CmaCh02G012280 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G012280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionBromo domain-containing protein
LocationCma_Chr02: 7238503 .. 7241602 (-)
RNA-Seq ExpressionCmaCh02G012280
SyntenyCmaCh02G012280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAATTCAATTCACCCTCTCTTTTTTTTTCGATAATTATATATATATATATATAAAAAAAAAAGGAAAAAAAACGAAAAGAAAAGAGGAAAGCCCTTTTGGATTCATTATTGTGTTTTGAATTCAATCCTCATAAACCCTAAATTCGAAATGGGAATGATGACGTGAGGAGGGTGGCTACGGACATGGTTGTGCAACGCGAAACCAACACCAAACCATGGGGAACGCTGGAGGAGCTCTTGCTCGCCTCCGCTGTTAACCGTCATGGCACCACAAGTTGGGACTCCGTCGCCATGGAAATACACAATCGATGCTCTCAATCCTCTTCTTCTCTAACTCCCCAAGATTGTAGGATCAAGTTCCACGACCTCAAGCGCCGATTCCTCTCCCAAAATGACCTCGATTCTGATTCCACCTCCCTCATGCCTATTCTCGAAGAGTTGAGGAAGATTCGGGTGGAGGAGCTCCGCCGCGATGTTCAACGTCGGGATGTCTTGATCGTGTAATATTCTTGCTCTTCCACTCAGAGATCTGACCCCGACTGATTGGTGGGTTTAGAGATCTGAAGATGTTTCCCCCTTTTTGTCTGTGTCGACAGGTCATTGGAAATGAAGGTGAAGCGGTTGGAGGAGGAGAGGGACCGGAGTTTCAACGAACCCGATGGGGGACCGGATCTGGACGTGAACGCCGTCGACACCAACCTCTGCCCGCTTAATCCCACGCCCTCCGGCGACGACTCCGACGATCGCGAGAACCGATCCCTGGACGAATCCAATTCCACGAGTAAAAAAAAAGAGGAGGGCGTTGGACAGAACGGCGTGGTTCGGGAGAGGCCGATATCCGAAACAGTCAAAATCACAAAAAAGAAGGAAACCGGGGCGGCACGAACCGGGGATGAACCGGAGGCAGAAAGAGAAAAGGAGTCTGCAGCGGGAGGAGGATATAAACGAAGGGAGAAAAAAGAAAGAAATTGGGGAAATTCGAAGGGGAAGGCGTCTGCGGTGGGCGATTCGAACGAAGCGTGGGAATCGGTGAGCGAGTCGAAGCAAGAAGGGACAGAGGGGGCGGTGGCGAAGCAGCAGAGCAGCGACGTACAAAGCTCAGCCGGTTTGTCCCAGAGGAAACGGTGTCGTAGCAGAGGAGGAAATGGAACTAGCAGCGGCGAAGAGCCCGAGGTATCTCCCGCCAAGCCCAAGCCCAAGCCCAACCCCAAGTCCAAGCCCAACCCCAAGCCCAACTCCAACCCTGCAGCCGTCAAATCTGAGCCGTTGCTCAAATTCCTGGAGATCATTCGCTCCCATCGGCTTGGCTCTGCCTTCGAGCGCCGTCTACGGAGCCAGGTACGTTCGCCCCATTTTCCTATTTTATATCAATTATAGTAAATAAAATAATAAAAAGGAAAAAAGAAAAAAGAAAAAAGGGAACGTAGAAAAAGTAACGTGTAAAGAAGGAATCACCCATAATCCATCATCCTCAAATAAGTCCAGGTGGATGTGAAATCCACGACTTTGTGCTTGGGGACGCGTGTCGTAGTCGTAGGACGTATAAGGACTTTTTTGTCATTCACGCTTAGAAAACGAGGGTATTTTGGTCCTCACGGTAGGTGACATCTTAGCCTTCTCACCTTCACACATAAGCATGCAATTGATACTTTTTTTTGTCATTCACCCTTCCGTTTCTTCAAACACTGCCAAAACAGCGTCGTTTAACCCTCAAATGGAAATTACTCGCTGCCCCAATCGCTAAATCAAGTCTAGCCCGTCATTGGCGGGTGGCCCAAAAGTTAAATATGGGTAAAATGGTAAATGTGATCACTGCTATTTCTATTTAAATTTTTTTTTATCATTCTCAACAATTAATATTTTTTAATGACATACCTGGCGATTCAGAAATATCCCAGCCGTTCATCTCTCAAACCGTTTCCGGTTCGACGAGATGGACTTGGATCCCGGTTTGAATCCAGTCTATCCGTACGGTTCAGAACGCTTTCCTAAACCCTTCTCCATCGGTGGAGGAACTGAGTGGACCCTCTCTTTAATTATCCATTGTTTTAATTGTGGCAGGAATCGGATAGATACAAAAAATTGATTCGGCAACACATCGATCTGAGAACGATTCATTCGAGAGTGGTGAAAGGTGCCTATGCGGATTCAATTCACCGGTTCTTCCGAGATCTCCTCCTCCTCTTCAACAATGCCGTCATCTTTTTCCACAGATCTTCCCCCGAAAATGGTGCCGCAGTGAAGCTTCGAGCTCTCGTGTTGAAAGAAATGAAAGACAGAATACGAAAGCCCCAACCCCCCATAGTCGCAAAATCAAAACCCAAGCAAGAAGCGGATGTGTCATCGTCCAAGCCCAGAAAGCCATCTGCTACCATGGTGGTGTGTCGCAAACGAGATTCTGTTTCTCAGACATCGGATGTGGGAGGCAAAAAATCGGAGAATAATTCAAGAGAGGGTGAAGGGAAGAGGAAGGGCAATGATTGTTCGGAGATAAAAATTTACGAGAAGGGTACATGGAAGAAGGGTTTGAATTTGAAAGAGAGGGGAAGACCGGGAGTGGGTAATTCGGGAGCGAGAAGCTGTAGAACAACGACGAACAAAAAGAACGGGGAAGTGAAGCACGAATACGGGGGGAACGAATTGAGCTCTCACGATGGGATGGGAGTTCGAATGGAAAAGAAAGAAAAAGAGAAAGGGACGAAGAAGAAGCAGGTGGCTGTGAGGTTCTTGAAGAGAATGAAGCAGAATTCTCCAAGCGAAGCCACGGACGAAGATGGCGATGGCTCAGAGGATGAGAGTTTAAAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAGAAGAAGAGGAAGATGAAGAAACAGAATGAAGGGAAAAGAGAAAGGGTAAGGCGGAGTGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGGGGAGAGGGAAGAGAGGGGTGGGGAGGCCGCCGAAGAAAGCCGAAACAGTGAGCGTAAAAAGGCAACAGAGGGAGGAGGTGGTAGGAGGGAGTAAACCCCGAAAGCGTTCAAGGAGATAA

mRNA sequence

AGAATTCAATTCACCCTCTCTTTTTTTTTCGATAATTATATATATATATATATAAAAAAAAAAGGAAAAAAAACGAAAAGAAAAGAGGAAAGCCCTTTTGGATTCATTATTGTGTTTTGAATTCAATCCTCATAAACCCTAAATTCGAAATGGGAATGATGACGTGAGGAGGGTGGCTACGGACATGGTTGTGCAACGCGAAACCAACACCAAACCATGGGGAACGCTGGAGGAGCTCTTGCTCGCCTCCGCTGTTAACCGTCATGGCACCACAAGTTGGGACTCCGTCGCCATGGAAATACACAATCGATGCTCTCAATCCTCTTCTTCTCTAACTCCCCAAGATTGTAGGATCAAGTTCCACGACCTCAAGCGCCGATTCCTCTCCCAAAATGACCTCGATTCTGATTCCACCTCCCTCATGCCTATTCTCGAAGAGTTGAGGAAGATTCGGGTGGAGGAGCTCCGCCGCGATGTTCAACGTCGGGATGTCTTGATCGTGTCATTGGAAATGAAGGTGAAGCGGTTGGAGGAGGAGAGGGACCGGAGTTTCAACGAACCCGATGGGGGACCGGATCTGGACGTGAACGCCGTCGACACCAACCTCTGCCCGCTTAATCCCACGCCCTCCGGCGACGACTCCGACGATCGCGAGAACCGATCCCTGGACGAATCCAATTCCACGAGTAAAAAAAAAGAGGAGGGCGTTGGACAGAACGGCGTGGTTCGGGAGAGGCCGATATCCGAAACAGTCAAAATCACAAAAAAGAAGGAAACCGGGGCGGCACGAACCGGGGATGAACCGGAGGCAGAAAGAGAAAAGGAGTCTGCAGCGGGAGGAGGATATAAACGAAGGGAGAAAAAAGAAAGAAATTGGGGAAATTCGAAGGGGAAGGCGTCTGCGGTGGGCGATTCGAACGAAGCGTGGGAATCGGTGAGCGAGTCGAAGCAAGAAGGGACAGAGGGGGCGGTGGCGAAGCAGCAGAGCAGCGACGTACAAAGCTCAGCCGGTTTGTCCCAGAGGAAACGGTGTCGTAGCAGAGGAGGAAATGGAACTAGCAGCGGCGAAGAGCCCGAGGTATCTCCCGCCAAGCCCAAGCCCAAGCCCAACCCCAAGTCCAAGCCCAACCCCAAGCCCAACTCCAACCCTGCAGCCGTCAAATCTGAGCCGTTGCTCAAATTCCTGGAGATCATTCGCTCCCATCGGCTTGGCTCTGCCTTCGAGCGCCGTCTACGGAGCCAGGAATCGGATAGATACAAAAAATTGATTCGGCAACACATCGATCTGAGAACGATTCATTCGAGAGTGGTGAAAGGTGCCTATGCGGATTCAATTCACCGGTTCTTCCGAGATCTCCTCCTCCTCTTCAACAATGCCGTCATCTTTTTCCACAGATCTTCCCCCGAAAATGGTGCCGCAGTGAAGCTTCGAGCTCTCGTGTTGAAAGAAATGAAAGACAGAATACGAAAGCCCCAACCCCCCATAGTCGCAAAATCAAAACCCAAGCAAGAAGCGGATGTGTCATCGTCCAAGCCCAGAAAGCCATCTGCTACCATGGTGGTGTGTCGCAAACGAGATTCTGTTTCTCAGACATCGGATGTGGGAGGCAAAAAATCGGAGAATAATTCAAGAGAGGGTGAAGGGAAGAGGAAGGGCAATGATTGTTCGGAGATAAAAATTTACGAGAAGGGTACATGGAAGAAGGGTTTGAATTTGAAAGAGAGGGGAAGACCGGGAGTGGGTAATTCGGGAGCGAGAAGCTGTAGAACAACGACGAACAAAAAGAACGGGGAAGTGAAGCACGAATACGGGGGGAACGAATTGAGCTCTCACGATGGGATGGGAGTTCGAATGGAAAAGAAAGAAAAAGAGAAAGGGACGAAGAAGAAGCAGGTGGCTGTGAGGTTCTTGAAGAGAATGAAGCAGAATTCTCCAAGCGAAGCCACGGACGAAGATGGCGATGGCTCAGAGGATGAGAGTTTAAAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAGAAGAAGAGGAAGATGAAGAAACAGAATGAAGGGAAAAGAGAAAGGGTAAGGCGGAGTGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGGGGAGAGGGAAGAGAGGGGTGGGGAGGCCGCCGAAGAAAGCCGAAACAGTGAGCGTAAAAAGGCAACAGAGGGAGGAGGTGGTAGGAGGGAGTAAACCCCGAAAGCGTTCAAGGAGATAA

Coding sequence (CDS)

ATGGTTGTGCAACGCGAAACCAACACCAAACCATGGGGAACGCTGGAGGAGCTCTTGCTCGCCTCCGCTGTTAACCGTCATGGCACCACAAGTTGGGACTCCGTCGCCATGGAAATACACAATCGATGCTCTCAATCCTCTTCTTCTCTAACTCCCCAAGATTGTAGGATCAAGTTCCACGACCTCAAGCGCCGATTCCTCTCCCAAAATGACCTCGATTCTGATTCCACCTCCCTCATGCCTATTCTCGAAGAGTTGAGGAAGATTCGGGTGGAGGAGCTCCGCCGCGATGTTCAACGTCGGGATGTCTTGATCGTGTCATTGGAAATGAAGGTGAAGCGGTTGGAGGAGGAGAGGGACCGGAGTTTCAACGAACCCGATGGGGGACCGGATCTGGACGTGAACGCCGTCGACACCAACCTCTGCCCGCTTAATCCCACGCCCTCCGGCGACGACTCCGACGATCGCGAGAACCGATCCCTGGACGAATCCAATTCCACGAGTAAAAAAAAAGAGGAGGGCGTTGGACAGAACGGCGTGGTTCGGGAGAGGCCGATATCCGAAACAGTCAAAATCACAAAAAAGAAGGAAACCGGGGCGGCACGAACCGGGGATGAACCGGAGGCAGAAAGAGAAAAGGAGTCTGCAGCGGGAGGAGGATATAAACGAAGGGAGAAAAAAGAAAGAAATTGGGGAAATTCGAAGGGGAAGGCGTCTGCGGTGGGCGATTCGAACGAAGCGTGGGAATCGGTGAGCGAGTCGAAGCAAGAAGGGACAGAGGGGGCGGTGGCGAAGCAGCAGAGCAGCGACGTACAAAGCTCAGCCGGTTTGTCCCAGAGGAAACGGTGTCGTAGCAGAGGAGGAAATGGAACTAGCAGCGGCGAAGAGCCCGAGGTATCTCCCGCCAAGCCCAAGCCCAAGCCCAACCCCAAGTCCAAGCCCAACCCCAAGCCCAACTCCAACCCTGCAGCCGTCAAATCTGAGCCGTTGCTCAAATTCCTGGAGATCATTCGCTCCCATCGGCTTGGCTCTGCCTTCGAGCGCCGTCTACGGAGCCAGGAATCGGATAGATACAAAAAATTGATTCGGCAACACATCGATCTGAGAACGATTCATTCGAGAGTGGTGAAAGGTGCCTATGCGGATTCAATTCACCGGTTCTTCCGAGATCTCCTCCTCCTCTTCAACAATGCCGTCATCTTTTTCCACAGATCTTCCCCCGAAAATGGTGCCGCAGTGAAGCTTCGAGCTCTCGTGTTGAAAGAAATGAAAGACAGAATACGAAAGCCCCAACCCCCCATAGTCGCAAAATCAAAACCCAAGCAAGAAGCGGATGTGTCATCGTCCAAGCCCAGAAAGCCATCTGCTACCATGGTGGTGTGTCGCAAACGAGATTCTGTTTCTCAGACATCGGATGTGGGAGGCAAAAAATCGGAGAATAATTCAAGAGAGGGTGAAGGGAAGAGGAAGGGCAATGATTGTTCGGAGATAAAAATTTACGAGAAGGGTACATGGAAGAAGGGTTTGAATTTGAAAGAGAGGGGAAGACCGGGAGTGGGTAATTCGGGAGCGAGAAGCTGTAGAACAACGACGAACAAAAAGAACGGGGAAGTGAAGCACGAATACGGGGGGAACGAATTGAGCTCTCACGATGGGATGGGAGTTCGAATGGAAAAGAAAGAAAAAGAGAAAGGGACGAAGAAGAAGCAGGTGGCTGTGAGGTTCTTGAAGAGAATGAAGCAGAATTCTCCAAGCGAAGCCACGGACGAAGATGGCGATGGCTCAGAGGATGAGAGTTTAAAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAGAAGAAGAGGAAGATGAAGAAACAGAATGAAGGGAAAAGAGAAAGGGTAAGGCGGAGTGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGGGGAGAGGGAAGAGAGGGGTGGGGAGGCCGCCGAAGAAAGCCGAAACAGTGAGCGTAAAAAGGCAACAGAGGGAGGAGGTGGTAGGAGGGAGTAAACCCCGAAAGCGTTCAAGGAGATAA

Protein sequence

MVVQRETNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRFLSQNDLDSDSTSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDRSFNEPDGGPDLDVNAVDTNLCPLNPTPSGDDSDDRENRSLDESNSTSKKKEEGVGQNGVVRERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKASAVGDSNEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEEPEVSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRYKKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRALVLKEMKDRIRKPQPPIVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSDVGGKKSENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTNKKNGEVKHEYGGNELSSHDGMGVRMEKKEKEKGTKKKQVAVRFLKRMKQNSPSEATDEDGDGSEDESLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGKRERVRRSGGGGGGGGGGGRGGGRGKRGVGRPPKKAETVSVKRQQREEVVGGSKPRKRSRR
Homology
BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT2G44430.1 (DNA-binding bromodomain-containing protein )

HSP 1 Score: 150.6 bits (379), Expect = 4.7e-36
Identity = 210/680 (30.88%), Postives = 312/680 (45.88%), Query Frame = 0

Query: 5   RETNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKR 64
           +++ T+ WGT EELLLA AV RHG   WDSVA E+ +R S S    +  DCR K+ DLKR
Sbjct: 43  KKSQTQAWGTWEELLLACAVKRHGFGDWDSVATEVRSRSSLSHLLASANDCRHKYRDLKR 102

Query: 65  RFLSQNDLDSDST------------SLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKV 124
           RF  Q   D  +T            + +P LE+LR +RV ELRR+V+R D  I+SL++KV
Sbjct: 103 RFHEQEKTDVTATVEEEEEEEERVGNNIPWLEQLRNLRVAELRREVERYDCSILSLQLKV 162

Query: 125 KRLEEERDRSFNEPDGGPDLDVNAVDTNLCP---LNPTPSGDDSDDRENRSLDESNSTSK 184
           K+LEEER+    +PD   +      + +           S  +  DRENRS++ESNST+ 
Sbjct: 163 KKLEEEREVGEEKPDLENERKEERSENDGSESEHREKAVSAAEESDRENRSMNESNSTAT 222

Query: 185 KKEEGVGQNGVVRERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKER 244
             EE              E V             GDEP   RE +S              
Sbjct: 223 AGEE--------------ERV------------CGDEPSQTREDDS-------------- 282

Query: 245 NWGNSKGKASAVGDSNEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGN 304
             GN K       +     ++ +  ++EG+    ++   SD    +G S+ K  R R   
Sbjct: 283 --GNDKNPDPDPVNK----DATAAEEEEGSVSRGSEASHSDELGESGTSESKWKRKRRKQ 342

Query: 305 GTSSGEEPEVSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERR 364
           G  +GE                           A  KS+PL+  L++IRSH  GS FERR
Sbjct: 343 G-GAGE------------------------IRSAESKSQPLISLLDLIRSHPRGSLFERR 402

Query: 365 LRSQESDRYKKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPEN 424
           LRSQE+  YK +++QH+D+ TI  ++ +G+Y  S   F+RDL LLF NA++FF  SS E+
Sbjct: 403 LRSQEAKDYKSMVKQHLDIETIQRKLKQGSYDSSSLIFYRDLQLLFTNAIVFFPLSSSES 462

Query: 425 GAAVKLRALVLKEMKDRIRKPQPPIVAK-------SKPKQEADVSSSKPRKPSATMVVCR 484
            AA +LRA+V +EM+    K  P ++ +        K   E   SS   +K S  +VVC+
Sbjct: 463 MAAHELRAVVSQEMRKETGKAGPRLIKQEASGMRSGKADAETSDSSLSRQKSSGPLVVCK 522

Query: 485 KRDSVS---QTSDVGGKKSENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGV 544
           KR SVS     S     + ++   E   + K N  + ++   +   K    +    + G 
Sbjct: 523 KRRSVSAKASPSSSSFSQKDDTKEETLSEEKDNIATGVRSSRRAN-KVAAVVANNTKTGK 582

Query: 545 GNSGARSCRTTTNKKNGEVKHEYGGNELSSHDGMGVRMEKKEKEKGTKKKQVAVRFLKRM 604
           G +  +   + TN  N     +  G              +K+     KKK VA  FLKR+
Sbjct: 583 GRNKQKQTESKTNSSNDNSSKQDTGK------------TEKKTVSADKKKSVA-DFLKRL 634

Query: 605 KQNSP-SEATDEDGDGSEDESLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGK 659
           K+NSP  EA D++  G    ++K++ + +  E       +++ E E    ++   + + K
Sbjct: 643 KKNSPQKEAKDQNKSGG---NVKKDSKTKPRELRSSSVGKKKAEVENTPVKRAPGRPQKK 634

BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT3G60110.1 (DNA-binding bromodomain-containing protein )

HSP 1 Score: 145.2 bits (365), Expect = 2.0e-34
Identity = 209/700 (29.86%), Postives = 333/700 (47.57%), Query Frame = 0

Query: 12  WGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRFLSQND 71
           WGT EEL+L  AV RH  + WDSVA E+  R S+SS  ++  +CR+K+ DLKRRF    D
Sbjct: 52  WGTWEELVLTCAVKRHAFSDWDSVAKEVQAR-SRSSLIVSAVNCRLKYQDLKRRFQDSVD 111

Query: 72  LDSDSTSL----------MPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDR 131
           +  ++T            +  LE+LR + + ELRR+VQR D  I+SL++KVK+LEEE+D 
Sbjct: 112 VGDENTEAAANEEDEVGEISWLEQLRSLHMAELRREVQRCDDSILSLQLKVKKLEEEKDG 171

Query: 132 SFNEPDGGPDLDVNAVDTNLCPLNPTPSGDDSDDRENRSLDESNSTSKKKEEGVGQNGVV 191
             ++ D  PDL     +    P+       +SD  +NRS++ESNST+   +        +
Sbjct: 172 --DDGDNKPDLK----NDETKPVRVNRETTESDRDDNRSMNESNSTASVDK--------I 231

Query: 192 RERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKASAV 251
            +    +  K+ K  E        +P+   + E+         E++ER    +  K S +
Sbjct: 232 ADHDRLDGDKMVKANENS---RNPDPDPVNKAETP--------EEEER----TVSKRSEM 291

Query: 252 GDSNEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEEPEVSP 311
            +S E  ES       GT   + K++    +S  G          GG   S+G+      
Sbjct: 292 SNSGELDES-------GTSNCLGKRKGQKYRSGGG----------GGGVKSAGD------ 351

Query: 312 AKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRYKKL 371
                                   KS+PL+  +++IRSH  GS FE RLRSQ++  YK+L
Sbjct: 352 ------------------------KSQPLIDIIKLIRSHPRGSVFESRLRSQDTKDYKRL 411

Query: 372 IRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRALVLK 431
           IRQH+D++TI  ++ KG+Y  S   F+RDL LLF NA++FF  SS E+ AA +LR LV  
Sbjct: 412 IRQHLDMKTIEKKMEKGSYVSSSLSFYRDLKLLFTNAIVFFPTSSSESIAAQELRTLVSN 471

Query: 432 EMKDRIRKPQPPIVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSDVGGKKSENN 491
           EMK R  K    ++     K EA+ S S+ +    ++V C+K+ S  +      K S ++
Sbjct: 472 EMKKRTGKLGHCVI-----KSEAESSVSRQKSSVLSLVPCKKKSSALK------KTSPSS 531

Query: 492 SREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTNKKNGEVKHE 551
           S   + ++K  + SE KI          + +   +         +  T T +    +K +
Sbjct: 532 SSRQKDEKKSQEVSEEKIVTTTATTSARSSRRTSK----EIAVVAKDTKTGRAKNNIKKQ 591

Query: 552 YGGNELSSHDGMGVRMEKKEKEKGT---KKKQVAVRFLKRMKQNSPSEATDEDGDGSEDE 611
                 SS D    + E  + EK T   KKK VA  FLKR+K+NSP +  +     S+++
Sbjct: 592 TDTKTESSDDDDDEKEENSKTEKKTVADKKKSVA-DFLKRIKKNSPQKGKETT---SKNQ 641

Query: 612 SLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGKRERVRRSGGGGGGGGGGGRG 671
              +   ++E + +++ +   ++E  + K R+++     K+  V  +             
Sbjct: 652 KKNDGNVKKENDHQKKSDGNVKKENSKVKPRELRSSTGKKKVEVENNNSKSS-------- 641

Query: 672 GGRGKRGVGRPPKKAETVSVKRQQREEVVGGSKPRKRSRR 699
               KR   +  K+   V+  ++ RE      +PRKRSRR
Sbjct: 712 ---SKR---KQTKETAEVATGKRGRESGKDDKQPRKRSRR 641

BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT3G57980.1 (DNA-binding bromodomain-containing protein )

HSP 1 Score: 140.2 bits (352), Expect = 6.3e-33
Identity = 232/710 (32.68%), Postives = 335/710 (47.18%), Query Frame = 0

Query: 15  LEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRF----LSQN 74
           +EELLLA AV+RHGT SWDSVA E+H + + +  +LT  DCR K++DLKRRF    +S  
Sbjct: 1   MEELLLACAVHRHGTDSWDSVASEVHKQ-NSTFRTLTAIDCRHKYNDLKRRFSRNLVSPG 60

Query: 75  DLDSDS----TSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDRSFNEP 134
             D ++     S +P LEELRK+RV+ELRR+V+R D+ I SL++KVK LE+ER++S    
Sbjct: 61  SADEETLAAEISSVPWLEELRKLRVDELRREVERYDLSISSLQLKVKTLEDEREKSLKTE 120

Query: 135 DGGPDLDVNAVDTNLCPLNPTPSGDDS--DDRENRSLDESNSTSKKKEEGVGQNGVVRER 194
           +   DLD  A        N T SG++S     E ++  + N  S     G G     R  
Sbjct: 121 NS--DLDRIAETKE----NHTESGNNSGVPVTELKNSPDPNDNS----PGTGSENTNR-- 180

Query: 195 PISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKASAVGDS 254
                VKI +  +    R G E   E+     +G G      KE +    K + +   DS
Sbjct: 181 ----AVKIAEPVDEEPNRIGGEDNDEKPAREDSGRGSCESVAKESDRAEPKREGN---DS 240

Query: 255 NEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEEPEVSPAKP 314
            E  ES+ ESK     G    +++SD QSSA                            P
Sbjct: 241 PELVESMDESK-----GEEDTKETSDGQSSASF--------------------------P 300

Query: 315 KPKPNPKSKPNPKPNS---NPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRYKKL 374
           + +   + +P+ K  S   N   V+S+PL  F+EI++SH +GS F RRL +QE+  Y ++
Sbjct: 301 RKETVDQDQPDNKDQSLTVNKIFVESQPLSDFIEILQSHPIGSHFSRRLETQETSDYYRI 360

Query: 375 IRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRALVLK 434
           IRQHID   I SRV +G Y  +  +FFRDLLLL NN  +F+   SPE  AA +L  L+ K
Sbjct: 361 IRQHIDFEMIRSRVEEGYYKTARTKFFRDLLLLINNVRVFYGEPSPEFNAAKQLYQLIKK 420

Query: 435 EMKDRIRK---PQPPIVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSDVGGKKS 494
           +M  +I K   P P   A    K+E  VSS KP   S  ++ CRKR S++  S     ++
Sbjct: 421 QMSFKIPKQTLPPPKEDALVTSKEEVKVSSLKPTL-SVPIIACRKRSSLAVRSPASVTET 480

Query: 495 ENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTNKKNG-- 554
                    K+K      +   +    ++G    +  +P V    AR    +T KK G  
Sbjct: 481 L--------KKKTRVVPTVDEKQVSEEEEGRPSDKDEKPIVSKKMARGAAPSTAKKVGSR 540

Query: 555 EVKHEYG---GNELSSHDGMGVRMEKKEKEKGT-----KKKQVAVRFLKRMKQNSPSEAT 614
            VK        N   S +G  V  +  +++KG       KKQ A  FLKRMK  S SE  
Sbjct: 541 NVKTSLNAGISNRGRSPNGSSVLKKSVQQKKGINTSGGSKKQSAASFLKRMKGVSSSETV 600

Query: 615 DEDGDGSEDESLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGKRERVRRSGGG 674
                    E++K E    +   E+ +   + E+ +  K    +K+  GKR  + +    
Sbjct: 601 --------VETVKAESSNGKRGAEQRKSNSKSEKVDAVKLPAGQKRLTGKRPTIEK---- 632

Query: 675 GGGGGGGGRGGGRGKRGVGRPPKKAETVSVKRQQREEVVGGSKPRKRSRR 699
             G       G   KRG      K ++        +E    ++P+KRS+R
Sbjct: 661 --GSPTKKNSGVASKRGTASLMAKRDS----ETSEKETGSSTRPKKRSKR 632

BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT2G42150.1 (DNA-binding bromodomain-containing protein )

HSP 1 Score: 123.6 bits (309), Expect = 6.1e-28
Identity = 223/734 (30.38%), Postives = 329/734 (44.82%), Query Frame = 0

Query: 7   TNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRF 66
           T  + W T EELLLA AV+RHGT SW+SV+ EI  + S +  SLT   CR K+ DLK RF
Sbjct: 11  TEKQTWSTWEELLLACAVHRHGTESWNSVSAEI-QKLSPNLCSLTASACRHKYFDLKSRF 70

Query: 67  LSQNDLDSD--STSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDRSFN 126
             +  +       S  P LEELRK+RV+ELRR+V++ D+ I +L+ KVK+LEEER+ SF 
Sbjct: 71  TQELPVPESVAEISTAPWLEELRKLRVDELRREVEQYDLSISTLQSKVKQLEEEREMSFI 130

Query: 127 EPDGGPDLDVNAVDTNLCPLNPTPSGDDSDDRENRSLDESNSTSKKKEEGVGQNGVVRER 186
           +PD                           + EN  L+       +K+E       V   
Sbjct: 131 KPD--------------------------TETENLDLE-------RKKERSDSGEPVPNP 190

Query: 187 PI---SETVKITKKKETGAARTGDEPEAEREKESA-AGGGYKRREKKERNWGNSKGKASA 246
           P+   +ET+     KE G+  T      ERE+E A +GGG  +   ++   G+ +     
Sbjct: 191 PVQLMNETIS-PDPKEIGSENT------EREEEMAGSGGGESKLAGEDSCRGSCESVEKE 250

Query: 247 VGDSNEAWESVSESKQ-EGTEGAVAKQQ-SSDVQSSAGLSQRKRCRSRGGNGTSSGEEPE 306
              ++E  E VS ++  E  +GA   ++ +SDVQSSA L ++         GTS  ++ +
Sbjct: 251 PTTNSERVEPVSVTELIESEDGASRGEEITSDVQSSASLPRK---------GTSEPDKED 310

Query: 307 VSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRY 366
            SP   K                   V+S+PL+ F+EI+ SH  GS F RRL  QE+  Y
Sbjct: 311 QSPTSAK----------------DFTVESQPLISFVEILLSHPCGSHFSRRLERQETIEY 370

Query: 367 KKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRAL 426
             +IR+H+D   I  RV  G Y      FFRDLLLL NNA +F+HR S E   A +L  L
Sbjct: 371 GTIIREHVDFEIIRKRVEGGLYKSWRINFFRDLLLLVNNARVFYHRGSSEFKFAEQLHQL 430

Query: 427 VLKEMKDRIR-KPQPPIVAKSKPKQE------ADVSSSKPRKPSATMVVCRKRDSVSQT- 486
           V K+M   ++       ++ S PK+E      +   SSKPR     +V CRKR +++   
Sbjct: 431 VKKQMTTTLKGLSNRDEISISPPKEEVVAIPSSKPVSSKPRMSVPNIVACRKRSALAAKP 490

Query: 487 -------SDVGGKKSEN---------NSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKER 546
                   D   KK+++         + ++GE   K +D S I           + +  R
Sbjct: 491 LLLLPPGPDKKAKKTDHVVDYDEKPVSDKDGEASGKDDDDSLI-----------VKIMTR 550

Query: 547 GRPGVGNSGARSCRTTTNKKNGEVKHEYGGNELSSHDGMGVRMEKKEKEKGTKKKQVAVR 606
           GR    ++G  + R   N+           + L+  D      +  E++KG  KK+ A  
Sbjct: 551 GR--TSSTGKVANRNDKNR----------DSSLNVDDSKDKVKKTDEEKKGGSKKKRAAS 610

Query: 607 FLKRMKQNSPSEATDEDGDGSEDESLKEEEEEEEEEEEE---EEEEEEEEEEEEEKKRKM 666
           FL+RMK             GS D++LK     +     +    E+ +    + + KK  +
Sbjct: 611 FLRRMKV------------GSSDDTLKRSSAADSSTTGKGGGAEQRKNNSNKADNKKTPI 631

Query: 667 KK--QNEGKRERVRRSGGGGGGGGGGGRGGGRGKRGVGRPPKKAETVSVKRQQ---REEV 699
            K  Q   K   V+RS              GR       P   +  +  KR +    +E 
Sbjct: 671 PKIRQTNKKASPVKRS------------NNGRNSEREAAPSSSSYPILAKRSRDAGEKEE 631

BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT1G61215.1 (bromodomain 4 )

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-18
Identity = 149/543 (27.44%), Postives = 223/543 (41.07%), Query Frame = 0

Query: 1   MVVQRETNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFH 60
           MV+   T    WGT EELLL  AV RHGT  W  VA E+  R        TP+ C+ K+ 
Sbjct: 3   MVMMTTTMESDWGTWEELLLGGAVLRHGTGDWTVVADEL--RSHSLPEIFTPEICKAKYK 62

Query: 61  DLKRRFLSQNDLDSDSTSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERD 120
           DL++R++                EEL+K RV EL+  + + +  I SLE K++ L+ E +
Sbjct: 63  DLRKRYV----------GCKAWFEELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESN 122

Query: 121 RSFNEPDGGPDLDVNAVDTNLCPLNPTPSGDDSDD--RENRSLDESNSTSKKKEEGVGQN 180
              ++         N   +    L P+P  +   +   ++ S D S+  S  ++E    N
Sbjct: 123 DECHQN--------NYDSSRTLSLEPSPKSEGGGECTSKDTSKDLSSVGSFTQQELTTTN 182

Query: 181 GVVRERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKA 240
                +  SE   + ++++T      D        ES  GGG +      +  G  K K 
Sbjct: 183 WSPEAK--SEAPVVIEQEKTKDLLHND------IFESVYGGGGQVLPSMRKKRGKRKRKD 242

Query: 241 SAVGDSNEAWE--SVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEE 300
            +V    E  E  +V ES    T        S+D+ S          RS+    TSS + 
Sbjct: 243 CSVSVGKEVMEVSAVEESDLFDT--------SADIASI--------YRSKEAASTSSSQS 302

Query: 301 PEVSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESD 360
              S A PK                        L+K    I  +     F RRL SQ+  
Sbjct: 303 RGHSLALPK-----------------------ELMKIYNTIAQNECALVFRRRLDSQKRG 362

Query: 361 RYKKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLR 420
           RYKKL+R+H+DL T+ SR + G    S    FRD LL+ NNA IF+ +++ E  +AV LR
Sbjct: 363 RYKKLVRRHMDLDTVQSR-INGCSISSAKELFRDFLLVANNAAIFYSKNTREYKSAVGLR 422

Query: 421 ALVLKEMKDRIRKPQPP----IVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSD 480
            +V K ++  + +  PP    I A S         S+ P     ++   + R        
Sbjct: 423 DIVTKSLRHYLTEDHPPHRSSITAGSTKVVVLHQKSTSP-SVRTSLAAKKPRTGAHPLKT 472

Query: 481 VGGKKSENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTN 536
           V    ++ +SR    KR   D     +      KKG  +++ GR    N G  S      
Sbjct: 483 VVQDMAKTSSR--GNKRSVTDLPVSAVKSSAAGKKGTAVRKDGRQ--ANRGLESPALMGR 472

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT2G44430.14.7e-3630.88DNA-binding bromodomain-containing protein [more]
AT3G60110.12.0e-3429.86DNA-binding bromodomain-containing protein [more]
AT3G57980.16.3e-3332.68DNA-binding bromodomain-containing protein [more]
AT2G42150.16.1e-2830.38DNA-binding bromodomain-containing protein [more]
AT1G61215.13.4e-1827.44bromodomain 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 594..641
NoneNo IPR availableCOILSCoilCoilcoord: 105..125
NoneNo IPR availableGENE3D1.10.10.60coord: 3..73
e-value: 7.3E-6
score: 27.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 532..570
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 462..476
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 510..698
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 429..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 625..645
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 477..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 589..624
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 667..691
NoneNo IPR availablePANTHERPTHR37888DNA-BINDING BROMODOMAIN-CONTAINING PROTEINcoord: 1..698
NoneNo IPR availablePANTHERPTHR37888:SF8BINDING PROTEIN, PUTATIVE-RELATEDcoord: 1..698
NoneNo IPR availableCDDcd04369Bromodomaincoord: 330..423
e-value: 6.39845E-15
score: 68.9382
IPR001487BromodomainSMARTSM00297bromo_6coord: 97..428
e-value: 5.0E-14
score: 62.6
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 333..408
e-value: 5.4E-9
score: 36.0
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 338..409
score: 10.967
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..65
e-value: 2.2E-5
score: 33.9
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 4..63
score: 6.539188
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 11..63
e-value: 1.10914E-4
score: 38.3254
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 326..438
e-value: 5.1E-14
score: 53.8
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 303..431
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 9..62
e-value: 2.9E-7
score: 30.6
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 6..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G012280.1CmaCh02G012280.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity