTATTTGATTGGTCCCCTAGACATTATTGTCAGTATGCCATCATTTCTACCAACATATTCATAGCTTTTGTCCCAGTGGAATGCTTGTGTCCAACCACTGATCTATTGAATTGTCTTAGTGGAGCTTTTATGGCCAACCACTCTGAGGTAACTGAACACTGCCCAAGCCTTTGTTGATTTTAACAATTGGGAAATTAATGCAGTCCGGAGATAGAAAAGGACCTAAGGACCTCCTTTTAAAGAAAAAAAAAACGAACTTGTTTAACTCGCTCGGCCTTCGAAACAAAGGTGACTTTATTCACGTGTTGGACCATATGGCTAGTTATATATATACTAGAATATTTGCAACGATTGGAAAGACAAAACCGATCGAGAGGAAAGTTTCTTTTATGTTTGGCGCTTTTCCATTGGATATAGATTGTACTAGCAACACGAGAGGGGGAATTCTACCCTCTGATCATTTAGTTGAGAGTATAATGCTTTAACTAATTGAGCTTGAGCTATCCTTGGGTTGGGTAGTTCAGTGCTGGAGTGTTGGTTTCTCTTTACTCTTAAAAGTTATCCACTAGGTGCAGCTGGTTTGTACTTTGTTTTTTTCTACCTTTTTCAGTCCTTTTGGTTAAGATGAACTTTATTGCTACTTTTTCAAAATAATCACTACTTATCTGCATCTGGGATCAATATAATGGGACAACTACTTGATGACAAATATTTGGAAATAGGACCGTAGTAGTGTAATGTCCCAGATCCACTGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTTGGGCTTTCCCTCAATGTGTCTGCTAGAAGAAGGTTTCTACACCCTTATAAAGGGTGATTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAACGTCCTCGCTAGCACTCGTTCCTTTCTCCAATCGATGTGGGACCACCACCAAATCCACCCCCCCATTAGGGGCCAGCGTCCTTATTGGCACACCGCATTGTGTCTACCCCCCTTCGGGGAACAGCGAGAAGGCTGGCACATCGTCCGGTGTCTAGCTCTGATACCATTTGTAACGACCTAGGCCCACCGCTAGCAGATATTGTCCTCTTTTGGCTTTCTCTTTCGGACTTCCCCTCAAGGTTTTAGAACGCGTCTGCTAGGGAAAAGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCTCAACCAATGTGGAACCAATGTGGAAGTAGATATCCTAGTAGGCTAAGAATCTGTGACTTCAAAAGCATTTAAGTTCCATCAGCTTAAGATTTTGAAATCATCATTTCTGTTATGAATATTGGTAAGAACTTGGTGTTCATCAGTGACTTCTTCCATCATCAAAGTTCAAGTTGTGTGGTTATCATATGAAAGTGTAGAAGTGGTTGCTGATATGTGAAATTTTGTGAACAGAAACTGTGGTGCTGGAGTTCAACCAGTACACCCCTGGATCAAGATGGAGACTCGCAGCCATCAACCGAAAGGACCATCGAGAGGAAGGCAACGAGATCGACGGGTTCTACGGAGGAATCCGAAAGCTTTGCTCCGATCAAGAAATCTCAATGTGGAAACAACTTTGGCCTACAGACATCTTGGAGTAGGTAGGAGCTTGGTGCCCCTTCACACCTCTTGAGCTTGGAGCTCATGCTTCTTCTTCTTCTTCTTCCTCTGCGTAATCTAATTACTCTGTTTCAAGGGATGTGAAGAAAGTGATTTTAGGAACAGCAAAAGAATATAGGCTTTCTGTTTAGATTCAGTAGTGTGAAGACTGTAGCTGTCTACTCTTCCTTCCACTTTGATAATCTAATAATCTATTGCTTTAAATATCATTTTGTTTCTGGTGGGAATGTCGTCGCTTATATGATTGGCTCCCACTCATGACCAAATTTTGATGCTAAACAAACAACGGTGTGATATTCGAGAGGAGAAATAAGCATTATTTATATGGG

