CmaCh02G012520 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	heterogeneous nuclear ribonucleoprotein F-like
Location	Cma_Chr02: 7354426 .. 7359074 (+)
RNA-Seq Expression	CmaCh02G012520
Synteny	CmaCh02G012520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATAATGAAAATGTTACATTTTTATAATTAAATTTTTAATTTTTTTTTATAACTATTTAATTTTTGGAAACTGTGTTTATCTTTCTACTCGAACAAATTTGATGGGCCTGTCGGGAATGAAAAAGGAAGGGTACGGGTCCATTCAGGCGCAGTGAGGTCTCAGCTTCTCACGCTTATTTAATATTTACTTCGCAATTTGGATTCAGATTTCACAATTCAACTGATGCTGCGACGCCTGCCGCTTCGACATCAACAACTGGGCATCCCCCCCTATCAGCGCGACCATGTTCTATCGAGGGTAAGTTTTCTCTTCCCCTGATCCCTATTCTCAACTTCATTCTATTTCTACGATTCTTTTCCCCACAATTCTTGTATTTTGACGCCGATTTGGGGTTCCAATCGCTTCGTTTCTCTCTACTTCCTGTGTATTTCTAAATTGATGAGGATTCCAAGCTTCTTTTCACTAATTATTCTTACGTACCGTGTGTTTTCTTCTTCATTCACTCTGAGTGTTTCGTTCTTTCTTTTATTGGATTAGAATTGTTTAGAGGCTTATTTTGTTAATTTCGAATCTCCGATTACGGGTATGATCGGGTATGCGTGGATTTTGTTCTTTAAGGTTCTTATCGCTTTGTAAATGCTTTGCACGACCGGATGCGTAGAAGCAATTTCATATGATGTATGGATGAACTAGCAAAGCAAAATAAAACCGAAGTTTTAACTTGAAAATTTTGGATATTTTCAGTTTGTTGTTTCAGTGACTCTAAGTGGTTGGATGATTAATTGGCTAGTTTATATGGTCTCGAAGACTGGGTTGTTGAATTGTCATCAATTAGTTTAGGTATTGGGAACGCCTGAACTTTAATTTTTATTGTCTTAACAATATATGAGATTTGTTTTAGAATGGGAAATATACGCTTGGTTTTTTTTACCTGTTGGAGAGAGATTAGATAATGAGGAAAGGGCATGATAGCAGGAGGAAATATACCCTACCTTGGTCTCCCCCATTGGGGTTCACATAAGATCCCTCAATTTTCGGGAATGGATGGACATAGCAAGAGGCATAACATATTACTTGTATCTCTTCAAATTCCTTTTTCTATGGCCAGGGCTCTGGAGTAATATTTTACTGATTTCTCCTGGCATGATGATTCCTGGTCAACAGGCTTCCACCTTGTGTCAATTTGTATCATTCCGGAGCTTCCTGTTATTTTTAAAGAGATTCGGGCATTGGCTATGTAATCTATTGTAATTTGGCCCTCGTTTTAACGTGGCATTAAGTCGAATGAACCAAATTCTCTCTTATCACAAGGTCATTTCTAGTAAATATGATGCTCAAACGAATGGATGCTCTCCCCTTCATAAAACTTCCAGCACCCAAATGTTCAACCCTCCGGTGAATTTCAAGAGAGAATTTGGTCTTGGGAGAATTGCTGACCCCAAACCCTCACACTGGCACCTTACTGTGAGAAACTAATGTAGATAGAGAGCTAGCTGTCAGGATTAAAGATACAATGACCTGGAAACCTGGGTTTTTGAAAACATCTCAAGGATGAGGAAGTCCTAAACTTTTTAGAACTTTTCTAGGAATTTAGCTTATTTAGGCCATTCCGCATGGAAGCCAGGAGAAATTTGGAGCTTGGACATATGTGGAAACATGTCCTGCAAGTTTCTTTTCACCACCTTGTTATCTCATGTCCAGCCATTCAAAAAACTACGGTAAATTGCATTTGTAGGAGAAAGATTACCAAAAAGATTTAACCCTTCTTATGGTTACATATTGGAGAGTATTGAACACCTTTGAAAAGTTGCAAGCAAGATCGCATTCCTCTTTTTTCTTTAATCTTCAAACTGATGGATAATATGAAAAGCCATCTTTCCTTTGCTCGATTTTGTGGCTAACCACTGGAGCAACACTCTTGATTAAAACTTTTTTGGTAATCCTGAACTATGAAAGAGGATCAAATAGTCTTTTCGTCAATTCTAGCTGTTTGTGTTGATTGTCAACTTTAATGTAGTCCTTTACTGAAGCGTCTGCCATTTTCTGTATTTATCTTCTGTGTTTTCGGAAAATACTGAAAGTTTACCCACGTTTGTTTTACGAGAAACTTGGACTCGCAGATCTATATTCTTATAGCCCAGGAAATTATCTGCTAGTTAATAGATGCGTGTAGGAGTATCTCTTCGTTATCTGCATACCAATGAGTGGGAGAAGTGTGGATATTTTTCTTATATTTGATACATCGATTTTTTTTTCTCTCTCGAGATGGAATATTGATGAGGTTTCTGTTTTTGTTCGAATTGAAGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATACAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAGTGACAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGAAATAGGCAAAACCTGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCAAATGAAGTTTTTGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGGTCGAAATTAAACGATGAGGTGAAGGACTTCGCCGAACACACAGGTATATTACGTTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACGTGATTCATCTAACACTGAATTCAGAAGGAAGGCCAAGTGGGGAAGCATTTGTTGAATTCGCAAACGAGCAAGACTCGAAAGCAGCGATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCATCATCCCAAGAAGAGCTCGACGAAGCTATCGGCAGAGGACGGTGACACCAGCTATTCTATTCTATTCTATTCACTGTGTTTTCTTCAATTACTATGTTGTTTTGAATTGGTTTTGGAGCAATGAGGTTTATGGAGGAGTTAGAAGTGAATAGGAGCCAAGTTTGGTTGTGTTCTTATGGTGACCATACATTCTCTCTACATTCCAGGACCATTGTTAGCCAGACAGAGCAGGTTGCACTAATCGCTCAAATTTGTGAAAAGAATTTGGTCAGAAGGGTTCTCTTTATGTATTATTAACCATTTCTCTGGGTAGACGCTGTAGTTGGTGGTTTATAATCTCTATCATATTTTTGTGTTTAAATTAAAGTTGAAGGGTAGAATGAGAAAGATGGGCCACTCTATATCTGTTGCTAAAATTTCATTTGTTTTTTCAAAACTGGAACCTAGACAGATTTTCCTCGGCTAAAGTTTAAATTGAAAAGATGGATTAATAATATGTATTTAATTAATTAATGTTGTATTAAAAGAATTAACACCCTCGAGAAATATTTTATTTAAGAATAATTAAGGAATTTATAATTCCACCACATTGATATTATAATAATAAAATTCACAATTATCCTTACATCACCAACACACATTCTTTTAACTATTTGCTTCTTAAAGAGAAGCTATAGAGGACAACATTTTTATTTTCCATTGGATTTTTATTTATATAGCAATAAAAAAAATAAAGTATTTATCTAAAAATTGATTCCCAGCGGGCAGCGGGCGGCCCATGCCCTAATTTGAACTAATCAAGTTAGGAGTAATCCCAAGAAGGGTGCCTAAAAATTTGAACTCTATCTCCCTCCTTTCTCTCTCTCACTGATTATTTGCCTCGGGTAGCGGGCAGCCTACCCTGATTCTCTCTGCTTATAATGAGCTCGAGACGGACACAAGCACACTTGTGAATGCGAACCCCCCTTTCCCTGTCTCTCTCCTCTTTCTCTCTCTAGGGCTTTGTGGGTTTTTGAACTTCAATCCTTCTCTTCAATGGGTGTCTTCAAAATTCTCTGAAATCCCTTCTGAAAGCTTTAGTCTTTGCAGAACCCCATTTTACAGAACCCTGTTCCTTTACCAATAACACCTTCTATTTTGTTCCCCTAACGTTGTTTTTGTTGCTTGCTGCCTGTTGGTTGGTCTTGTTTTTTGTTTTGTTCCGCTTTGTCAAATTCCTCTGCTACTCAAATCGACCAGTCACCAAATTCCTTCAAAATGGCTCCTTCAGGAGGTAAAATGGCGACAAGACCCAGAAGAAATATACCCAACTCCAAGCTGAATAAGAAAATGAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCGCCGCCACAGAACGACGTCGTTCAATTTCCTGACGACGACTTCGACAACGACGACGTCGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCGTCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCTCTCGACCGGACATTTCAGTTTGA

mRNA sequence

CTATAATGAAAATGTTACATTTTTATAATTAAATTTTTAATTTTTTTTTATAACTATTTAATTTTTGGAAACTGTGTTTATCTTTCTACTCGAACAAATTTGATGGGCCTGTCGGGAATGAAAAAGGAAGGGTACGGGTCCATTCAGGCGCAGTGAGGTCTCAGCTTCTCACGCTTATTTAATATTTACTTCGCAATTTGGATTCAGATTTCACAATTCAACTGATGCTGCGACGCCTGCCGCTTCGACATCAACAACTGGGCATCCCCCCCTATCAGCGCGACCATGTTCTATCGAGGAATTGTTTAGAGGCTTATTTTGTTAATTTCGAATCTCCGATTACGGGTATGATCGGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATACAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAGTGACAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGAAATAGGCAAAACCTGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCAAATGAAGTTTTTGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGGTCGAAATTAAACGATGAGGTGAAGGACTTCGCCGAACACACAGAAGACGTGATTCATCTAACACTGAATTCAGAAGGAAGGCCAAGTGGGGAAGCATTTGTTGAATTCGCAAACGAGCAAGACTCGAAAGCAGCGATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCATCATCCCAAGAAGAGCTCGACGAAGCTATCGGCAGAGGACGGACCATTGTTAGCCAGACAGAGCAGGTTGCACTAATCGCTCAAATTTGTGAAAAGAATTTGTCACCAAATTCCTTCAAAATGGCTCCTTCAGGAGGTAAAATGGCGACAAGACCCAGAAGAAATATACCCAACTCCAAGCTGAATAAGAAAATGAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCGCCGCCACAGAACGACGTCGTTCAATTTCCTGACGACGACTTCGACAACGACGACGTCGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCGTCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCTCTCGACCGGACATTTCAGTTTGA

Coding sequence (CDS)

ATGCTGCGACGCCTGCCGCTTCGACATCAACAACTGGGCATCCCCCCCTATCAGCGCGACCATGTTCTATCGAGGAATTGTTTAGAGGCTTATTTTGTTAATTTCGAATCTCCGATTACGGGTATGATCGGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATACAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTCGTCCACAAGAGTGACAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGAAATAGGCAAAACCTGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCAAATGAAGTTTTTGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGGTCGAAATTAAACGATGAGGTGAAGGACTTCGCCGAACACACAGAAGACGTGATTCATCTAACACTGAATTCAGAAGGAAGGCCAAGTGGGGAAGCATTTGTTGAATTCGCAAACGAGCAAGACTCGAAAGCAGCGATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCATCATCCCAAGAAGAGCTCGACGAAGCTATCGGCAGAGGACGGACCATTGTTAGCCAGACAGAGCAGGTTGCACTAATCGCTCAAATTTGTGAAAAGAATTTGTCACCAAATTCCTTCAAAATGGCTCCTTCAGGAGGTAAAATGGCGACAAGACCCAGAAGAAATATACCCAACTCCAAGCTGAATAAGAAAATGAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCGCCGCCACAGAACGACGTCGTTCAATTTCCTGACGACGACTTCGACAACGACGACGTCGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCGTCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCTCTCGACCGGACATTTCAGTTTGA

Protein sequence

MLRRLPLRHQQLGIPPYQRDHVLSRNCLEAYFVNFESPITGMIGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRLRGLPFDCMETDVAEFFHGLDIVDILFVHKSDKFTGEGFCVLGYPLQVDFALQRNRQNLGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIGRGRTIVSQTEQVALIAQICEKNLSPNSFKMAPSGGKMATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPPQNDVVQFPDDDFDNDDVGGGYSTPKAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFFISRPDISV

Homology

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BLAST of CmaCh02G012520 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-19
Identity = 65/180 (36.11%), Postives = 101/180 (56.11%), Query Frame = 0


Query: 96  VVRLRGLPFDCMETDVAEFFHGLDIVD----ILFVH-KSDKFTGEGFCVLGYPLQVDFAL 155
           VV+LRGLP+ C   DV  F     I D    + F++ +  + +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 156 QRNRQNLGRRYVEIFRSNRQE----YYKAVANEVFDARGGSPR-RTAPRSKLNDEVKDFA 215
           +++R+++G RY+E+F+S+R E       +  N    A  G  R R  P     +E+  F 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFF 131

Query: 216 EHTEDV---IHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEEL 263
              E V   I L ++ EG+ +GEAFV+FA+++ ++ A+ K +  +G RYIE+F SSQEE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191

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BLAST of CmaCh02G012520 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-19
Identity = 65/180 (36.11%), Postives = 101/180 (56.11%), Query Frame = 0


Query: 96  VVRLRGLPFDCMETDVAEFFHGLDIVD----ILFVH-KSDKFTGEGFCVLGYPLQVDFAL 155
           VV+LRGLP+ C   DV  F     I D    + F++ +  + +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 156 QRNRQNLGRRYVEIFRSNRQE----YYKAVANEVFDARGGSPR-RTAPRSKLNDEVKDFA 215
           +++R+++G RY+E+F+S+R E       +  N    A  G  R R  P     +E+  F 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFF 131

Query: 216 EHTEDV---IHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEEL 263
              E V   I L ++ EG+ +GEAFV+FA+++ ++ A+ K +  +G RYIE+F SSQEE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191

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BLAST of CmaCh02G012520 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-18
Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 96  VVRLRGLPFDCMETDVAEFFHGLDIVD----ILFVH-KSDKFTGEGFCVLGYPLQVDFAL 155
           VV+LRGLP+ C   DV  F     I D    + F++ +  + +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 156 QRNRQNLGRRYVEIFRSNRQE----YYKAVANEVFDARGGSPR-RTAPRSKLNDEVKDFA 215
           +++R+++G RY+E+F+S+R E       +  N    A  G  R R  P     +E+  F 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFF 131

Query: 216 EHTEDV---IHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEEL 263
              E V   I L ++ EG+ +GEAFV+FA+++ ++ A+ K +  +G RYIE+F SSQEE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191

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BLAST of CmaCh02G012520 vs. ExPASy Swiss-Prot
Match: Q794E4 (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-18
Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 96  VVRLRGLPFDCMETDVAEFFHGLDIVD----ILFVH-KSDKFTGEGFCVLGYPLQVDFAL 155
           VV+LRGLP+ C   DV  F     I D    + F++ +  + +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 156 QRNRQNLGRRYVEIFRSNRQE----YYKAVANEVFDARGGSPR-RTAPRSKLNDEVKDFA 215
           +++R+++G RY+E+F+S+R E       +  N    A  G  R R  P     +E+  F 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFF 131

Query: 216 EHTEDV---IHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEEL 263
              E V   I L ++ EG+ +GEAFV+FA+++ ++ A+ K +  +G RYIE+F SSQEE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191

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BLAST of CmaCh02G012520 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-18
Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 96  VVRLRGLPFDCMETDVAEFFHGLDIVD----ILFVH-KSDKFTGEGFCVLGYPLQVDFAL 155
           VV+LRGLP+ C   DV  F     I D    + F++ +  + +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 156 QRNRQNLGRRYVEIFRSNRQE----YYKAVANEVFDARGGSPR-RTAPRSKLNDEVKDFA 215
           +++R+++G RY+E+F+S+R E       +  N    A  G  R R  P     +E+  F 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFF 131

Query: 216 EHTEDV---IHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEEL 263
              E V   I L ++ EG+ +GEAFV+FA+++ ++ A+ K +  +G RYIE+F SSQEE+
Sbjct: 132 SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191

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BLAST of CmaCh02G012520 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 298.1 bits (762), Expect = 1.1e-80
Identity = 158/289 (54.67%), Postives = 188/289 (65.05%), Query Frame = 0


Query: 46  YADGGDGREMGAKRQRIVDQG--SSYYGTSPGAGFMYNTSPYAYVG--QPPPFPVVRLRG 105
           Y DG DGREMG KRQR++DQG    +YG  P +GFMYN  PY +V    PPPFP VRLRG
Sbjct: 6   YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFPAVRLRG 65

Query: 106 LPFDCMETDVAEFFHGLDIVDILFVHKSDKFTGEGFCVLGYPLQVDFALQRNRQNLGRRY 165
           LPFDC E DV EFFHGLD+VD+LFVH+++K TGE FCVLGYPLQVDFALQ+NRQN+GRRY
Sbjct: 66  LPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRY 125

Query: 166 VEIFRSNRQEYYKAVANEVFDAR---------------------------------GGSP 225
           VE+FRS +QEYYKA+ANEV ++R                                 G SP
Sbjct: 126 VEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSP 185

Query: 226 RRTAPRSKLNDEVKDFAEHT---------------------------EDVIHLTLNSEGR 271
           RR   R++ +D+ K+  EHT                           ED +H+T+N EGR
Sbjct: 186 RRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGR 245

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BLAST of CmaCh02G012520 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-44
Identity = 103/253 (40.71%), Postives = 148/253 (58.50%), Query Frame = 0


Query: 49  GGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRLRGLPFDCME 108
           G  G E+G+KRQR++ Q + Y     G     +  P+ Y G    FPVVRLRGLPF+C +
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGP---TSFPPFGYAG---GFPVVRLRGLPFNCAD 69

Query: 109 TDVAEFFHGLDIVDILFVHKSDKFTGEGFCVLGYPLQVDFALQRNRQNLGRRYVEIFRSN 168
            D+ EFF GL+IVD+L V K+ KF+GE F V   P+QV+ ALQR+R N+GRRYVE+FR +
Sbjct: 70  IDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCS 129

Query: 169 RQEYYKAVANE----VFDARGGSPRRTAPRSKLNDEVKDFAEHTEDV------------- 228
           +Q+YY AVA E     ++ R   P     R+K   E K+  E+TE +             
Sbjct: 130 KQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNKPQ 189

Query: 229 --------------IHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPS 271
                         + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELFP+
Sbjct: 190 IIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPT 249

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BLAST of CmaCh02G012520 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-20
Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = 0


Query: 144 LQVDFALQRNRQNLGRRYVEIFRSNRQEYYKAVANE----VFDARGGSPRRTAPRSKLND 203
           +QV+ ALQR+R N+GRRYVE+FR ++Q+YY AVA E     ++ R   P     R+K   
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60

Query: 204 EVKDFAEHTEDV---------------------------IHLTLNSEGRPSGEAFVEFAN 263
           E K+  E+TE +                           + +    +G+ +GEAFVEF  
Sbjct: 61  E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 120

Query: 264 EQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIGRGR 271
            ++++ AM+KD+M++GSRY+ELFP+++EE   A  R R
Sbjct: 121 GEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

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BLAST of CmaCh02G012520 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-14
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 358 GGYSTPKAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFF 409
           GG  TPKA++ RIPE+LTCPP PKKQR   +C  RR  I FFAPPE+ELFF
Sbjct: 52  GGCCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of CmaCh02G012520 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-10
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 315 SKLNKKMKKTTTKKPQQPQNQIPPP----QNDVVQ------FPDDDFDNDDVGGGYSTPK 374
           SK  K +++TTT++ ++   + P P     +DV         P        V        
Sbjct: 3   SKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCT 62

Query: 375 AERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFF 409
            E+ RIPE+LTCPP PKKQ+   +C+ RR  IAFFAPP++ELFF
Sbjct: 63  PEKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFF 106

The following BLAST results are available for this feature:

BLAST of CmaCh02G012520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52597	1.8e-19	36.11	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	1.8e-19	36.11	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9Z2X1	2.0e-18	35.56	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]
Q794E4	2.0e-18	35.56	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp...	[more]
Q5E9J1	2.6e-18	35.56	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]

BLAST of CmaCh02G012520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	1.1e-80	54.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	2.8e-44	40.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	1.3e-20	36.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20898.1	3.9e-14	66.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51355.1	4.5e-10	38.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..165 e-value: 0.12 score: 14.9 coord: 174..255 e-value: 0.055 score: 17.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 198..252 e-value: 2.8E-6 score: 27.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 87..182 e-value: 9.7E-18 score: 66.0 coord: 191..272 e-value: 6.9E-19 score: 69.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..346
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 208..270
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 208..270
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 44..208
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 44..208
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 87..174
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 199..270

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012520.1	CmaCh02G012520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding