CmaCh02G012850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pre-rRNA-processing protein las1
Location	Cma_Chr02: 7534189 .. 7541149 (+)
RNA-Seq Expression	CmaCh02G012850
Synteny	CmaCh02G012850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGTTCCCTATAGAAGTCCACAACCGCGCCTCAGTGACCTTTTTCCCTCTAGCGGGTTCGCCGGCGTCGGCCATCGTTCTCAAGTTGCTGGTTTCACTGCACGTCTTCTCCATTGATCTTTGATCCTTTTTTCTTATTTGTTTGCGGAACGTTCGGGTGCTATCCTTGCATGTGAAGACGCCTAGTTACTTTAGCAGTAGGTTTTGATGGAATCGCTGTTAGGATTTGAAGAAGTACCAGTGGAGACTGAAGAAGATAATTCGTCGACGTACAGCCGAAAATTGGTACCCTGGTCGACTTGGAGCGAGTGGCTTTTTGTTAGTCAATCACTCTTCTCTGACTCTTCTGACTCCGTCGCCGCCGCTCTGGGAAGAGTAAGCTTACTTTCTAAGGATAGTTACTCGACCTATCTCCGCCGCATGTTTTTTCTCCATTATGCTAATTCTTGAAGTTACATTTCAGTCTGTAATTGTAAATTTCAGTATGCTGCACTTTTGTAACCGGCTTGATTACGTTAGATTCTCCATGATGCATGTAGCCAAATTTCCTGGTCTCAGTACCCTCCATCCATCCTTTTCTGGATTCGAGGTGCTAGTTTTCTTATTTGTGGCTTACGTGTTTTGTTTTTGAATCTAGATATCAACATGGAGAAGCAGAGGCTGTCTTCCAGTCGTCGTTGAAGTGACAGCATCTATAATCGAAATCCAACAAAAGGATCCCTACTTCACGTATGCTTCAATTCTCACTTTTCACCAACTTCTTTTGTGGTTATATTCACCAATTATACTGTTTCCTACTCGAGCTATTTCCTGTAGTTCTTTACCGTCATGTTTGTCAGCTTTCGTACCATGTTAAAAAGGAGAATGAAAGTGGAAGCGCACATTTTGAGATTAGAATTTACGAGCGATAGTTTTAATTTCAAAACAATTAATTTTAATTAATGGTTATTCAATAGATCGCTAACAATCAAGTTGTGTATTGACCATTTCCTTCTTTTGGGTCTGTCAGTAATATTAACGAACGTTACCATGTGTTTGAGTACAGATACTTTTTGAATCCAAGATTATATGGTGTTTTTATGTGGAAACTACTATTGGCATTCATTAGTTTCTGTTATTCATTCGTTGTAGAAAGAACCAATCGGTGGATGCTTCAGTTCGTGGTACAGAGGAACCATTAAATAGTGTTTCACTTTCAGAGGAAGCGTTAGCCATGTTATATTGCATGGCCATTATGAGGTAATTTTTTTTTTCTTTTATTGTAAGTTACGAGGTGAAATTTCTTAATTTTTTACTCTTTATTCTGACCCTCTAAGTCTGATTAACTAAAGATTATCATATGGTGAACTTTTTTTGTATTACGTATTAAAAAAGTAGTGTTGCTGTTAGTTTTTAAGACGAATACTGAAGTATCAACCTATTGGTGCAAAGTTCTCGCTTCCTAGAATGTCAATGCCATTGTTCATTTATATGACTTAGTTTTAGGGAAGTATTTTGAATTTTATGGTCTCGAACTGATTACATGAAATCCAGAGTAGCCATATTGAAAATACAGTCAATTATATTGTTGAAATGTGTCTTCCGTTAACCTATTCGCATTAACTGTACAAGTCTGTAGTAAGAGGTTCCATAACATGAAAATACTCATTCGACATGCTTCACTTTGGACTGATTGAAGTAAGTTAAGATAGAGCTTGCTGAAGGTAAACATTTCTTCTGAAGAATCACAAAGAACTCACTGCATTCTTTGTTTTAAAGGCTTGTAAATGGTGTTGTTGAGAAGACACGCAAGAAAACAGAGGTTTCAATTGCTGTGGCAGCTGATGCTATTGGTTTGCCTCGTGTACTGATTGATATTCGTCATGGTGAGTACCACCAAAGATCATTTTGTGTGCTATTATTCTTTTTTTTTCTTTCCAGTTTTATGAGCTTCTTTCTCAAAGTTATATGATCTTCGTATATATGCTGCAAATGTGACAAAACCACTTGTCAGTTGTACTGTTCTTTGATTTTTTTGCAACATCATCCATTCTCAATAATAGGTTGCCTATAATTAATTGATTGTAATTAGTTTTATATTTCTCTTGGCAATGATTATAGAGGGTTCTCATCGTGAACTTCCAGCTCTTCAGGTGGTTCGGTGTGCCTCAATCAAGGTATGACTTTGAAGTATGAACTCTTAACATTCTTGTTTTTTCACATTTTAATGGCTTTCAACTTTATTTGCTCCTTTTCTTTTTAATGATTAATCTCTATTTATGATAGTTTCACTTAGCATCATTCAAAGTGGAATAATAAATCATTAACAAATTTACAAATGTGCCTGTTCTATCCTTTCTGCATTTCGTTTGCGGCAGTTTGTACTTGAATATATCATTTCTCTATAGATTTTTTTTTAAACAGTAGAAGATTAACTGAGATGGGAAGTAAACTGAAGCCTTCTTGATTTTTGGTGATTTCAGGCACTTCATTGGTTGAAATCTTATTATTGGGAACCTCAGGAAAAAGCAATTCCATTTCTAGGTGATATAAGTACTACCATTAGAAAAGAAATCAAATCCAGACTTCGTGATTTGGCTTTCAACTTAAATGAGAAGCAAAATTCTCAACGTGGATCAGTGGTCAAGCCAAAACGTACGTGTTTATTTTCTCCCTTTTAAAGGCCATATTTTATATTTTACTTTTTTTATTACTATCGTAATGTGTCTTAAATGGTTTTGTTTCTAGTTTTAACTAATTTGTGGCTGACTTGAATTTCATCTTAAATGGGAGATCTTGAGATGAGACAGATTATTAAGGATTGCTAGATCAATACTATTGCATCCAACAATAGACAGGAGGAGGAGATAATTATTGAATTTTCTAGTCTTGGTTAATGGCATGGTGTTTTTGGCTTTCCATGTTGTTCAAATAAGGATATTTACTAGTTATTTTTTTCTTTTTGAAAAGAATTAGAAGTTTCATACCCACCATGGGTTAACTTAGGCTTATAAAAATGCCCGGTAAATAGTAAAAGACTTTGAGGGAATGAGTTCAAGTTATGGTTACCACCTATTAAGGGTTTAATATCCTATAGGTTACCTTTGTAATCAAATGTAGTAAAGTTGGACAATTGTTCCATTAGAATAGTCGAAGTGCTTATAAACTAGCCTAGACACTCACAGATATCAAAAACGAAAAAAGAAAAAGAAAATAATTAAGTGGTAAATAATCCAATCCAAGAATCTCCAAGGACTTTTAGGGATTGAAAGGAGGTTTGTTCATTGGCTAGGTTTAACACTTCTAACTCAACATCGGTCTCCAAGTATTTTTGTAATTACCTGTAGGTCTTATTCTTGTAAATTAGAGCCTCCTTTTGTGTAGTTGGTTATTCGGCCACTCTGGTTTGGGGTGTCTTTCTATGTCAGTTGCATTTCTATTTCATATTCTCATACTTCTCTATGAAAGCGAGGTTTCTCATTTGAAAAAAAGAAATTAAACCAAGAACTGCACCTCTGTAGAAGCAAAGCTTGTTTAAAAATCTAGCTTAGAATTGCTTCCGAACTTAAATAAATTCTGAAGAGATTGCTGAAATAATTGAAAAGAGTACACCATGGGGAAGATTGATAATAAGATCAATTCTCTCTTGCCTTCTTGAAAACACGTCGATTCCTTTCTAACCATCCCCCAAAGTTTTAACTGTGTTGACCCGTAACACTCTTGCTTTCCTTTTCAACATGCCACCTCAAAGAAGATGATGTATTCTTTTTGGCATTCAAATAAAAAACTCATGAGCACCCATAACATTAGAGGTACATGATGGAGGACAACGGAAAGAAGTACAATTAATATATTCCCCTGCCTCTAAGAGAGCATACAACCATTGAGATTCAATGTACAAAAGGTACATCGTCTCTGTACTTTGATCACATATTACAATCTAAAGTGGTACTTTACTGATAGATGATCCATAGTTTCTCCTCCTTTTTTATTAACCCCAATTCCAAAAGGTACATTGTCTCTGTGAACCTTGGGAGATAAGAATTGGGAAATTTAGGGGCTCGTAACGAAGCCCTACTAGCTAAATGGCTTTGGCGGTTCCCTCTCGTGCCTGGTTCCCTTTGGCATAGGACTATTATGAGTAAATACAGTCTCACTCTTTTTCATCCCTAATCTGAAGTTCTGTGGTTGATTGAAGGGTACCAATTTTTTGGAGGATAAGTGGGTGGGAATAGTTCTCTCTACTCCTTGTTTACCTGCTGTTATCATCTCTCCTCTTCGTTTCCCTACTTGTATCATCTATTGTCCATGAAAAACTGTTCAGTGGCTAGTGTCTTTGATCCCTTGGGGAGCTCTCCTTTGTTGTCTCTTAGTTTTCGTCGTCCGTTGTCTAATAGGGAGACTACCAACATCTCCTCCTATCCTTGGTAGAGGGGGTTAGGCTTAGACAAGAGAAGGGATGTTCATTTTTGGAGTCTTAACCCCATTGGGTGCTTTTTTTGTAGATCTTTATTTCAGTAGTTGCTAAATCCATTTCCAGTCAAGAAGTTAGTTTTCTTGTGTTTGTGAAAGGTGAAAGTTCCAAAGACAGTTCAGTTCTTTGTTTGAAAGGTTATCCACGGTAGGGTTAATACTGCTTTCGAGAAAGATGCCTCTGTCGATTGGGCCATCTTATTGTATCTCTTGTCAGAAGACGGAGGAAGATCTCAGTCACTTGCTTTGGAGATGCGATTTTGCTTGGTCTGTTCGGTGTCCCTTTTTTGACGTGTTTGATTTTCAATTTGATGGGCACAGAGGTTCCAAGGAGATGTTCAAGGAGTTGCTTCTCCCTTTGCCTTTTCGTGAAAATAAGAGGTTTTTTGTGGATGGTGGGGATTTGTGCGAGTTTATGGGGCTTGTCGGGATGAGAAGAATAATAGAATCTTTAGGGGGATTGAGAGAGCCCATAGTGAGGTTTGGTCAATTGCCAGATTTGTCTCTTTTGGCGTCAATTTCTAAGATCTTTTGTAATCATATGCTTGGTGGTCTCATTTTACTTTATTTAAATTCTTTTCCTTAGGCGGGTTCCTTTTATGGGTTTGGTTTTTTGTATGCCTTTGCATTTTCTTCATCTTTTTCTCAATGAAGGTTCAGTTTCTTATAAAAAAAAATGTCTCAATATGAACGATTCAAAGCTCTATTACAATCCTTTCCTTGCTGCTGATGCTAACCTCAGAGCTAAAAGTTGTGCACATGTTTTCTTGTGTTTGTAATTTTGTTCTCAAGCAGTTAAATCTCCTGATTTGAAATTTATTAATTACTATAATTGAATCTCTAGATTTAAATAATAAAATGAAAATATTAATAAATAAGCCTACCTTTTCAGGTTTGAAGACAAAGACGGGCAAGACACTGAAGTTTCTTATTCAGTTATATTCTACTTTCTCTTCAGAATTTTTATCTATATTGTTGGAATTTTTGCTGAAGGCAATGAGGTCATCAGACTTGGCCTTTCCTGAAAATTCCAAAAAATCCAGAAGCACCGTATTGGAAGGTTGGAAGCTCGCGATCGCTAAGATCTCGAATAAGGAACCAGAATTGCTTTTAGATCTGCTCGAGGCAATTCTGGAGAAAATCAAGACTCAAGAAGCCTTGGAATATGGTATGGTTACATATCAACTTTAAACTTTACAGCCTTTTCCCTTTTTATTTTTCACTCTTGCCCTTTTCTTGCTTCTTCTCTCTCTTTCCTGAATGGTTCTTTAAACACGGTTTTCTTATTCAGAAGGTCAGTACTTCACGTCCTCAGATCACAAAATGAAGAGCTGTCAAGTCGCACAGCTTTCATCTTTGTTTGCATGGCTTGTTGAAAAACTCAAGGGTATAAACCTAAAGCGCAATGGAGAAGTTTCTTCTGGAAAACACATTCCGAAAGGTGTTCTAATGGAGTTGCTACGTAAATGCCTTCTGGTATCAGCTCCTGGGAACAAGCGACTTATGGATTCTGCCACTGATCTTGCACAGTTATTGGATGACGGTTCTCTAATGAAGAAACTGAACAAACTATCCTTTCTGAATCTATTGAATTCAGATATTCCCGACAAAGAAAATCCCATCCAAACCACTTCAGAAATCAGTTTAAACCACGTGGAGTCGCTCCGTGAAGCAAGTCGGAAACTGGAGATGATTAAGCTCCACAAAAGAAAGAACAACTTGGCAGCAAATCCAGTAGATGGTATTGTTGGAACTTCCACCAGGTGGACTGTGGTAAATTCATGGACCCCATGTCCAATTGGTATGTTGCCTCGTCCAATTGGCTCTTCTGGTCGTCTTCCTGTTCTTGACCTCAATCCCGAGAACGAACCAGCTTCGGAAGATCTGAGAAGCGAAGAGAACTTCGAACTCGGCAAATGTAGCCACAAGAGAGAAGCCAGTTCTGATACTCAGCAACTTGATAGCGGTACTGTCAAGAAAATGAAGGAAACAAATGGAAACTTCCAATCTGAGATAGACGATGTCGATTCACCTGAAGGTGTCAAAGGGCGCTTGTTGATAGGTGGGATATGGAAGAAAGTTGGGGAAGAAGAATTATCTGCCATTCAGTCTGCGGTAAGGATATTAATATAAATTCTTTTACAGTTGCTGTGATTTTTGCTGTCTGAACAAAATCATAGCCTCATCATTCAAGTTCCAAACTAGCTTGGATAAAACTGTCCACATTCTATGATATGTGAAAGCTTGTAGGATCTCAACTTTCATGTTTTATTATTATTATTATTATTATTGGGAGTTTAAACCATATTTGAGATATGAGATTTGAACATCTAACCTCTTGATCGAGAGCATATGTTAATTATACTTGCTTTAAGATCTGTAGTGATAAAAATATACTTCGGAGTATATTGTACACGAATTGTATAATCCTTCTAAATTCTGTTGTTGGGTTGTTACTACTTCCCCAAAATTTCATCATCTTCTTGCTTAGTCGATGATATTTCGATGC