mRNA sequence

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTTTGTAATAATTGAGATTTTAAGGTTTAACATTTGGTTTTTGTTTGATATCCACACAATAATTCCCTCCAAAAATCCCCATCTTCTTCTTTTCTGCTAATTCGTAATTCAAGCCTTGAGACCGGCCATTAAATACATGGGTCTCTCCTTCTCTTGTTTATGCACACAAACTGTTTGATGAATTGCCTAAGAGAGGGATTGAAGGCGATTGAGAGCTCTGTGGGTGGTGGTGGTGGTGAAGGATTTGATGATGGTCCTGTGATGAAGAACACGACTTGCTTTTGAAGTTTGAGGTGTCAGGAAACCACCATAGATTTGAGACTGCCCCACCCAATCGACAAGTTTCAGTCATGGGTTCATCCAATAGAACCAATTTAGCTCACTTGGCCCTGTTTTTTATTTGAATGTCAGCTGGGTTTGGGCGTCTGTATGTTCGAATGCTTTAAAGGAAGAAAGATTAAGAAGCTGAGGGAGCTGTTCAAACTTTCTTTTGGTTCCTGGACTGGTGAAGTGAAGCCAACTTTCCCCACAAAAGTTTGTCTTGTGAGGTGGCTCAAGGCCCTCTAGTTTGCTCTGTTAAACTTCAACGTGGAGCCCACCCTTGGGGTTGGTGGGCTTCTTTGAACCAATTGAAACCCACATTTGAAAGGTGCCACAGGATCCCATAGGCCACATTGAACTTCCTTTTTTTGCCTTTCTTAATGATCAAGGAGGAAGAAGAAAAAGGGGCTTCATTTCAGTATTATTCCCCTCATTAACACTGTATTCCCACAATTGGGTTCTTCCATTCATCTTCCCCCTGTCTTTTATGCTAAATCCATTTTTTTATCCATAAAAGAAAGTACCTCTTTTCTGATGCTTCTTTGTTTCTTCCTCACTTGCCTCTCCTTCCTCCTCTTTATAAAGTCCCTCCCCCTCAAACCACTCCCACTATGGGCATATGAGATGAGGCTCTTGCCCCACTGGTTCTGGAAAGAATTATCATTCTTTCCCATATACAAGGTGATCAAGAACAGTCTTTGTACATATCTTTTTAGTATTCCATCGAGGATGTCCTTGAAAAAGAAATATCTTTCAAAAATAGAGAATGTTGAGGAAAACAGTGAGATGTCGGTGTTGGACTTGCCAGAATTGGTCTTGGAAGGCATTCTAGAGAGACTTCCACCGGGCGCTCTATGTAGTATGGCGGGTGTTTGTAGTTCATTGAGAGAGAGATGTATAAGTGACCGTCTTTGGGAGAAGCACATACAACGAAAATGGGGTAAAGTTATTGGTCAAGCTGCTTACAGAGAGTGGCAATGGTATCTTGCTTCTAGAGCTGGTGCAAGTAATCTTAAGCAAAACAAGCAGAAGAGCATTATTAGACTTTTGTCTTTTGGTTGGTCTCTTTCATGGATCAGATCCAAGGCTAATGACAATAACACGCAACGAAATTCGCTGCCGGTTGATTCAATCATGTCTTGGTATCTTGCGCTTGAGACTGGCAGATTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAATGGCCATGTTGGTTTCATGTTGTCTTGTTATGATGCAAAGCTTTGCTATGATCCCCACACGGACACCTTCCAAGCGAGGTACCCTCCACATGGCAGGCGTGCAATCGCAATTGAGAATGGCGTGCAATGGGAGAGGCTTAGAGCACCGCCCATCGATACTCCTCCACACGATCTTCATATCTCAGACTGTTTGAATGAATTGTGCCCTGGTTGGTGGTATGGCGTTGTAGGTCACTTGGAAACATGTGATGGAAATGCTACTCACTGCAGATGTCATTATAGTGAAACTGTGGTGCTGGAGTTCAACCAGTACACCCCTGGATCAAGATGGAGACTCGCAGCCATCAACCGAAAGGACCATCGAGAGGAAGGCAACGAGATCGACGGGTTCTACGGAGGAATCCGAAAGCTTTGCTCCGATCAAGAAATCTCAATGTGGAAACAACTTTGGCCTACAGACATCTTGGAGTAGGTAGGAGCTTGGTGCCCCTTCACACCTCTTGAGCTTGGAGCTCATGCTTCTTCTTCTTCTTCTTCCTCTGCGTAATCTAATTACTCTGTTTCAAGGGATGTGAAGAAAGTGATTTTAGGAACAGCAAAAGAATATAGGCTTTCTGTTTAGATTCAGTAGTGTGAAGACTGTAGCTGTCTACTCTTCCTTCCACTTTGATAATCTAATAATCTATTGCTTTAAATATCATTTTGTTTCTGGTGGGAATGTCGTCGCTTATATGATTGGCTCCCACTCATGACCAAATTTTGATGCTAAACAAACAACGGTGTGATATTCGAGAGGAGAAATAAGCATTATTTATATGGG

Coding sequence (CDS)

ATGCTTCTTTGTTTCTTCCTCACTTGCCTCTCCTTCCTCCTCTTTATAAAGTCCCTCCCCCTCAAACCACTCCCACTATGGGCATATGAGATGAGGCTCTTGCCCCACTGGTTCTGGAAAGAATTATCATTCTTTCCCATATACAAGGTGATCAAGAACAGTCTTTGTACATATCTTTTTAGTATTCCATCGAGGATGTCCTTGAAAAAGAAATATCTTTCAAAAATAGAGAATGTTGAGGAAAACAGTGAGATGTCGGTGTTGGACTTGCCAGAATTGGTCTTGGAAGGCATTCTAGAGAGACTTCCACCGGGCGCTCTATGTAGTATGGCGGGTGTTTGTAGTTCATTGAGAGAGAGATGTATAAGTGACCGTCTTTGGGAGAAGCACATACAACGAAAATGGGGTAAAGTTATTGGTCAAGCTGCTTACAGAGAGTGGCAATGGTATCTTGCTTCTAGAGCTGGTGCAAGTAATCTTAAGCAAAACAAGCAGAAGAGCATTATTAGACTTTTGTCTTTTGGTTGGTCTCTTTCATGGATCAGATCCAAGGCTAATGACAATAACACGCAACGAAATTCGCTGCCGGTTGATTCAATCATGTCTTGGTATCTTGCGCTTGAGACTGGCAGATTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAATGGCCATGTTGGTTTCATGTTGTCTTGTTATGATGCAAAGCTTTGCTATGATCCCCACACGGACACCTTCCAAGCGAGGTACCCTCCACATGGCAGGCGTGCAATCGCAATTGAGAATGGCGTGCAATGGGAGAGGCTTAGAGCACCGCCCATCGATACTCCTCCACACGATCTTCATATCTCAGACTGTTTGAATGAATTGTGCCCTGGTTGGTGGTATGGCGTTGTAGGTCACTTGGAAACATGTGATGGAAATGCTACTCACTGCAGATGTCATTATAGTGAAACTGTGGTGCTGGAGTTCAACCAGTACACCCCTGGATCAAGATGGAGACTCGCAGCCATCAACCGAAAGGACCATCGAGAGGAAGGCAACGAGATCGACGGGTTCTACGGAGGAATCCGAAAGCTTTGCTCCGATCAAGAAATCTCAATGTGGAAACAACTTTGGCCTACAGACATCTTGGAGTAG

Protein sequence

MLLCFFLTCLSFLLFIKSLPLKPLPLWAYEMRLLPHWFWKELSFFPIYKVIKNSLCTYLFSIPSRMSLKKKYLSKIENVEENSEMSVLDLPELVLEGILERLPPGALCSMAGVCSSLRERCISDRLWEKHIQRKWGKVIGQAAYREWQWYLASRAGASNLKQNKQKSIIRLLSFGWSLSWIRSKANDNNTQRNSLPVDSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAKLCYDPHTDTFQARYPPHGRRAIAIENGVQWERLRAPPIDTPPHDLHISDCLNELCPGWWYGVVGHLETCDGNATHCRCHYSETVVLEFNQYTPGSRWRLAAINRKDHREEGNEIDGFYGGIRKLCSDQEISMWKQLWPTDILE

Homology

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BLAST of CmaCh02G012860 vs. ExPASy Swiss-Prot
Match: Q8RY82 (F-box protein At2g32560 OS=Arabidopsis thaliana OX=3702 GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.2e-115
Identity = 223/397 (56.17%), Postives = 259/397 (65.24%), Query Frame = 0


Query: 1   MLLCFFLTCLSFLLFIKSLPLKPLPLWAYEMRLLPHWFWKELSFFPIYKVIKNSLCTYLF 60
           MLL F +TCLSF  F KSL L P   WA E + L       LSF+ I     N+L     
Sbjct: 1   MLLYFLITCLSFFFFTKSLSLPP---WASETKTL-------LSFYFIKNPFMNTL----- 60

Query: 61  SIPSRMSLKKKYLSKIENVEENSEMSVLDLPELVLEGILERLPPGALCSMAGVCSSLRER 120
                   K    S + +     +MSVLDLPEL L+ IL+ LPP  LCSMA VCSSLRER
Sbjct: 61  -----HQTKHDPASPVID-----QMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRER 120

Query: 121 CISDRLWEKHIQRKWGKVIGQAAYREWQWYLASRAG--ASNLKQNKQKSIIRLLSFGWSL 180
           C+SD LWEKH++ KWGK++G AA+REWQ Y++S      S   Q       +++S   SL
Sbjct: 121 CVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSL 180

Query: 181 SWIRSKANDNNTQRNSLPVDSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAKLC 240
           S +  +        +SLP+DS MS YL+LETGRFWFPAQVYNRENGHVGFMLSCYDA+L 
Sbjct: 181 SSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELS 240

Query: 241 YDPHTDTFQARYPPHGRRAIAIENGVQWERLRAPPIDTPPHDLHISDCLNELCP------ 300
           YD HTDTFQARYPPHGRRA AIE GV W+R+RA PID  PH LH+SD L EL P      
Sbjct: 241 YDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEI 300

Query: 301 ----------GWWYGVVGHLETCDGNATHCRCHYSETVVLEFNQYTPGSRWRLAAINRKD 360
                     GWWYG+V HLE+CDG+  HC CH SETVVLEFNQYT GSRWR   I R D
Sbjct: 301 QWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMR-D 360

Query: 361 HREEGNEIDGFYGGIRKLCSDQEISMWKQLWPTDILE 380
           H+EEGNE DGFYGGIRKL   +EI+MWK+ WP  ILE
Sbjct: 361 HKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE 371

[Close]

BLAST of CmaCh02G012860 vs. ExPASy Swiss-Prot
Match: Q6NLB1 (F-box protein At2g26850 OS=Arabidopsis thaliana OX=3702 GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.5e-113
Identity = 209/396 (52.78%), Postives = 262/396 (66.16%), Query Frame = 0


Query: 1   MLLCFFLTCLSFLLFIKSLPLKPLPLWAYEMRLLPHWFWKELSFFPIYKVIKNSLCTYLF 60
           MLL   +TCLSF  F KSL     P WA + + L       LSF+    +  NSL     
Sbjct: 1   MLLYLLITCLSFFFFSKSL---SFPQWASKTKNL-------LSFYFSKYLFTNSLHQITP 60

Query: 61  SIPSRMSLKKKYLSKIENVEENSEMSVLDLPELVLEGILERLPPGALCSMAGVCSSLRER 120
            + S +                 +MS+LDLP+L L+ ILE LPP  LC+MA VCSSLRER
Sbjct: 61  DLASPVL---------------GKMSILDLPDLPLDCILELLPPSELCTMARVCSSLRER 120

Query: 121 CISDRLWEKHIQRKWGKVIGQAAYREWQWYLASRAGA-SNLKQNKQKSIIRLLSFGWSLS 180
           C+SD LWEKH++ KWGK++G +A++EWQ YL+S     S   +     + +++S   SLS
Sbjct: 121 CVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSLS 180

Query: 181 WIRSKANDNNTQRNSLPVDSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAKLCY 240
            I    +      +S+P+DS M++YL+LETGRFWFPAQVYNRENGHVGFMLSCYDA+L Y
Sbjct: 181 SIFRDDDHRRRYPSSIPLDSTMNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSY 240

