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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. AGAATTCAATTCACCCTCTCTTTTTTTTTCGATAATTATATATATATATATATAAAAAAAAAAGGAAAAAAAACGAAAAGAAAAGAGGAAAGCCCTTTTGGATTCATTATTGTGTTTTGAATTCAATCCTCATAAACCCTAAATTCGAAATGGGAATGATGACGTGAGGAGGGTGGCTACGGACATGGTTGTGCAACGCGAAACCAACACCAAACCATGGGGAACGCTGGAGGAGCTCTTGCTCGCCTCCGCTGTTAACCGTCATGGCACCACAAGTTGGGACTCCGTCGCCATGGAAATACACAATCGATGCTCTCAATCCTCTTCTTCTCTAACTCCCCAAGATTGTAGGATCAAGTTCCACGACCTCAAGCGCCGATTCCTCTCCCAAAATGACCTCGATTCTGATTCCACCTCCCTCATGCCTATTCTCGAAGAGTTGAGGAAGATTCGGGTGGAGGAGCTCCGCCGCGATGTTCAACGTCGGGATGTCTTGATCGTGTAATATTCTTGCTCTTCCACTCAGAGATCTGACCCCGACTGATTGGTGGGTTTAGAGATCTGAAGATGTTTCCCCCTTTTTGTCTGTGTCGACAGGTCATTGGAAATGAAGGTGAAGCGGTTGGAGGAGGAGAGGGACCGGAGTTTCAACGAACCCGATGGGGGACCGGATCTGGACGTGAACGCCGTCGACACCAACCTCTGCCCGCTTAATCCCACGCCCTCCGGCGACGACTCCGACGATCGCGAGAACCGATCCCTGGACGAATCCAATTCCACGAGTAAAAAAAAAGAGGAGGGCGTTGGACAGAACGGCGTGGTTCGGGAGAGGCCGATATCCGAAACAGTCAAAATCACAAAAAAGAAGGAAACCGGGGCGGCACGAACCGGGGATGAACCGGAGGCAGAAAGAGAAAAGGAGTCTGCAGCGGGAGGAGGATATAAACGAAGGGAGAAAAAAGAAAGAAATTGGGGAAATTCGAAGGGGAAGGCGTCTGCGGTGGGCGATTCGAACGAAGCGTGGGAATCGGTGAGCGAGTCGAAGCAAGAAGGGACAGAGGGGGCGGTGGCGAAGCAGCAGAGCAGCGACGTACAAAGCTCAGCCGGTTTGTCCCAGAGGAAACGGTGTCGTAGCAGAGGAGGAAATGGAACTAGCAGCGGCGAAGAGCCCGAGGTATCTCCCGCCAAGCCCAAGCCCAAGCCCAACCCCAAGTCCAAGCCCAACCCCAAGCCCAACTCCAACCCTGCAGCCGTCAAATCTGAGCCGTTGCTCAAATTCCTGGAGATCATTCGCTCCCATCGGCTTGGCTCTGCCTTCGAGCGCCGTCTACGGAGCCAGGTACGTTCGCCCCATTTTCCTATTTTATATCAATTATAGTAAATAAAATAATAAAAAGGAAAAAAGAAAAAAGAAAAAAGGGAACGTAGAAAAAGTAACGTGTAAAGAAGGAATCACCCATAATCCATCATCCTCAAATAAGTCCAGGTGGATGTGAAATCCACGACTTTGTGCTTGGGGACGCGTGTCGTAGTCGTAGGACGTATAAGGACTTTTTTGTCATTCACGCTTAGAAAACGAGGGTATTTTGGTCCTCACGGTAGGTGACATCTTAGCCTTCTCACCTTCACACATAAGCATGCAATTGATACTTTTTTTTGTCATTCACCCTTCCGTTTCTTCAAACACTGCCAAAACAGCGTCGTTTAACCCTCAAATGGAAATTACTCGCTGCCCCAATCGCTAAATCAAGTCTAGCCCGTCATTGGCGGGTGGCCCAAAAGTTAAATATGGGTAAAATGGTAAATGTGATCACTGCTATTTCTATTTAAATTTTTTTTTATCATTCTCAACAATTAATATTTTTTAATGACATACCTGGCGATTCAGAAATATCCCAGCCGTTCATCTCTCAAACCGTTTCCGGTTCGACGAGATGGACTTGGATCCCGGTTTGAATCCAGTCTATCCGTACGGTTCAGAACGCTTTCCTAAACCCTTCTCCATCGGTGGAGGAACTGAGTGGACCCTCTCTTTAATTATCCATTGTTTTAATTGTGGCAGGAATCGGATAGATACAAAAAATTGATTCGGCAACACATCGATCTGAGAACGATTCATTCGAGAGTGGTGAAAGGTGCCTATGCGGATTCAATTCACCGGTTCTTCCGAGATCTCCTCCTCCTCTTCAACAATGCCGTCATCTTTTTCCACAGATCTTCCCCCGAAAATGGTGCCGCAGTGAAGCTTCGAGCTCTCGTGTTGAAAGAAATGAAAGACAGAATACGAAAGCCCCAACCCCCCATAGTCGCAAAATCAAAACCCAAGCAAGAAGCGGATGTGTCATCGTCCAAGCCCAGAAAGCCATCTGCTACCATGGTGGTGTGTCGCAAACGAGATTCTGTTTCTCAGACATCGGATGTGGGAGGCAAAAAATCGGAGAATAATTCAAGAGAGGGTGAAGGGAAGAGGAAGGGCAATGATTGTTCGGAGATAAAAATTTACGAGAAGGGTACATGGAAGAAGGGTTTGAATTTGAAAGAGAGGGGAAGACCGGGAGTGGGTAATTCGGGAGCGAGAAGCTGTAGAACAACGACGAACAAAAAGAACGGGGAAGTGAAGCACGAATACGGGGGGAACGAATTGAGCTCTCACGATGGGATGGGAGTTCGAATGGAAAAGAAAGAAAAAGAGAAAGGGACGAAGAAGAAGCAGGTGGCTGTGAGGTTCTTGAAGAGAATGAAGCAGAATTCTCCAAGCGAAGCCACGGACGAAGATGGCGATGGCTCAGAGGATGAGAGTTTAAAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAGAAGAAGAGGAAGATGAAGAAACAGAATGAAGGGAAAAGAGAAAGGGTAAGGCGGAGTGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGGGGAGAGGGAAGAGAGGGGTGGGGAGGCCGCCGAAGAAAGCCGAAACAGTGAGCGTAAAAAGGCAACAGAGGGAGGAGGTGGTAGGAGGGAGTAAACCCCGAAAGCGTTCAAGGAGATAA mRNA sequence AGAATTCAATTCACCCTCTCTTTTTTTTTCGATAATTATATATATATATATATAAAAAAAAAAGGAAAAAAAACGAAAAGAAAAGAGGAAAGCCCTTTTGGATTCATTATTGTGTTTTGAATTCAATCCTCATAAACCCTAAATTCGAAATGGGAATGATGACGTGAGGAGGGTGGCTACGGACATGGTTGTGCAACGCGAAACCAACACCAAACCATGGGGAACGCTGGAGGAGCTCTTGCTCGCCTCCGCTGTTAACCGTCATGGCACCACAAGTTGGGACTCCGTCGCCATGGAAATACACAATCGATGCTCTCAATCCTCTTCTTCTCTAACTCCCCAAGATTGTAGGATCAAGTTCCACGACCTCAAGCGCCGATTCCTCTCCCAAAATGACCTCGATTCTGATTCCACCTCCCTCATGCCTATTCTCGAAGAGTTGAGGAAGATTCGGGTGGAGGAGCTCCGCCGCGATGTTCAACGTCGGGATGTCTTGATCGTGTCATTGGAAATGAAGGTGAAGCGGTTGGAGGAGGAGAGGGACCGGAGTTTCAACGAACCCGATGGGGGACCGGATCTGGACGTGAACGCCGTCGACACCAACCTCTGCCCGCTTAATCCCACGCCCTCCGGCGACGACTCCGACGATCGCGAGAACCGATCCCTGGACGAATCCAATTCCACGAGTAAAAAAAAAGAGGAGGGCGTTGGACAGAACGGCGTGGTTCGGGAGAGGCCGATATCCGAAACAGTCAAAATCACAAAAAAGAAGGAAACCGGGGCGGCACGAACCGGGGATGAACCGGAGGCAGAAAGAGAAAAGGAGTCTGCAGCGGGAGGAGGATATAAACGAAGGGAGAAAAAAGAAAGAAATTGGGGAAATTCGAAGGGGAAGGCGTCTGCGGTGGGCGATTCGAACGAAGCGTGGGAATCGGTGAGCGAGTCGAAGCAAGAAGGGACAGAGGGGGCGGTGGCGAAGCAGCAGAGCAGCGACGTACAAAGCTCAGCCGGTTTGTCCCAGAGGAAACGGTGTCGTAGCAGAGGAGGAAATGGAACTAGCAGCGGCGAAGAGCCCGAGGTATCTCCCGCCAAGCCCAAGCCCAAGCCCAACCCCAAGTCCAAGCCCAACCCCAAGCCCAACTCCAACCCTGCAGCCGTCAAATCTGAGCCGTTGCTCAAATTCCTGGAGATCATTCGCTCCCATCGGCTTGGCTCTGCCTTCGAGCGCCGTCTACGGAGCCAGGAATCGGATAGATACAAAAAATTGATTCGGCAACACATCGATCTGAGAACGATTCATTCGAGAGTGGTGAAAGGTGCCTATGCGGATTCAATTCACCGGTTCTTCCGAGATCTCCTCCTCCTCTTCAACAATGCCGTCATCTTTTTCCACAGATCTTCCCCCGAAAATGGTGCCGCAGTGAAGCTTCGAGCTCTCGTGTTGAAAGAAATGAAAGACAGAATACGAAAGCCCCAACCCCCCATAGTCGCAAAATCAAAACCCAAGCAAGAAGCGGATGTGTCATCGTCCAAGCCCAGAAAGCCATCTGCTACCATGGTGGTGTGTCGCAAACGAGATTCTGTTTCTCAGACATCGGATGTGGGAGGCAAAAAATCGGAGAATAATTCAAGAGAGGGTGAAGGGAAGAGGAAGGGCAATGATTGTTCGGAGATAAAAATTTACGAGAAGGGTACATGGAAGAAGGGTTTGAATTTGAAAGAGAGGGGAAGACCGGGAGTGGGTAATTCGGGAGCGAGAAGCTGTAGAACAACGACGAACAAAAAGAACGGGGAAGTGAAGCACGAATACGGGGGGAACGAATTGAGCTCTCACGATGGGATGGGAGTTCGAATGGAAAAGAAAGAAAAAGAGAAAGGGACGAAGAAGAAGCAGGTGGCTGTGAGGTTCTTGAAGAGAATGAAGCAGAATTCTCCAAGCGAAGCCACGGACGAAGATGGCGATGGCTCAGAGGATGAGAGTTTAAAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAGAAGAAGAGGAAGATGAAGAAACAGAATGAAGGGAAAAGAGAAAGGGTAAGGCGGAGTGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGGGGAGAGGGAAGAGAGGGGTGGGGAGGCCGCCGAAGAAAGCCGAAACAGTGAGCGTAAAAAGGCAACAGAGGGAGGAGGTGGTAGGAGGGAGTAAACCCCGAAAGCGTTCAAGGAGATAA Coding sequence (CDS) ATGGTTGTGCAACGCGAAACCAACACCAAACCATGGGGAACGCTGGAGGAGCTCTTGCTCGCCTCCGCTGTTAACCGTCATGGCACCACAAGTTGGGACTCCGTCGCCATGGAAATACACAATCGATGCTCTCAATCCTCTTCTTCTCTAACTCCCCAAGATTGTAGGATCAAGTTCCACGACCTCAAGCGCCGATTCCTCTCCCAAAATGACCTCGATTCTGATTCCACCTCCCTCATGCCTATTCTCGAAGAGTTGAGGAAGATTCGGGTGGAGGAGCTCCGCCGCGATGTTCAACGTCGGGATGTCTTGATCGTGTCATTGGAAATGAAGGTGAAGCGGTTGGAGGAGGAGAGGGACCGGAGTTTCAACGAACCCGATGGGGGACCGGATCTGGACGTGAACGCCGTCGACACCAACCTCTGCCCGCTTAATCCCACGCCCTCCGGCGACGACTCCGACGATCGCGAGAACCGATCCCTGGACGAATCCAATTCCACGAGTAAAAAAAAAGAGGAGGGCGTTGGACAGAACGGCGTGGTTCGGGAGAGGCCGATATCCGAAACAGTCAAAATCACAAAAAAGAAGGAAACCGGGGCGGCACGAACCGGGGATGAACCGGAGGCAGAAAGAGAAAAGGAGTCTGCAGCGGGAGGAGGATATAAACGAAGGGAGAAAAAAGAAAGAAATTGGGGAAATTCGAAGGGGAAGGCGTCTGCGGTGGGCGATTCGAACGAAGCGTGGGAATCGGTGAGCGAGTCGAAGCAAGAAGGGACAGAGGGGGCGGTGGCGAAGCAGCAGAGCAGCGACGTACAAAGCTCAGCCGGTTTGTCCCAGAGGAAACGGTGTCGTAGCAGAGGAGGAAATGGAACTAGCAGCGGCGAAGAGCCCGAGGTATCTCCCGCCAAGCCCAAGCCCAAGCCCAACCCCAAGTCCAAGCCCAACCCCAAGCCCAACTCCAACCCTGCAGCCGTCAAATCTGAGCCGTTGCTCAAATTCCTGGAGATCATTCGCTCCCATCGGCTTGGCTCTGCCTTCGAGCGCCGTCTACGGAGCCAGGAATCGGATAGATACAAAAAATTGATTCGGCAACACATCGATCTGAGAACGATTCATTCGAGAGTGGTGAAAGGTGCCTATGCGGATTCAATTCACCGGTTCTTCCGAGATCTCCTCCTCCTCTTCAACAATGCCGTCATCTTTTTCCACAGATCTTCCCCCGAAAATGGTGCCGCAGTGAAGCTTCGAGCTCTCGTGTTGAAAGAAATGAAAGACAGAATACGAAAGCCCCAACCCCCCATAGTCGCAAAATCAAAACCCAAGCAAGAAGCGGATGTGTCATCGTCCAAGCCCAGAAAGCCATCTGCTACCATGGTGGTGTGTCGCAAACGAGATTCTGTTTCTCAGACATCGGATGTGGGAGGCAAAAAATCGGAGAATAATTCAAGAGAGGGTGAAGGGAAGAGGAAGGGCAATGATTGTTCGGAGATAAAAATTTACGAGAAGGGTACATGGAAGAAGGGTTTGAATTTGAAAGAGAGGGGAAGACCGGGAGTGGGTAATTCGGGAGCGAGAAGCTGTAGAACAACGACGAACAAAAAGAACGGGGAAGTGAAGCACGAATACGGGGGGAACGAATTGAGCTCTCACGATGGGATGGGAGTTCGAATGGAAAAGAAAGAAAAAGAGAAAGGGACGAAGAAGAAGCAGGTGGCTGTGAGGTTCTTGAAGAGAATGAAGCAGAATTCTCCAAGCGAAGCCACGGACGAAGATGGCGATGGCTCAGAGGATGAGAGTTTAAAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAGGAGAAGAAGAGGAAGATGAAGAAACAGAATGAAGGGAAAAGAGAAAGGGTAAGGCGGAGTGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGGGGAGAGGGAAGAGAGGGGTGGGGAGGCCGCCGAAGAAAGCCGAAACAGTGAGCGTAAAAAGGCAACAGAGGGAGGAGGTGGTAGGAGGGAGTAAACCCCGAAAGCGTTCAAGGAGATAA Protein sequence MVVQRETNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRFLSQNDLDSDSTSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDRSFNEPDGGPDLDVNAVDTNLCPLNPTPSGDDSDDRENRSLDESNSTSKKKEEGVGQNGVVRERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKASAVGDSNEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEEPEVSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRYKKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRALVLKEMKDRIRKPQPPIVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSDVGGKKSENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTNKKNGEVKHEYGGNELSSHDGMGVRMEKKEKEKGTKKKQVAVRFLKRMKQNSPSEATDEDGDGSEDESLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGKRERVRRSGGGGGGGGGGGRGGGRGKRGVGRPPKKAETVSVKRQQREEVVGGSKPRKRSRR
Homology
BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT2G44430.1 (DNA-binding bromodomain-containing protein ) HSP 1 Score: 150.6 bits (379), Expect = 4.7e-36 Identity = 210/680 (30.88%), Postives = 312/680 (45.88%), Query Frame = 0 Query: 5 RETNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKR 64 +++ T+ WGT EELLLA AV RHG WDSVA E+ +R S S + DCR K+ DLKR Sbjct: 43 KKSQTQAWGTWEELLLACAVKRHGFGDWDSVATEVRSRSSLSHLLASANDCRHKYRDLKR 102
Query: 65 RFLSQNDLDSDST------------SLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKV 124 RF Q D +T + +P LE+LR +RV ELRR+V+R D I+SL++KV Sbjct: 103 RFHEQEKTDVTATVEEEEEEEERVGNNIPWLEQLRNLRVAELRREVERYDCSILSLQLKV 162
Query: 125 KRLEEERDRSFNEPDGGPDLDVNAVDTNLCP---LNPTPSGDDSDDRENRSLDESNSTSK 184 K+LEEER+ +PD + + + S + DRENRS++ESNST+ Sbjct: 163 KKLEEEREVGEEKPDLENERKEERSENDGSESEHREKAVSAAEESDRENRSMNESNSTAT 222
Query: 185 KKEEGVGQNGVVRERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKER 244 EE E V GDEP RE +S Sbjct: 223 AGEE--------------ERV------------CGDEPSQTREDDS-------------- 282
Query: 245 NWGNSKGKASAVGDSNEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGN 304 GN K + ++ + ++EG+ ++ SD +G S+ K R R Sbjct: 283 --GNDKNPDPDPVNK----DATAAEEEEGSVSRGSEASHSDELGESGTSESKWKRKRRKQ 342
Query: 305 GTSSGEEPEVSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERR 364 G +GE A KS+PL+ L++IRSH GS FERR Sbjct: 343 G-GAGE------------------------IRSAESKSQPLISLLDLIRSHPRGSLFERR 402
Query: 365 LRSQESDRYKKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPEN 424 LRSQE+ YK +++QH+D+ TI ++ +G+Y S F+RDL LLF NA++FF SS E+ Sbjct: 403 LRSQEAKDYKSMVKQHLDIETIQRKLKQGSYDSSSLIFYRDLQLLFTNAIVFFPLSSSES 462
Query: 425 GAAVKLRALVLKEMKDRIRKPQPPIVAK-------SKPKQEADVSSSKPRKPSATMVVCR 484 AA +LRA+V +EM+ K P ++ + K E SS +K S +VVC+ Sbjct: 463 MAAHELRAVVSQEMRKETGKAGPRLIKQEASGMRSGKADAETSDSSLSRQKSSGPLVVCK 522
Query: 485 KRDSVS---QTSDVGGKKSENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGV 544 KR SVS S + ++ E + K N + ++ + K + + G Sbjct: 523 KRRSVSAKASPSSSSFSQKDDTKEETLSEEKDNIATGVRSSRRAN-KVAAVVANNTKTGK 582
Query: 545 GNSGARSCRTTTNKKNGEVKHEYGGNELSSHDGMGVRMEKKEKEKGTKKKQVAVRFLKRM 604 G + + + TN N + G +K+ KKK VA FLKR+ Sbjct: 583 GRNKQKQTESKTNSSNDNSSKQDTGK------------TEKKTVSADKKKSVA-DFLKRL 634
Query: 605 KQNSP-SEATDEDGDGSEDESLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGK 659 K+NSP EA D++ G ++K++ + + E +++ E E ++ + + K Sbjct: 643 KKNSPQKEAKDQNKSGG---NVKKDSKTKPRELRSSSVGKKKAEVENTPVKRAPGRPQKK 634
BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT3G60110.1 (DNA-binding bromodomain-containing protein ) HSP 1 Score: 145.2 bits (365), Expect = 2.0e-34 Identity = 209/700 (29.86%), Postives = 333/700 (47.57%), Query Frame = 0 Query: 12 WGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRFLSQND 71 WGT EEL+L AV RH + WDSVA E+ R S+SS ++ +CR+K+ DLKRRF D Sbjct: 52 WGTWEELVLTCAVKRHAFSDWDSVAKEVQAR-SRSSLIVSAVNCRLKYQDLKRRFQDSVD 111
Query: 72 LDSDSTSL----------MPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDR 131 + ++T + LE+LR + + ELRR+VQR D I+SL++KVK+LEEE+D Sbjct: 112 VGDENTEAAANEEDEVGEISWLEQLRSLHMAELRREVQRCDDSILSLQLKVKKLEEEKDG 171
Query: 132 SFNEPDGGPDLDVNAVDTNLCPLNPTPSGDDSDDRENRSLDESNSTSKKKEEGVGQNGVV 191 ++ D PDL + P+ +SD +NRS++ESNST+ + + Sbjct: 172 --DDGDNKPDLK----NDETKPVRVNRETTESDRDDNRSMNESNSTASVDK--------I 231
Query: 192 RERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKASAV 251 + + K+ K E +P+ + E+ E++ER + K S + Sbjct: 232 ADHDRLDGDKMVKANENS---RNPDPDPVNKAETP--------EEEER----TVSKRSEM 291
Query: 252 GDSNEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEEPEVSP 311 +S E ES GT + K++ +S G GG S+G+ Sbjct: 292 SNSGELDES-------GTSNCLGKRKGQKYRSGGG----------GGGVKSAGD------ 351
Query: 312 AKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRYKKL 371 KS+PL+ +++IRSH GS FE RLRSQ++ YK+L Sbjct: 352 ------------------------KSQPLIDIIKLIRSHPRGSVFESRLRSQDTKDYKRL 411
Query: 372 IRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRALVLK 431 IRQH+D++TI ++ KG+Y S F+RDL LLF NA++FF SS E+ AA +LR LV Sbjct: 412 IRQHLDMKTIEKKMEKGSYVSSSLSFYRDLKLLFTNAIVFFPTSSSESIAAQELRTLVSN 471
Query: 432 EMKDRIRKPQPPIVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSDVGGKKSENN 491 EMK R K ++ K EA+ S S+ + ++V C+K+ S + K S ++ Sbjct: 472 EMKKRTGKLGHCVI-----KSEAESSVSRQKSSVLSLVPCKKKSSALK------KTSPSS 531
Query: 492 SREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTNKKNGEVKHE 551 S + ++K + SE KI + + + + T T + +K + Sbjct: 532 SSRQKDEKKSQEVSEEKIVTTTATTSARSSRRTSK----EIAVVAKDTKTGRAKNNIKKQ 591
Query: 552 YGGNELSSHDGMGVRMEKKEKEKGT---KKKQVAVRFLKRMKQNSPSEATDEDGDGSEDE 611 SS D + E + EK T KKK VA FLKR+K+NSP + + S+++ Sbjct: 592 TDTKTESSDDDDDEKEENSKTEKKTVADKKKSVA-DFLKRIKKNSPQKGKETT---SKNQ 641
Query: 612 SLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGKRERVRRSGGGGGGGGGGGRG 671 + ++E + +++ + ++E + K R+++ K+ V + Sbjct: 652 KKNDGNVKKENDHQKKSDGNVKKENSKVKPRELRSSTGKKKVEVENNNSKSS-------- 641
Query: 672 GGRGKRGVGRPPKKAETVSVKRQQREEVVGGSKPRKRSRR 699 KR + K+ V+ ++ RE +PRKRSRR Sbjct: 712 ---SKR---KQTKETAEVATGKRGRESGKDDKQPRKRSRR 641
BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT3G57980.1 (DNA-binding bromodomain-containing protein ) HSP 1 Score: 140.2 bits (352), Expect = 6.3e-33 Identity = 232/710 (32.68%), Postives = 335/710 (47.18%), Query Frame = 0 Query: 15 LEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRF----LSQN 74 +EELLLA AV+RHGT SWDSVA E+H + + + +LT DCR K++DLKRRF +S Sbjct: 1 MEELLLACAVHRHGTDSWDSVASEVHKQ-NSTFRTLTAIDCRHKYNDLKRRFSRNLVSPG 60
Query: 75 DLDSDS----TSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDRSFNEP 134 D ++ S +P LEELRK+RV+ELRR+V+R D+ I SL++KVK LE+ER++S Sbjct: 61 SADEETLAAEISSVPWLEELRKLRVDELRREVERYDLSISSLQLKVKTLEDEREKSLKTE 120
Query: 135 DGGPDLDVNAVDTNLCPLNPTPSGDDS--DDRENRSLDESNSTSKKKEEGVGQNGVVRER 194 + DLD A N T SG++S E ++ + N S G G R Sbjct: 121 NS--DLDRIAETKE----NHTESGNNSGVPVTELKNSPDPNDNS----PGTGSENTNR-- 180
Query: 195 PISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKASAVGDS 254 VKI + + R G E E+ +G G KE + K + + DS Sbjct: 181 ----AVKIAEPVDEEPNRIGGEDNDEKPAREDSGRGSCESVAKESDRAEPKREGN---DS 240
Query: 255 NEAWESVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEEPEVSPAKP 314 E ES+ ESK G +++SD QSSA P Sbjct: 241 PELVESMDESK-----GEEDTKETSDGQSSASF--------------------------P 300
Query: 315 KPKPNPKSKPNPKPNS---NPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRYKKL 374 + + + +P+ K S N V+S+PL F+EI++SH +GS F RRL +QE+ Y ++ Sbjct: 301 RKETVDQDQPDNKDQSLTVNKIFVESQPLSDFIEILQSHPIGSHFSRRLETQETSDYYRI 360
Query: 375 IRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRALVLK 434 IRQHID I SRV +G Y + +FFRDLLLL NN +F+ SPE AA +L L+ K Sbjct: 361 IRQHIDFEMIRSRVEEGYYKTARTKFFRDLLLLINNVRVFYGEPSPEFNAAKQLYQLIKK 420
Query: 435 EMKDRIRK---PQPPIVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSDVGGKKS 494 +M +I K P P A K+E VSS KP S ++ CRKR S++ S ++ Sbjct: 421 QMSFKIPKQTLPPPKEDALVTSKEEVKVSSLKPTL-SVPIIACRKRSSLAVRSPASVTET 480
Query: 495 ENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTNKKNG-- 554 K+K + + ++G + +P V AR +T KK G Sbjct: 481 L--------KKKTRVVPTVDEKQVSEEEEGRPSDKDEKPIVSKKMARGAAPSTAKKVGSR 540
Query: 555 EVKHEYG---GNELSSHDGMGVRMEKKEKEKGT-----KKKQVAVRFLKRMKQNSPSEAT 614 VK N S +G V + +++KG KKQ A FLKRMK S SE Sbjct: 541 NVKTSLNAGISNRGRSPNGSSVLKKSVQQKKGINTSGGSKKQSAASFLKRMKGVSSSETV 600
Query: 615 DEDGDGSEDESLKEEEEEEEEEEEEEEEEEEEEEEEEEKKRKMKKQNEGKRERVRRSGGG 674 E++K E + E+ + + E+ + K +K+ GKR + + Sbjct: 601 --------VETVKAESSNGKRGAEQRKSNSKSEKVDAVKLPAGQKRLTGKRPTIEK---- 632
Query: 675 GGGGGGGGRGGGRGKRGVGRPPKKAETVSVKRQQREEVVGGSKPRKRSRR 699 G G KRG K ++ +E ++P+KRS+R Sbjct: 661 --GSPTKKNSGVASKRGTASLMAKRDS----ETSEKETGSSTRPKKRSKR 632
BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT2G42150.1 (DNA-binding bromodomain-containing protein ) HSP 1 Score: 123.6 bits (309), Expect = 6.1e-28 Identity = 223/734 (30.38%), Postives = 329/734 (44.82%), Query Frame = 0 Query: 7 TNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFHDLKRRF 66 T + W T EELLLA AV+RHGT SW+SV+ EI + S + SLT CR K+ DLK RF Sbjct: 11 TEKQTWSTWEELLLACAVHRHGTESWNSVSAEI-QKLSPNLCSLTASACRHKYFDLKSRF 70
Query: 67 LSQNDLDSD--STSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERDRSFN 126 + + S P LEELRK+RV+ELRR+V++ D+ I +L+ KVK+LEEER+ SF Sbjct: 71 TQELPVPESVAEISTAPWLEELRKLRVDELRREVEQYDLSISTLQSKVKQLEEEREMSFI 130
Query: 127 EPDGGPDLDVNAVDTNLCPLNPTPSGDDSDDRENRSLDESNSTSKKKEEGVGQNGVVRER 186 +PD + EN L+ +K+E V Sbjct: 131 KPD--------------------------TETENLDLE-------RKKERSDSGEPVPNP 190
Query: 187 PI---SETVKITKKKETGAARTGDEPEAEREKESA-AGGGYKRREKKERNWGNSKGKASA 246 P+ +ET+ KE G+ T ERE+E A +GGG + ++ G+ + Sbjct: 191 PVQLMNETIS-PDPKEIGSENT------EREEEMAGSGGGESKLAGEDSCRGSCESVEKE 250
Query: 247 VGDSNEAWESVSESKQ-EGTEGAVAKQQ-SSDVQSSAGLSQRKRCRSRGGNGTSSGEEPE 306 ++E E VS ++ E +GA ++ +SDVQSSA L ++ GTS ++ + Sbjct: 251 PTTNSERVEPVSVTELIESEDGASRGEEITSDVQSSASLPRK---------GTSEPDKED 310
Query: 307 VSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESDRY 366 SP K V+S+PL+ F+EI+ SH GS F RRL QE+ Y Sbjct: 311 QSPTSAK----------------DFTVESQPLISFVEILLSHPCGSHFSRRLERQETIEY 370
Query: 367 KKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLRAL 426 +IR+H+D I RV G Y FFRDLLLL NNA +F+HR S E A +L L Sbjct: 371 GTIIREHVDFEIIRKRVEGGLYKSWRINFFRDLLLLVNNARVFYHRGSSEFKFAEQLHQL 430
Query: 427 VLKEMKDRIR-KPQPPIVAKSKPKQE------ADVSSSKPRKPSATMVVCRKRDSVSQT- 486 V K+M ++ ++ S PK+E + SSKPR +V CRKR +++ Sbjct: 431 VKKQMTTTLKGLSNRDEISISPPKEEVVAIPSSKPVSSKPRMSVPNIVACRKRSALAAKP 490
Query: 487 -------SDVGGKKSEN---------NSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKER 546 D KK+++ + ++GE K +D S I + + R Sbjct: 491 LLLLPPGPDKKAKKTDHVVDYDEKPVSDKDGEASGKDDDDSLI-----------VKIMTR 550
Query: 547 GRPGVGNSGARSCRTTTNKKNGEVKHEYGGNELSSHDGMGVRMEKKEKEKGTKKKQVAVR 606 GR ++G + R N+ + L+ D + E++KG KK+ A Sbjct: 551 GR--TSSTGKVANRNDKNR----------DSSLNVDDSKDKVKKTDEEKKGGSKKKRAAS 610
Query: 607 FLKRMKQNSPSEATDEDGDGSEDESLKEEEEEEEEEEEE---EEEEEEEEEEEEEKKRKM 666 FL+RMK GS D++LK + + E+ + + + KK + Sbjct: 611 FLRRMKV------------GSSDDTLKRSSAADSSTTGKGGGAEQRKNNSNKADNKKTPI 631
Query: 667 KK--QNEGKRERVRRSGGGGGGGGGGGRGGGRGKRGVGRPPKKAETVSVKRQQ---REEV 699 K Q K V+RS GR P + + KR + +E Sbjct: 671 PKIRQTNKKASPVKRS------------NNGRNSEREAAPSSSSYPILAKRSRDAGEKEE 631
BLAST of CmaCh02G012280 vs. TAIR 10
Match: AT1G61215.1 (bromodomain 4 ) HSP 1 Score: 91.3 bits (225), Expect = 3.4e-18 Identity = 149/543 (27.44%), Postives = 223/543 (41.07%), Query Frame = 0 Query: 1 MVVQRETNTKPWGTLEELLLASAVNRHGTTSWDSVAMEIHNRCSQSSSSLTPQDCRIKFH 60 MV+ T WGT EELLL AV RHGT W VA E+ R TP+ C+ K+ Sbjct: 3 MVMMTTTMESDWGTWEELLLGGAVLRHGTGDWTVVADEL--RSHSLPEIFTPEICKAKYK 62
Query: 61 DLKRRFLSQNDLDSDSTSLMPILEELRKIRVEELRRDVQRRDVLIVSLEMKVKRLEEERD 120 DL++R++ EEL+K RV EL+ + + + I SLE K++ L+ E + Sbjct: 63 DLRKRYV----------GCKAWFEELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESN 122
Query: 121 RSFNEPDGGPDLDVNAVDTNLCPLNPTPSGDDSDD--RENRSLDESNSTSKKKEEGVGQN 180 ++ N + L P+P + + ++ S D S+ S ++E N Sbjct: 123 DECHQN--------NYDSSRTLSLEPSPKSEGGGECTSKDTSKDLSSVGSFTQQELTTTN 182
Query: 181 GVVRERPISETVKITKKKETGAARTGDEPEAEREKESAAGGGYKRREKKERNWGNSKGKA 240 + SE + ++++T D ES GGG + + G K K Sbjct: 183 WSPEAK--SEAPVVIEQEKTKDLLHND------IFESVYGGGGQVLPSMRKKRGKRKRKD 242
Query: 241 SAVGDSNEAWE--SVSESKQEGTEGAVAKQQSSDVQSSAGLSQRKRCRSRGGNGTSSGEE 300 +V E E +V ES T S+D+ S RS+ TSS + Sbjct: 243 CSVSVGKEVMEVSAVEESDLFDT--------SADIASI--------YRSKEAASTSSSQS 302
Query: 301 PEVSPAKPKPKPNPKSKPNPKPNSNPAAVKSEPLLKFLEIIRSHRLGSAFERRLRSQESD 360 S A PK L+K I + F RRL SQ+ Sbjct: 303 RGHSLALPK-----------------------ELMKIYNTIAQNECALVFRRRLDSQKRG 362
Query: 361 RYKKLIRQHIDLRTIHSRVVKGAYADSIHRFFRDLLLLFNNAVIFFHRSSPENGAAVKLR 420 RYKKL+R+H+DL T+ SR + G S FRD LL+ NNA IF+ +++ E +AV LR Sbjct: 363 RYKKLVRRHMDLDTVQSR-INGCSISSAKELFRDFLLVANNAAIFYSKNTREYKSAVGLR 422
Query: 421 ALVLKEMKDRIRKPQPP----IVAKSKPKQEADVSSSKPRKPSATMVVCRKRDSVSQTSD 480 +V K ++ + + PP I A S S+ P ++ + R Sbjct: 423 DIVTKSLRHYLTEDHPPHRSSITAGSTKVVVLHQKSTSP-SVRTSLAAKKPRTGAHPLKT 472
Query: 481 VGGKKSENNSREGEGKRKGNDCSEIKIYEKGTWKKGLNLKERGRPGVGNSGARSCRTTTN 536 V ++ +SR KR D + KKG +++ GR N G S Sbjct: 483 VVQDMAKTSSR--GNKRSVTDLPVSAVKSSAAGKKGTAVRKDGRQ--ANRGLESPALMGR 472
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 594..641 |
None | No IPR available | COILS | Coil | Coil | coord: 105..125 |
None | No IPR available | GENE3D | 1.10.10.60 | | coord: 3..73 e-value: 7.3E-6 score: 27.4 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 532..570 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 187..233 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 303..317 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 462..476 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 510..698 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 429..491 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 625..645 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 477..491 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 116..325 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 237..296 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 150..178 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 589..624 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 667..691 |
None | No IPR available | PANTHER | PTHR37888 | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN | coord: 1..698 |
None | No IPR available | PANTHER | PTHR37888:SF8 | BINDING PROTEIN, PUTATIVE-RELATED | coord: 1..698 |
None | No IPR available | CDD | cd04369 | Bromodomain | coord: 330..423 e-value: 6.39845E-15 score: 68.9382 |
IPR001487 | Bromodomain | SMART | SM00297 | bromo_6 | coord: 97..428 e-value: 5.0E-14 score: 62.6 |
IPR001487 | Bromodomain | PFAM | PF00439 | Bromodomain | coord: 333..408 e-value: 5.4E-9 score: 36.0 |
IPR001487 | Bromodomain | PROSITE | PS50014 | BROMODOMAIN_2 | coord: 338..409 score: 10.967 |
IPR001005 | SANT/Myb domain | SMART | SM00717 | sant | coord: 8..65 e-value: 2.2E-5 score: 33.9 |
IPR001005 | SANT/Myb domain | PROSITE | PS50090 | MYB_LIKE | coord: 4..63 score: 6.539188 |
IPR001005 | SANT/Myb domain | CDD | cd00167 | SANT | coord: 11..63 e-value: 1.10914E-4 score: 38.3254 |
IPR036427 | Bromodomain-like superfamily | GENE3D | 1.20.920.10 | | coord: 326..438 e-value: 5.1E-14 score: 53.8 |
IPR036427 | Bromodomain-like superfamily | SUPERFAMILY | 47370 | Bromodomain | coord: 303..431 |
IPR017930 | Myb domain | PFAM | PF00249 | Myb_DNA-binding | coord: 9..62 e-value: 2.9E-7 score: 30.6 |
IPR009057 | Homeobox-like domain superfamily | SUPERFAMILY | 46689 | Homeodomain-like | coord: 6..70 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006413 |
translational initiation |
molecular_function |
GO:0005515 |
protein binding |
molecular_function |
GO:0003743 |
translation initiation factor activity |
|