mRNA sequence

TCCGTTCCCTATAGAAGTCCACAACCGCGCCTCAGTGACCTTTTTCCCTCTAGCGGGTTCGCCGGCGTCGGCCATCGTTCTCAAGTTGCTGGTTTCACTGCACGTCTTCTCCATTGATCTTTGATCCTTTTTTCTTATTTGTTTGCGGAACGTTCGGGTGCTATCCTTGCATGTGAAGACGCCTAGTTACTTTAGCAGTAGGTTTTGATGGAATCGCTGTTAGGATTTGAAGAAGTACCAGTGGAGACTGAAGAAGATAATTCGTCGACGTACAGCCGAAAATTGGTACCCTGGTCGACTTGGAGCGAGTGGCTTTTTGTTAGTCAATCACTCTTCTCTGACTCTTCTGACTCCGTCGCCGCCGCTCTGGGAAGAATATCAACATGGAGAAGCAGAGGCTGTCTTCCAGTCGTCGTTGAAGTGACAGCATCTATAATCGAAATCCAACAAAAGGATCCCTACTTCACAAAGAACCAATCGGTGGATGCTTCAGTTCGTGGTACAGAGGAACCATTAAATAGTGTTTCACTTTCAGAGGAAGCGTTAGCCATGTTATATTGCATGGCCATTATGAGGCTTGTAAATGGTGTTGTTGAGAAGACACGCAAGAAAACAGAGGTTTCAATTGCTGTGGCAGCTGATGCTATTGGTTTGCCTCGTGTACTGATTGATATTCGTCATGAGGGTTCTCATCGTGAACTTCCAGCTCTTCAGGTGGTTCGGTGTGCCTCAATCAAGGCACTTCATTGGTTGAAATCTTATTATTGGGAACCTCAGGAAAAAGCAATTCCATTTCTAGGTGATATAAGTACTACCATTAGAAAAGAAATCAAATCCAGACTTCGTGATTTGGCTTTCAACTTAAATGAGAAGCAAAATTCTCAACGTGGATCAGTGGTCAAGCCAAAACGTTTGAAGACAAAGACGGGCAAGACACTGAAGTTTCTTATTCAGTTATATTCTACTTTCTCTTCAGAATTTTTATCTATATTGTTGGAATTTTTGCTGAAGGCAATGAGGTCATCAGACTTGGCCTTTCCTGAAAATTCCAAAAAATCCAGAAGCACCGTATTGGAAGGTTGGAAGCTCGCGATCGCTAAGATCTCGAATAAGGAACCAGAATTGCTTTTAGATCTGCTCGAGGCAATTCTGGAGAAAATCAAGACTCAAGAAGCCTTGGAATATGAAGGTCAGTACTTCACGTCCTCAGATCACAAAATGAAGAGCTGTCAAGTCGCACAGCTTTCATCTTTGTTTGCATGGCTTGTTGAAAAACTCAAGGGTATAAACCTAAAGCGCAATGGAGAAGTTTCTTCTGGAAAACACATTCCGAAAGGTGTTCTAATGGAGTTGCTACGTAAATGCCTTCTGGTATCAGCTCCTGGGAACAAGCGACTTATGGATTCTGCCACTGATCTTGCACAGTTATTGGATGACGGTTCTCTAATGAAGAAACTGAACAAACTATCCTTTCTGAATCTATTGAATTCAGATATTCCCGACAAAGAAAATCCCATCCAAACCACTTCAGAAATCAGTTTAAACCACGTGGAGTCGCTCCGTGAAGCAAGTCGGAAACTGGAGATGATTAAGCTCCACAAAAGAAAGAACAACTTGGCAGCAAATCCAGTAGATGGTATTGTTGGAACTTCCACCAGGTGGACTGTGGTAAATTCATGGACCCCATGTCCAATTGGTATGTTGCCTCGTCCAATTGGCTCTTCTGGTCGTCTTCCTGTTCTTGACCTCAATCCCGAGAACGAACCAGCTTCGGAAGATCTGAGAAGCGAAGAGAACTTCGAACTCGGCAAATGTAGCCACAAGAGAGAAGCCAGTTCTGATACTCAGCAACTTGATAGCGGTACTGTCAAGAAAATGAAGGAAACAAATGGAAACTTCCAATCTGAGATAGACGATGTCGATTCACCTGAAGGTGTCAAAGGGCGCTTGTTGATAGGTGGGATATGGAAGAAAGTTGGGGAAGAAGAATTATCTGCCATTCAGTCTGCGGTAAGGATATTAATATAAATTCTTTTACAGTTGCTGTGATTTTTGCTGTCTGAACAAAATCATAGCCTCATCATTCAAGTTCCAAACTAGCTTGGATAAAACTGTCCACATTCTATGATATGTGAAAGCTTGTAGGATCTCAACTTTCATGTTTTATTATTATTATTATTATTATTGGGAGTTTAAACCATATTTGAGATATGAGATTTGAACATCTAACCTCTTGATCGAGAGCATATGTTAATTATACTTGCTTTAAGATCTGTAGTGATAAAAATATACTTCGGAGTATATTGTACACGAATTGTATAATCCTTCTAAATTCTGTTGTTGGGTTGTTACTACTTCCCCAAAATTTCATCATCTTCTTGCTTAGTCGATGATATTTCGATGC

Coding sequence (CDS)

ATGGAATCGCTGTTAGGATTTGAAGAAGTACCAGTGGAGACTGAAGAAGATAATTCGTCGACGTACAGCCGAAAATTGGTACCCTGGTCGACTTGGAGCGAGTGGCTTTTTGTTAGTCAATCACTCTTCTCTGACTCTTCTGACTCCGTCGCCGCCGCTCTGGGAAGAATATCAACATGGAGAAGCAGAGGCTGTCTTCCAGTCGTCGTTGAAGTGACAGCATCTATAATCGAAATCCAACAAAAGGATCCCTACTTCACAAAGAACCAATCGGTGGATGCTTCAGTTCGTGGTACAGAGGAACCATTAAATAGTGTTTCACTTTCAGAGGAAGCGTTAGCCATGTTATATTGCATGGCCATTATGAGGCTTGTAAATGGTGTTGTTGAGAAGACACGCAAGAAAACAGAGGTTTCAATTGCTGTGGCAGCTGATGCTATTGGTTTGCCTCGTGTACTGATTGATATTCGTCATGAGGGTTCTCATCGTGAACTTCCAGCTCTTCAGGTGGTTCGGTGTGCCTCAATCAAGGCACTTCATTGGTTGAAATCTTATTATTGGGAACCTCAGGAAAAAGCAATTCCATTTCTAGGTGATATAAGTACTACCATTAGAAAAGAAATCAAATCCAGACTTCGTGATTTGGCTTTCAACTTAAATGAGAAGCAAAATTCTCAACGTGGATCAGTGGTCAAGCCAAAACGTTTGAAGACAAAGACGGGCAAGACACTGAAGTTTCTTATTCAGTTATATTCTACTTTCTCTTCAGAATTTTTATCTATATTGTTGGAATTTTTGCTGAAGGCAATGAGGTCATCAGACTTGGCCTTTCCTGAAAATTCCAAAAAATCCAGAAGCACCGTATTGGAAGGTTGGAAGCTCGCGATCGCTAAGATCTCGAATAAGGAACCAGAATTGCTTTTAGATCTGCTCGAGGCAATTCTGGAGAAAATCAAGACTCAAGAAGCCTTGGAATATGAAGGTCAGTACTTCACGTCCTCAGATCACAAAATGAAGAGCTGTCAAGTCGCACAGCTTTCATCTTTGTTTGCATGGCTTGTTGAAAAACTCAAGGGTATAAACCTAAAGCGCAATGGAGAAGTTTCTTCTGGAAAACACATTCCGAAAGGTGTTCTAATGGAGTTGCTACGTAAATGCCTTCTGGTATCAGCTCCTGGGAACAAGCGACTTATGGATTCTGCCACTGATCTTGCACAGTTATTGGATGACGGTTCTCTAATGAAGAAACTGAACAAACTATCCTTTCTGAATCTATTGAATTCAGATATTCCCGACAAAGAAAATCCCATCCAAACCACTTCAGAAATCAGTTTAAACCACGTGGAGTCGCTCCGTGAAGCAAGTCGGAAACTGGAGATGATTAAGCTCCACAAAAGAAAGAACAACTTGGCAGCAAATCCAGTAGATGGTATTGTTGGAACTTCCACCAGGTGGACTGTGGTAAATTCATGGACCCCATGTCCAATTGGTATGTTGCCTCGTCCAATTGGCTCTTCTGGTCGTCTTCCTGTTCTTGACCTCAATCCCGAGAACGAACCAGCTTCGGAAGATCTGAGAAGCGAAGAGAACTTCGAACTCGGCAAATGTAGCCACAAGAGAGAAGCCAGTTCTGATACTCAGCAACTTGATAGCGGTACTGTCAAGAAAATGAAGGAAACAAATGGAAACTTCCAATCTGAGATAGACGATGTCGATTCACCTGAAGGTGTCAAAGGGCGCTTGTTGATAGGTGGGATATGGAAGAAAGTTGGGGAAGAAGAATTATCTGCCATTCAGTCTGCGGTAAGGATATTAATATAA

Protein sequence

MESLLGFEEVPVETEEDNSSTYSRKLVPWSTWSEWLFVSQSLFSDSSDSVAAALGRISTWRSRGCLPVVVEVTASIIEIQQKDPYFTKNQSVDASVRGTEEPLNSVSLSEEALAMLYCMAIMRLVNGVVEKTRKKTEVSIAVAADAIGLPRVLIDIRHEGSHRELPALQVVRCASIKALHWLKSYYWEPQEKAIPFLGDISTTIRKEIKSRLRDLAFNLNEKQNSQRGSVVKPKRLKTKTGKTLKFLIQLYSTFSSEFLSILLEFLLKAMRSSDLAFPENSKKSRSTVLEGWKLAIAKISNKEPELLLDLLEAILEKIKTQEALEYEGQYFTSSDHKMKSCQVAQLSSLFAWLVEKLKGINLKRNGEVSSGKHIPKGVLMELLRKCLLVSAPGNKRLMDSATDLAQLLDDGSLMKKLNKLSFLNLLNSDIPDKENPIQTTSEISLNHVESLREASRKLEMIKLHKRKNNLAANPVDGIVGTSTRWTVVNSWTPCPIGMLPRPIGSSGRLPVLDLNPENEPASEDLRSEENFELGKCSHKREASSDTQQLDSGTVKKMKETNGNFQSEIDDVDSPEGVKGRLLIGGIWKKVGEEELSAIQSAVRILI

Homology

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BLAST of CmaCh02G012850 vs. ExPASy Swiss-Prot
Match: Q9Y4W2 (Ribosomal biogenesis protein LAS1L OS=Homo sapiens OX=9606 GN=LAS1L PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-12
Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 0


Query: 26  LVPWSTWSEWLFVSQSLFSDSSDSVAAALGRISTWRSRGC--LPVVVEVTASIIEIQQKD 85
           +V W + +EW  V+  LF D       AL RI+ WRSR    LP+ V  TA +I  +  D
Sbjct: 42  VVAWLSRAEWDQVTVYLFCDDHKLQRYALNRITVWRSRSGNELPLAVASTADLIRCKLLD 101

Query: 86  PYFTKNQSVDASVRGTEEPLNSVSLSEEALAMLYCMAIMRLVNGVVEKTRKKTEVSIAVA 145
                       V G         L  + L +LY MA++R VN + E+  K  +V +   
Sbjct: 102 ------------VTG--------GLGTDELRLLYGMALVRFVNLISERKTKFAKVPLKCL 161

Query: 146 ADAIGLPRVLIDIRHEGSHRELPALQVVRCASIKALHWLKSYYW 188
           A  + +P  ++D+RHE +H+++P +   R      L WL+  YW
Sbjct: 162 AQEVNIPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYW 185

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BLAST of CmaCh02G012850 vs. ExPASy Swiss-Prot
Match: A2BE28 (Ribosomal biogenesis protein LAS1L OS=Mus musculus OX=10090 GN=Las1l PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-12
Identity = 49/167 (29.34%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 26  LVPWSTWSEWLFVSQSLFSDSSDSVAAALGRISTWRSR--GCLPVVVEVTASIIEIQQKD 85
           +V W + +EW  V+  LF D       AL RI+ WRSR    LP+ V  TA ++  +  D
Sbjct: 27  VVSWLSRAEWEQVTVYLFCDDHKLQQYALNRITVWRSRLGNELPLAVASTADLVRCKLID 86

Query: 86  PYFTKNQSVDASVRGTEEPLNSVSLSEEALAMLYCMAIMRLVNGVVEKTRKKTEVSIAVA 145
                     A   GT+E           L +LY MA++R VN + E+  K + + +   
Sbjct: 87  A---------AGTLGTDE-----------LRLLYGMALVRFVNLISERKTKCSNLPLKYL 146

Query: 146 ADAIGLPRVLIDIRHEGSHRELPALQVVRCASIKALHWLKSYYWEPQ 191
           A  + +P  ++++RH  +H+++P +   R      L+WL+  YW  Q
Sbjct: 147 AQEVNIPDWIVELRHNLTHKKMPHINECRRGCYFVLNWLQKTYWSRQ 173

[Close]

BLAST of CmaCh02G012850 vs. ExPASy Swiss-Prot
Match: O42936 (Pre-rRNA-processing protein las1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=las1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-11
Identity = 46/176 (26.14%), Postives = 88/176 (50.00%), Query Frame = 0


Query: 25  KLVPWSTWSEWLFVSQSLFSDSSDSV--AAALGR----ISTWRSRGCLPVVVEVTASIIE 84
           K+VPW    ++L++    +++  + +   AAL R    I  W +RG +P  VE T+ ++ 
Sbjct: 4   KVVPWRLKEDFLYLMSCFYNEGQEGIPDLAALFRGVEIIQAWSTRGRIPHSVESTSQLV- 63

Query: 85  IQQKDPYFTKNQSVDASVRGTEEPLNSVSLSEEALAMLYCMAIMRLVNGVVEKTRK-KTE 144
                                    +S+  ++ +  +   ++I R V+G+++  ++ +  
Sbjct: 64  -------------------------SSLISNDRSQKLALAVSISRFVSGLLDPIQQSQYA 123

Query: 145 VSIAVAADAIGLPRVLIDIRHEGSHRELPALQVVRCASIKALHWLKSYYWEPQEKA 194
           + +AV A +I LP   +++RH  +H ELP+L V+R A+ +AL WL  +YW P   A
Sbjct: 124 IPMAVLAKSIDLPTYFVELRHAITHEELPSLPVLRQAAQRALSWLYDHYWNPAATA 153

[Close]

BLAST of CmaCh02G012850 vs. ExPASy Swiss-Prot
Match: P36146 (Protein LAS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LAS1 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-11
Identity = 51/177 (28.81%), Postives = 87/177 (49.15%), Query Frame = 0


Query: 25  KLVPWSTWSE------WLFVSQSLFSDSSDSVAAALGRISTWRSRGC--LPVVVEVTASI 84
           ++VPW  ++E      W +          D    A+ R+ ++R +G   LP VV+ TA I
Sbjct: 5   RIVPWRDFAELEELKLWFYPKSK--GTIEDKRQRAVQRVQSYRLKGSQYLPHVVDSTAQI 64

Query: 85  IEIQQKDPYFTKNQSVDASVRGTEEPLNSVSLSEEALAMLYCMAIMRLVNGVVEKTRK-K 144
                            A +   +E    V      + + Y MA++R VNG+++ T++ +
Sbjct: 65  ---------------TCAVLLDEKEACLGVHQDSIPIRLSYVMALIRFVNGLLDPTQQSQ 124

Query: 145 TEVSIAVAADAIGLPRVLIDIRHEGSH-RELPALQVVRCASIKALHWLKSYYWEPQE 192
             + +   A  IGLP   +D+RH G+H R+LP L+++R A+ +AL WL  +YW  +E
Sbjct: 125 FAIPLHTLAAKIGLPSWFVDLRHWGTHERDLPGLEMLRWAANEALSWLYDHYWNDEE 164

[Close]

BLAST of CmaCh02G012850 vs. TAIR 10
Match: AT5G12220.1 (las1-like family protein )

HSP 1 Score: 374.0 bits (959), Expect = 2.3e-103
Identity = 254/637 (39.87%), Postives = 361/637 (56.67%), Query Frame = 0


Query: 1   MESLLG----FEEVPVETEEDNSSTYSRKLVPWSTWSEWLFVSQSLFSDSSDSVAAALGR 60
           ME+L G     E    E ++  SS    K VPW +W EW  V +SLFS S D +A+AL R
Sbjct: 1   MEALAGIEADIESYFGEQDQQKSSPDGCKQVPWLSWEEWDSVRESLFSSSPDRIASALER 60

Query: 61  ISTWRSRGCLPVVVEVTASIIEIQQKDPYFTK-NQSVDASVRGTEEPLNSVSLSEEALAM 120
           ++TWRSRG LP  V+VT S+IEIQ KD +  +  QS DA              SE  L M
Sbjct: 61  VATWRSRGSLPAPVDVTCSLIEIQLKDGFIPREKQSADA------------LYSEHLLQM 120

Query: 121 LYCMAIMRLVNGVVEKTRKKTEVSIAVAADAIGLPRVLIDIRHEGSHRELPALQVVRCAS 180
           LYCM I+RLVN V+EKTR++ +VSIA AA AIG+PR LID+RHEGSHRELPAL V+R A+
Sbjct: 121 LYCMGILRLVNCVIEKTRRREDVSIADAARAIGIPRKLIDLRHEGSHRELPALSVLRDAA 180

Query: 181 IKALHWLKSYYWEPQEKAIPFLGDISTTIRKEIKSRLRDLAFNLNEKQNSQRGS-VVKPK 240
            +AL WLKSYYWE Q+  IP   D + +IR+E+KS+LR LAF+L  K+N Q  S +VK K
Sbjct: 181 DEALEWLKSYYWEQQKYQIPLKRDGTASIRREVKSKLRKLAFSLQLKRNPQFDSPLVKEK 240

Query: 241 RLKTKTGKTLKFLIQLYSTFSSEFLSILLEFLLKAMRSSDLAFPENSKKSRSTV-LEGWK 300
               +  K +  L++LY +FS+E  S+LLEFLLKA+ SS     +N       V L+ WK
Sbjct: 241 CSNKRIRKIVSSLVELYPSFSAEISSVLLEFLLKALDSSKSTDLQNKAGQDFRVFLDEWK 300

Query: 301 LAIAKISNKEPELLLDLLEAILEKIKTQEALEYEGQYFTSSDHKMKSCQVAQLSSLFAWL 360
             I ++SN+EPELLL LL+ +L+ I+  E   +E     +     +  QV Q+  LFAWL
Sbjct: 301 PVIMELSNREPELLLTLLKEVLDMIQNNERRRHE-----TEKPVEEVSQVEQVPFLFAWL 360

Query: 361 VEKLKGI-NLKRNGEVSSGKHIPKGVLMELLRKCLLVSAPGNKRLMDSATDLAQLLDDGS 420
           V  L G  + +RN  +      P   LMEL+R+CL++ A G + ++ SA  LA+++    
Sbjct: 361 VSLLNGSKHFQRNSSLEVKP--PSIFLMELIRRCLVLGALGYELVLKSAFLLAEIVGGRV 420

Query: 421 LMKKLNKLSFLNLLNSDIPDKE-NPIQTTSEISLNHVESLREASRKLEMIKLH-KRKNNL 480
           L +KL KL  ++  ++ +P K+ + + T S   L   ++L  A ++LE +KL   +K  +
Sbjct: 421 LKEKLIKLPLMHKSSAIVPLKQSSTLVTASTTLLEQEKNLGNAGKRLEFVKLQLSKKKGI 480

Query: 481 AANPVDGIVGTSTRWTVVNSWTPCPIGMLPRPIGSSGRLPVLDLNPENEPASEDLRSEEN 540
             +       T  RW    +W+PCPIGMLPR IGSSGRLP+LD N   +  S+  +   N
Sbjct: 481 DTDK------TGNRWRKAKTWSPCPIGMLPRIIGSSGRLPLLD-NQNAKSISKQAQGNNN 540

Query: 541 -----------FELGKCSHKREASSDTQQLDSGTVKKMKETNGNFQSEIDDVDS------ 600
                       E   C   R+++ D++  D       +E     +   ++ ++      
Sbjct: 541 AKRGAECNRNQLEKSPCKRARKSAGDSESNDVTLESYEEEAEMEIEHAYEETETVAEENL 600

Query: 601 ----PEGVKGRLLIGGIWKKVGEEELSAIQSAVRILI 607
                E  +  L+I G WK+V + ELS + S+V I +
Sbjct: 601 MWNDEEESRSCLMIDGEWKRVNDGELSGMASSVTICV 611

[Close]

BLAST of CmaCh02G012850 vs. TAIR 10
Match: AT5G12220.2 (las1-like family protein )

HSP 1 Score: 347.4 bits (890), Expect = 2.3e-95
Identity = 246/637 (38.62%), Postives = 351/637 (55.10%), Query Frame = 0


Query: 1   MESLLG----FEEVPVETEEDNSSTYSRKLVPWSTWSEWLFVSQSLFSDSSDSVAAALGR 60
           ME+L G     E    E ++  SS    K VPW +W EW  V +SLFS S D +A+AL R
Sbjct: 1   MEALAGIEADIESYFGEQDQQKSSPDGCKQVPWLSWEEWDSVRESLFSSSPDRIASALER 60

Query: 61  ISTWRSRGCLPVVVEVTASIIEIQQKDPYFTK-NQSVDASVRGTEEPLNSVSLSEEALAM 120
           ++TWRSRG LP  V+VT S+IEIQ KD +  +  QS DA              SE  L M
Sbjct: 61  VATWRSRGSLPAPVDVTCSLIEIQLKDGFIPREKQSADA------------LYSEHLLQM 120

Query: 121 LYCMAIMRLVNGVVEKTRKKTEVSIAVAADAIGLPRVLIDIRHEGSHRELPALQVVRCAS 180
           LYCM I+RLVN V+EKTR++ +VSIA AA AI           EGSHRELPAL V+R A+
Sbjct: 121 LYCMGILRLVNCVIEKTRRREDVSIADAARAI-----------EGSHRELPALSVLRDAA 180

Query: 181 IKALHWLKSYYWEPQEKAIPFLGDISTTIRKEIKSRLRDLAFNLNEKQNSQRGS-VVKPK 240
            +AL WLKSYYWE Q+  IP   D + +IR+E+KS+LR LAF+L  K+N Q  S +VK K
Sbjct: 181 DEALEWLKSYYWEQQKYQIPLKRDGTASIRREVKSKLRKLAFSLQLKRNPQFDSPLVKEK 240

Query: 241 RLKTKTGKTLKFLIQLYSTFSSEFLSILLEFLLKAMRSSDLAFPENSKKSRSTV-LEGWK 300
               +  K +  L++LY +FS+E  S+LLEFLLKA+ SS     +N       V L+ WK
Sbjct: 241 CSNKRIRKIVSSLVELYPSFSAEISSVLLEFLLKALDSSKSTDLQNKAGQDFRVFLDEWK 300

Query: 301 LAIAKISNKEPELLLDLLEAILEKIKTQEALEYEGQYFTSSDHKMKSCQVAQLSSLFAWL 360
             I ++SN+EPELLL LL+ +L+ I+  E   +E     +     +  QV Q+  LFAWL
Sbjct: 301 PVIMELSNREPELLLTLLKEVLDMIQNNERRRHE-----TEKPVEEVSQVEQVPFLFAWL 360

Query: 361 VEKLKGI-NLKRNGEVSSGKHIPKGVLMELLRKCLLVSAPGNKRLMDSATDLAQLLDDGS 420
           V  L G  + +RN  +      P   LMEL+R+CL++ A G + ++ SA  LA+++    
Sbjct: 361 VSLLNGSKHFQRNSSLEVKP--PSIFLMELIRRCLVLGALGYELVLKSAFLLAEIVGGRV 420

Query: 421 LMKKLNKLSFLNLLNSDIPDKE-NPIQTTSEISLNHVESLREASRKLEMIKLH-KRKNNL 480
           L +KL KL  ++  ++ +P K+ + + T S   L   ++L  A ++LE +KL   +K  +
Sbjct: 421 LKEKLIKLPLMHKSSAIVPLKQSSTLVTASTTLLEQEKNLGNAGKRLEFVKLQLSKKKGI 480

Query: 481 AANPVDGIVGTSTRWTVVNSWTPCPIGMLPRPIGSSGRLPVLDLNPENEPASEDLRSEEN 540
             +       T  RW    +W+PCPIGMLPR IGSSGRLP+LD N   +  S+  +   N
Sbjct: 481 DTDK------TGNRWRKAKTWSPCPIGMLPRIIGSSGRLPLLD-NQNAKSISKQAQGNNN 540

Query: 541 -----------FELGKCSHKREASSDTQQLDSGTVKKMKETNGNFQSEIDDVDS------ 600
                       E   C   R+++ D++  D       +E     +   ++ ++      
Sbjct: 541 AKRGAECNRNQLEKSPCKRARKSAGDSESNDVTLESYEEEAEMEIEHAYEETETVAEENL 600

Query: 601 ----PEGVKGRLLIGGIWKKVGEEELSAIQSAVRILI 607
                E  +  L+I G WK+V + ELS + S+V I +
Sbjct: 601 MWNDEEESRSCLMIDGEWKRVNDGELSGMASSVTICV 600

The following BLAST results are available for this feature:

BLAST of CmaCh02G012850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y4W2	1.8e-12	31.10	Ribosomal biogenesis protein LAS1L OS=Homo sapiens OX=9606 GN=LAS1L PE=1 SV=2	[more]
A2BE28	2.3e-12	29.34	Ribosomal biogenesis protein LAS1L OS=Mus musculus OX=10090 GN=Las1l PE=1 SV=1	[more]
O42936	2.0e-11	26.14	Pre-rRNA-processing protein las1 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
P36146	4.4e-11	28.81	Protein LAS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of CmaCh02G012850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12220.1	2.3e-103	39.87	las1-like family protein	[more]
AT5G12220.2	2.3e-95	38.62	las1-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007174	Las1	PFAM	PF04031	Las1	coord: 27..188 e-value: 6.4E-41 score: 139.9
IPR007174	Las1	PANTHER	PTHR15002	UNCHARACTERIZED	coord: 18..604
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 546..568
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 536..571

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012850.1	CmaCh02G012850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0090730	Las1 complex
molecular_function	GO:0004519	endonuclease activity