Query: 241 DPHTDTFQARYPPHGRRAIAIENGVQWERLRAPPIDTPPHDLHISDCLNELCP------- 300
           D  T+TFQARYPPHG+RAIA+E  V WER+RA P+D  PH+L++SD LNEL P       
Sbjct: 241 DTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQ 300

Query: 301 ---------GWWYGVVGHLETCDGNATHCRCHYSETVVLEFNQYTPGSRWRLAAINRKDH 360
                    GWWY VVGH+E+CDGN  HC+CH SE +VLEFNQYT GSRWR   INR+DH
Sbjct: 301 WRRNKEFPYGWWYSVVGHMESCDGNLNHCQCHNSEMMVLEFNQYTVGSRWRKTMINRRDH 360

Query: 361 REEGNEIDGFYGGIRKLCSDQEISMWKQLWPTDILE 380
           RE+GNE DGFYGGIRK+   ++I MWK+LWP+ ILE
Sbjct: 361 REKGNEEDGFYGGIRKINCKEDIEMWKRLWPSSILE 371

[Close]

BLAST of CmaCh02G012860 vs. ExPASy Swiss-Prot
Match: Q6NKN8 (F-box protein At2g41170 OS=Arabidopsis thaliana OX=3702 GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 5.2e-95
Identity = 166/337 (49.26%), Postives = 224/337 (66.47%), Query Frame = 0


Query: 66  MSLKKKYLSKIENVEENSEMSVLDLPELVLEGILERLPPGALCSMAGVCSSLRERCISDR 125
           ++ +K+   K +N E+ ++MS+LDLP+L L+ ILE+L P  LC+M  VCS LR++C+SD 
Sbjct: 38  LTWRKETKRKKKNQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDH 97

Query: 126 LWEKHIQRKWGKVIGQAAYREWQWYLAS-----RAGASNLKQNKQKSIIRLLSFGWSLSW 185
           LWEKH++ KWG+++G AA +EW+ ++A+      + +S+ +++K     R ++     +W
Sbjct: 98  LWEKHMETKWGRLMGDAAIQEWKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAW 157

Query: 186 IRSKANDNNTQRNS--LPVDSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAKLC 245
           + S     N   +S   P+DS+M WY  LE G+FWFPAQVYNRENGHVGFM+SCYDAK+ 
Sbjct: 158 LSSNHGCENRGSSSYLAPIDSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIR 217

Query: 246 YDPHTDTFQARYPPHGRRAIAIENGVQWERLRAPPIDTPPHDLHISDCLNELCP------ 305
           YD  TDTFQARY  HGRR  A E  V W+RLR    DT   DLH+SDCL+ L P      
Sbjct: 218 YDFKTDTFQARYSAHGRR--AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEI 277

Query: 306 ----------GWWYGVVGHLETCDGNATHCRCHYSETVVLEFNQYTPGSRWRLAAINRKD 365
                     GWW+G+VGHL+ CDG   +CRC   E VV+EF Q+ P S WR   I RKD
Sbjct: 278 QWRRTKEFPYGWWFGIVGHLQNCDG-VQNCRCDSDENVVMEFRQFRPESPWRRTVIKRKD 337

Query: 366 HREEGNEIDGFYGGIRKLCSDQEISMWKQLWPTDILE 380
           HRE GNE +GFYGG++KL +++EIS WKQLWP+  LE
Sbjct: 338 HRETGNEENGFYGGVKKLGTEEEISTWKQLWPSQALE 371

[Close]

BLAST of CmaCh02G012860 vs. TAIR 10
Match: AT2G32560.1 (F-box family protein )

HSP 1 Score: 417.9 bits (1073), Expect = 8.5e-117
Identity = 223/397 (56.17%), Postives = 259/397 (65.24%), Query Frame = 0


Query: 1   MLLCFFLTCLSFLLFIKSLPLKPLPLWAYEMRLLPHWFWKELSFFPIYKVIKNSLCTYLF 60
           MLL F +TCLSF  F KSL L P   WA E + L       LSF+ I     N+L     
Sbjct: 1   MLLYFLITCLSFFFFTKSLSLPP---WASETKTL-------LSFYFIKNPFMNTL----- 60

Query: 61  SIPSRMSLKKKYLSKIENVEENSEMSVLDLPELVLEGILERLPPGALCSMAGVCSSLRER 120
                   K    S + +     +MSVLDLPEL L+ IL+ LPP  LCSMA VCSSLRER
Sbjct: 61  -----HQTKHDPASPVID-----QMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRER 120

Query: 121 CISDRLWEKHIQRKWGKVIGQAAYREWQWYLASRAG--ASNLKQNKQKSIIRLLSFGWSL 180
           C+SD LWEKH++ KWGK++G AA+REWQ Y++S      S   Q       +++S   SL
Sbjct: 121 CVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSL 180

Query: 181 SWIRSKANDNNTQRNSLPVDSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAKLC 240
           S +  +        +SLP+DS MS YL+LETGRFWFPAQVYNRENGHVGFMLSCYDA+L 
Sbjct: 181 SSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELS 240

Query: 241 YDPHTDTFQARYPPHGRRAIAIENGVQWERLRAPPIDTPPHDLHISDCLNELCP------ 300
           YD HTDTFQARYPPHGRRA AIE GV W+R+RA PID  PH LH+SD L EL P      
Sbjct: 241 YDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEI 300

Query: 301 ----------GWWYGVVGHLETCDGNATHCRCHYSETVVLEFNQYTPGSRWRLAAINRKD 360
                     GWWYG+V HLE+CDG+  HC CH SETVVLEFNQYT GSRWR   I R D
Sbjct: 301 QWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMR-D 360

Query: 361 HREEGNEIDGFYGGIRKLCSDQEISMWKQLWPTDILE 380
           H+EEGNE DGFYGGIRKL   +EI+MWK+ WP  ILE
Sbjct: 361 HKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE 371

[Close]

BLAST of CmaCh02G012860 vs. TAIR 10
Match: AT2G26850.1 (F-box family protein )

HSP 1 Score: 411.0 bits (1055), Expect = 1.0e-114
Identity = 209/396 (52.78%), Postives = 262/396 (66.16%), Query Frame = 0


Query: 1   MLLCFFLTCLSFLLFIKSLPLKPLPLWAYEMRLLPHWFWKELSFFPIYKVIKNSLCTYLF 60
           MLL   +TCLSF  F KSL     P WA + + L       LSF+    +  NSL     
Sbjct: 1   MLLYLLITCLSFFFFSKSL---SFPQWASKTKNL-------LSFYFSKYLFTNSLHQITP 60

Query: 61  SIPSRMSLKKKYLSKIENVEENSEMSVLDLPELVLEGILERLPPGALCSMAGVCSSLRER 120
            + S +                 +MS+LDLP+L L+ ILE LPP  LC+MA VCSSLRER
Sbjct: 61  DLASPVL---------------GKMSILDLPDLPLDCILELLPPSELCTMARVCSSLRER 120

Query: 121 CISDRLWEKHIQRKWGKVIGQAAYREWQWYLASRAGA-SNLKQNKQKSIIRLLSFGWSLS 180
           C+SD LWEKH++ KWGK++G +A++EWQ YL+S     S   +     + +++S   SLS
Sbjct: 121 CVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSLS 180

Query: 181 WIRSKANDNNTQRNSLPVDSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAKLCY 240
            I    +      +S+P+DS M++YL+LETGRFWFPAQVYNRENGHVGFMLSCYDA+L Y
Sbjct: 181 SIFRDDDHRRRYPSSIPLDSTMNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSY 240

Query: 241 DPHTDTFQARYPPHGRRAIAIENGVQWERLRAPPIDTPPHDLHISDCLNELCP------- 300
           D  T+TFQARYPPHG+RAIA+E  V WER+RA P+D  PH+L++SD LNEL P       
Sbjct: 241 DTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQ 300

Query: 301 ---------GWWYGVVGHLETCDGNATHCRCHYSETVVLEFNQYTPGSRWRLAAINRKDH 360
                    GWWY VVGH+E+CDGN  HC+CH SE +VLEFNQYT GSRWR   INR+DH
Sbjct: 301 WRRNKEFPYGWWYSVVGHMESCDGNLNHCQCHNSEMMVLEFNQYTVGSRWRKTMINRRDH 360

Query: 361 REEGNEIDGFYGGIRKLCSDQEISMWKQLWPTDILE 380
           RE+GNE DGFYGGIRK+   ++I MWK+LWP+ ILE
Sbjct: 361 REKGNEEDGFYGGIRKINCKEDIEMWKRLWPSSILE 371

[Close]

BLAST of CmaCh02G012860 vs. TAIR 10
Match: AT2G41170.1 (F-box family protein )

HSP 1 Score: 349.4 bits (895), Expect = 3.7e-96
Identity = 166/337 (49.26%), Postives = 224/337 (66.47%), Query Frame = 0


Query: 66  MSLKKKYLSKIENVEENSEMSVLDLPELVLEGILERLPPGALCSMAGVCSSLRERCISDR 125
           ++ +K+   K +N E+ ++MS+LDLP+L L+ ILE+L P  LC+M  VCS LR++C+SD 
Sbjct: 38  LTWRKETKRKKKNQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDH 97

Query: 126 LWEKHIQRKWGKVIGQAAYREWQWYLAS-----RAGASNLKQNKQKSIIRLLSFGWSLSW 185
           LWEKH++ KWG+++G AA +EW+ ++A+      + +S+ +++K     R ++     +W
Sbjct: 98  LWEKHMETKWGRLMGDAAIQEWKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAW 157

Query: 186 IRSKANDNNTQRNS--LPVDSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAKLC 245
           + S     N   +S   P+DS+M WY  LE G+FWFPAQVYNRENGHVGFM+SCYDAK+ 
Sbjct: 158 LSSNHGCENRGSSSYLAPIDSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIR 217

Query: 246 YDPHTDTFQARYPPHGRRAIAIENGVQWERLRAPPIDTPPHDLHISDCLNELCP------ 305
           YD  TDTFQARY  HGRR  A E  V W+RLR    DT   DLH+SDCL+ L P      
Sbjct: 218 YDFKTDTFQARYSAHGRR--AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEI 277

Query: 306 ----------GWWYGVVGHLETCDGNATHCRCHYSETVVLEFNQYTPGSRWRLAAINRKD 365
                     GWW+G+VGHL+ CDG   +CRC   E VV+EF Q+ P S WR   I RKD
Sbjct: 278 QWRRTKEFPYGWWFGIVGHLQNCDG-VQNCRCDSDENVVMEFRQFRPESPWRRTVIKRKD 337

Query: 366 HREEGNEIDGFYGGIRKLCSDQEISMWKQLWPTDILE 380
           HRE GNE +GFYGG++KL +++EIS WKQLWP+  LE
Sbjct: 338 HRETGNEENGFYGGVKKLGTEEEISTWKQLWPSQALE 371

The following BLAST results are available for this feature:

BLAST of CmaCh02G012860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RY82	1.2e-115	56.17	F-box protein At2g32560 OS=Arabidopsis thaliana OX=3702 GN=At2g32560 PE=2 SV=1	[more]
Q6NLB1	1.5e-113	52.78	F-box protein At2g26850 OS=Arabidopsis thaliana OX=3702 GN=At2g26850 PE=2 SV=1	[more]
Q6NKN8	5.2e-95	49.26	F-box protein At2g41170 OS=Arabidopsis thaliana OX=3702 GN=At2g41170 PE=2 SV=1	[more]

BLAST of CmaCh02G012860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32560.1	8.5e-117	56.17	F-box family protein	[more]
AT2G26850.1	1.0e-114	52.78	F-box family protein	[more]
AT2G41170.1	3.7e-96	49.26	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 90..130 e-value: 0.001 score: 28.4
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 85..131 e-value: 2.8E-8 score: 33.4
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 84..130 score: 10.7692
None	No IPR available	GENE3D	1.20.1280.50		coord: 72..170 e-value: 1.8E-7 score: 33.0
None	No IPR available	PANTHER	PTHR31482:SF2	ESTS AU081301(E20138)	coord: 3..379
None	No IPR available	PANTHER	PTHR31482	ESTS AU081301(E20138)	coord: 3..379
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 87..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012860.1	CmaCh02G012860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding