CmaCh02G012050 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G012050
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionF-box/kelch-repeat protein
LocationCma_Chr02: 7137182 .. 7140141 (+)
RNA-Seq ExpressionCmaCh02G012050
SyntenyCmaCh02G012050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAGGAAGAAAAAATCAGTATTTGGGTGTAGCACAGCGTCCCATCTGTAGCATGTAATTGTTTCCTTTTAGTTTAGCTACCAGAGAAGAAGGGAGGAGAGTGGACTGGTTCTCTCTGCGTTTTTGTGTGCGCGTAGGAGAGAGAGAGAGAAAGAGAATCCGGGTTCCCTTTTTCTCACGCTTTGTAGTCCTTCTAAGCGGTTATTGGGGTTAATTCCTTCTGTTAGATCAGATTTTTCAAGGGTTCAAGTTTTTAGCTCAAAGGGTTCGTGATCCGACTCTACTTGGCCTCTTTTAACCTCGCTTTGGATGCTGGGTGCGCCTACAAATTGAATATATGGTTCTTTGCTTTCGAAATGAACGCATCGGTTGAACAATCTTCAAGTGCTCAAAGGGGATTTCGAATTCAAGCTCCACTGGTTAGTTGAATCGAAATTTATACTTAATTTACTGCCAATTAAGTGATCTGTGGAACTGCTTCTGGGTAATTTCGATTACGAGCGCTTTTCTTCGCCGCAACTCCTCGCATTTCTTCTATACTGGTTTTACTTCGTGAATTTCTAGTAAAATCGTAGTGGGTTTTAGCTAATGCACTGTAATTTGAGAAAGAATTTGAAGTTTGATTCGTATGCGATGATTCTCGTATCTTACTTCGATTATTGGGGTTTTCTGCGGTGGATTTTTTTAGGTTCCCGGGATTGTGCCCAATTCGTGGCTTATTTCATCAGCATTCTGTTGAATATTCTAATTATCCTTCTGAGATTTGCTTTTTTGCGTTCTGAATGCTGGATTTTGTTGTCAATATTCTTTCAGAATTGATTCCAAGTATGTTCACAACGATGCTTAGTTTTAAAGTAAACTCTAGTTAAGTTTTTCATCGGATTTTGGGTTTGTTTTGGAACAAATTGTTCTGGTTTTATTCTATTACTTCTTTTGAAGCTGCATCTTGGAGGAACTTATGAGGGTTATGAAATATGAACAAAATGTCGCCGCAGATTCGAGTTGCACAGAGTGTTAGATCCATGTCGATTTTTAAAGATTCACTGATAGGCGAATTGATTCGACTAAGAATATGCCGGATTAGTGTGAGATCCCACATTGGTTGGAGAGGGGAGTGACGGCTTCTTTATAGAAGGGTGTGAAAACCTCTCCCTAGTAGACGCGTTTTAAAAACCTTAAGGGGAAACCCGAAAGGGAAAACCCAAAGAGGACAATATCTGCTAGCTGTGAGCTTGGGTTGTTACAATAAGCTTCCTAAGATAAATTTAATATATCCTCTAGTAGGTGTATATTGAGTGAGACTTTTCGTTGTTTCCCGTTGATTTTTACGAGTATGCGCATCTTGGAGGAAGTGATGTGATGTGCTCAAACCTTTTAACATATTACAGTTTGTTATGGTCTTCCTCACGGCGTGGTTGGTTCCGAATTCCCTTTATGCAGCCAGGCCACCATAGGAGCTGTGCCCTTTAGTCCTATTGAACTAAAGATAGAAGTTGCGGTGTAATTCTCGGATGTCGTACTGTCCTTAGACACATAATACCAACTATCCAAATATAGGGGCAAAACTTAGGACTTCGAACTGAATGTCATAGACGATCCACTGGTTTTCGTATGGGTTATCTTTGTCTTTGTTTTTCCTTTTTGGTTAGTTGATATGCAAATTTTTGCATCTAACTGGAAATATGTTGTAGGTTGATTCTGTGTCATGCTATTGCAAAGTAGACTCAGGCTTGAAGACAGTTGTTGGAGCTAGAAAATTCGTCCCTGGCTCAAAAATATGTATCCAGCCTGATATTAATCCAAATGCGCATAGAAGTAAAACTTCACGGAGAGAAAGGACCCGAGTCCAGCCTCCGCTTCTACCAGGCCTTCCAGATGATCTTGCCATTGCTTGTCTGATTCGAGTCCCTCGAGTGGAACATAGGAAACTCCGCCTTGTTTGCAAGAGATGGTATCGACTTCTGATGGGAAACTTTTATTATTCTCTAAGGAAAAGTCTTGGCATGGCAGATGAGTGGGTCTATGTTATCAAAAGAGACCGTGATCGAAGGATCTCGTGGCATGCTTTTGATCCGACCTACCAGCTTTGGCAATCACTTCCACCCCTTCCCGTCGAATACTCTGAGGCTCTTGGTTTTGGCTGTGCTGTTCTTAGCGGTTGCCACCTATACTTATTTGGAGGGAAAGATCCAATAAGGGGATCGATGAGGCGCGTGATTTTCTACAGTGCCCGTACAAACAAATGGCATAGAGCACCTGATATGCTTCGAAAACGTCATTGTTTCGGTTCTTGTGTTATAAACAACTGCCTTTATGTTGCTGGCGGTGAATGTGAGGGGATCCAGAGAACTCTTCGTTCTGCTGAAGTTTATGATCCCAACAAGAACAAATGGAGCTTTATTTCAGATATGAGCTCAGCTATGGTGCCATTAATTGGTGTAGTTCATGACGGGTTGTGGTTCCTTAAAGGACTCGGAGCTCGCAGAGAGGTCATGAGCGAAGCCTATTCTCCTGAAACTAATACTTGGACGTCGGTTAGTGACGGTATGATCGCTGGCTGGCGAAACCCAAGTATTTCTTTGAATGGACAACTTTATGCCTTGGATTGCAGTGATGGATGCAAGCTAAGGGTTTATGATAGTGCAACAGACTCATGGAACAAATTCATGGATAGCAAGCTCCATCTTGGAAGTTCTCATGCTCTGGAGGCTGCTGCGCTCGTTTCGCTTAATGGGAAGCTTTGCATTATACGCAACAACATGAGTATCAGCCTTGTCGACGTTTCGAGTCTGGATAAAAGTGTCGAGAGCAATCCTCACCTATGGGAAAATATTGCTGGGAAAGGTCCCCTGAGGACGTTAGTTACAAATTTATTGTCGAGCATAGCTGGGCGAAGCGGGTTGAAGAGTCATATTGTGCATTGTCAAGTGCTCCAGGCATGA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAGGAAGAAAAAATCAGTATTTGGGTGTAGCACAGCGTCCCATCTGTAGCATGTAATTGTTTCCTTTTAGTTTAGCTACCAGAGAAGAAGGGAGGAGAGTGGACTGGTTCTCTCTGCGTTTTTGTGTGCGCGTAGGAGAGAGAGAGAGAAAGAGAATCCGGGTTCCCTTTTTCTCACGCTTTGTAGTCCTTCTAAGCGGTTATTGGGGTTAATTCCTTCTGTTAGATCAGATTTTTCAAGGGTTCAAGTTTTTAGCTCAAAGGGTTCGTGATCCGACTCTACTTGGCCTCTTTTAACCTCGCTTTGGATGCTGGGTGCGCCTACAAATTGAATATATGGTTCTTTGCTTTCGAAATGAACGCATCGGTTGAACAATCTTCAAGTGCTCAAAGGGGATTTCGAATTCAAGCTCCACTGGTTGATTCTGTGTCATGCTATTGCAAAGTAGACTCAGGCTTGAAGACAGTTGTTGGAGCTAGAAAATTCGTCCCTGGCTCAAAAATATGTATCCAGCCTGATATTAATCCAAATGCGCATAGAAGTAAAACTTCACGGAGAGAAAGGACCCGAGTCCAGCCTCCGCTTCTACCAGGCCTTCCAGATGATCTTGCCATTGCTTGTCTGATTCGAGTCCCTCGAGTGGAACATAGGAAACTCCGCCTTGTTTGCAAGAGATGGTATCGACTTCTGATGGGAAACTTTTATTATTCTCTAAGGAAAAGTCTTGGCATGGCAGATGAGTGGGTCTATGTTATCAAAAGAGACCGTGATCGAAGGATCTCGTGGCATGCTTTTGATCCGACCTACCAGCTTTGGCAATCACTTCCACCCCTTCCCGTCGAATACTCTGAGGCTCTTGGTTTTGGCTGTGCTGTTCTTAGCGGTTGCCACCTATACTTATTTGGAGGGAAAGATCCAATAAGGGGATCGATGAGGCGCGTGATTTTCTACAGTGCCCGTACAAACAAATGGCATAGAGCACCTGATATGCTTCGAAAACGTCATTGTTTCGGTTCTTGTGTTATAAACAACTGCCTTTATGTTGCTGGCGGTGAATGTGAGGGGATCCAGAGAACTCTTCGTTCTGCTGAAGTTTATGATCCCAACAAGAACAAATGGAGCTTTATTTCAGATATGAGCTCAGCTATGGTGCCATTAATTGGTGTAGTTCATGACGGGTTGTGGTTCCTTAAAGGACTCGGAGCTCGCAGAGAGGTCATGAGCGAAGCCTATTCTCCTGAAACTAATACTTGGACGTCGGTTAGTGACGGTATGATCGCTGGCTGGCGAAACCCAAGTATTTCTTTGAATGGACAACTTTATGCCTTGGATTGCAGTGATGGATGCAAGCTAAGGGTTTATGATAGTGCAACAGACTCATGGAACAAATTCATGGATAGCAAGCTCCATCTTGGAAGTTCTCATGCTCTGGAGGCTGCTGCGCTCGTTTCGCTTAATGGGAAGCTTTGCATTATACGCAACAACATGAGTATCAGCCTTGTCGACGTTTCGAGTCTGGATAAAAGTGTCGAGAGCAATCCTCACCTATGGGAAAATATTGCTGGGAAAGGTCCCCTGAGGACGTTAGTTACAAATTTATTGTCGAGCATAGCTGGGCGAAGCGGGTTGAAGAGTCATATTGTGCATTGTCAAGTGCTCCAGGCATGA

Coding sequence (CDS)

ATGAACGCATCGGTTGAACAATCTTCAAGTGCTCAAAGGGGATTTCGAATTCAAGCTCCACTGGTTGATTCTGTGTCATGCTATTGCAAAGTAGACTCAGGCTTGAAGACAGTTGTTGGAGCTAGAAAATTCGTCCCTGGCTCAAAAATATGTATCCAGCCTGATATTAATCCAAATGCGCATAGAAGTAAAACTTCACGGAGAGAAAGGACCCGAGTCCAGCCTCCGCTTCTACCAGGCCTTCCAGATGATCTTGCCATTGCTTGTCTGATTCGAGTCCCTCGAGTGGAACATAGGAAACTCCGCCTTGTTTGCAAGAGATGGTATCGACTTCTGATGGGAAACTTTTATTATTCTCTAAGGAAAAGTCTTGGCATGGCAGATGAGTGGGTCTATGTTATCAAAAGAGACCGTGATCGAAGGATCTCGTGGCATGCTTTTGATCCGACCTACCAGCTTTGGCAATCACTTCCACCCCTTCCCGTCGAATACTCTGAGGCTCTTGGTTTTGGCTGTGCTGTTCTTAGCGGTTGCCACCTATACTTATTTGGAGGGAAAGATCCAATAAGGGGATCGATGAGGCGCGTGATTTTCTACAGTGCCCGTACAAACAAATGGCATAGAGCACCTGATATGCTTCGAAAACGTCATTGTTTCGGTTCTTGTGTTATAAACAACTGCCTTTATGTTGCTGGCGGTGAATGTGAGGGGATCCAGAGAACTCTTCGTTCTGCTGAAGTTTATGATCCCAACAAGAACAAATGGAGCTTTATTTCAGATATGAGCTCAGCTATGGTGCCATTAATTGGTGTAGTTCATGACGGGTTGTGGTTCCTTAAAGGACTCGGAGCTCGCAGAGAGGTCATGAGCGAAGCCTATTCTCCTGAAACTAATACTTGGACGTCGGTTAGTGACGGTATGATCGCTGGCTGGCGAAACCCAAGTATTTCTTTGAATGGACAACTTTATGCCTTGGATTGCAGTGATGGATGCAAGCTAAGGGTTTATGATAGTGCAACAGACTCATGGAACAAATTCATGGATAGCAAGCTCCATCTTGGAAGTTCTCATGCTCTGGAGGCTGCTGCGCTCGTTTCGCTTAATGGGAAGCTTTGCATTATACGCAACAACATGAGTATCAGCCTTGTCGACGTTTCGAGTCTGGATAAAAGTGTCGAGAGCAATCCTCACCTATGGGAAAATATTGCTGGGAAAGGTCCCCTGAGGACGTTAGTTACAAATTTATTGTCGAGCATAGCTGGGCGAAGCGGGTTGAAGAGTCATATTGTGCATTGTCAAGTGCTCCAGGCATGA

Protein sequence

MNASVEQSSSAQRGFRIQAPLVDSVSCYCKVDSGLKTVVGARKFVPGSKICIQPDINPNAHRSKTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMADEWVYVIKRDRDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREVMSEAYSPETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAAALVSLNGKLCIIRNNMSISLVDVSSLDKSVESNPHLWENIAGKGPLRTLVTNLLSSIAGRSGLKSHIVHCQVLQA
Homology
BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match: Q93W93 (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 734.6 bits (1895), Expect = 6.7e-211
Identity = 345/435 (79.31%), Postives = 387/435 (88.97%), Query Frame = 0

Query: 3   ASVEQSSSAQRGFRIQAPLVDSVSCYCKVDSGLKTVVGARKFVPGSKICIQPDINPNAHR 62
           +S  QS +  RGFR+QAPLVDSVSCYC+VDSGLKTVV ARKFVPGSK+CIQPDINPNAHR
Sbjct: 4   SSQRQSPNGSRGFRLQAPLVDSVSCYCRVDSGLKTVVEARKFVPGSKLCIQPDINPNAHR 63

Query: 63  SKTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRK 122
            K S+RERTR+QPPLLPGLPDDLA+ACLIRVPR EHRKLRLVCKRWYRL  GNF+YS RK
Sbjct: 64  RKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRK 123

Query: 123 SLGMADEWVYVIKRDRDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 182
            LGM++EWVYV KRDRD +ISW+ FDP  QLWQ LPP+P EYSEA+GFGCAVLSGCHLYL
Sbjct: 124 LLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYL 183

Query: 183 FGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTL 242
           FGGKDP+RGSMRRVIFY+ARTNKWHRAPDMLRKRH FG CVINNCLYVAGGECEGIQRTL
Sbjct: 184 FGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTL 243

Query: 243 RSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREVMSEAYSPETNTWTS 302
           RSAEVYDPNKN+WSFI+DMS+AMVPLIGVV+D  WFLKGLG+ + VMSEAY PE N+W+ 
Sbjct: 244 RSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSP 303

Query: 303 VSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAA 362
           VSDGM+AGWRNP  SLNG+LY LDC DGCKLRV+D +TDSWNKFMDSK HLG+S +LEAA
Sbjct: 304 VSDGMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSWNKFMDSKAHLGNSKSLEAA 363

Query: 363 ALVSLNGKLCIIRNNMSISLVDVSSLDKSVESNPHLWENIAGKGPLRTLVTNLLSSIAGR 422
           ALV L+ KLCIIRNNMS+SLVDVS+ DK   +NP LWENIA KG  +++++N+ SSIAGR
Sbjct: 364 ALVPLHNKLCIIRNNMSMSLVDVSNPDK---NNPRLWENIAVKGQSKSILSNIWSSIAGR 423

Query: 423 SGLKSHIVHCQVLQA 438
           + LKSHIVHCQVLQA
Sbjct: 424 A-LKSHIVHCQVLQA 434

BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match: Q9LM55 (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.8e-37
Identity = 127/438 (29.00%), Postives = 190/438 (43.38%), Query Frame = 0

Query: 77  LLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMADEWVYVIKR 136
           L+P LPD+L+I  L R+PR+ +  +RLV +RW   +  +  YSLRK LG  +EW+YV+ +
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 137 DRDRRISWHAFDPTYQLWQSLPPLPV---------------------------------- 196
             + ++ W+A DP    WQ LPP+PV                                  
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 197 -EYSEALGF-GCAV--LSGCHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHC 256
            + SE + F GCA+  + G  LY+ GG    + ++  V  +    N W     ML  R  
Sbjct: 163 RDSSEQMPFCGCAIGAVDG-GLYVIGGLSRSK-TVSCVWRFDPILNSWSEVSSMLASRAY 222

Query: 257 FGSCVINNCLYVAGG--ECEGIQRTLRSAEVYDPNKNKWSFISDM---------SSAMVP 316
             + V+N  LYV GG     G    L+SAEVYDP+ + WS +  M         ++ +  
Sbjct: 223 SKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLAD 282

Query: 317 LIGVVHDGLWFLKG-LGARREVMS---------EAYSPETNTWTSVSDGMIAGW------ 376
           L+  +  G+    G L   + + S         E Y PETN W  +  GM  GW      
Sbjct: 283 LLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAG 342

Query: 377 RNPSISLNGQLYALDCS---DGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAAALVSLN 436
              S+ ++G+LYA D S   +  K++VYD   D+W   +        + +     L   +
Sbjct: 343 TKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIGEVPVYDLTDSESPYLLAGFH 402

BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match: Q9M2C9 (F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana OX=3702 GN=SKIP4 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.8e-30
Identity = 89/347 (25.65%), Postives = 155/347 (44.67%), Query Frame = 0

Query: 69  ERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMAD 128
           +    Q  L+ G+PDD++ +CL RVPR  H  ++ V +RW   +  +     R    +A+
Sbjct: 13  QSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAE 72

Query: 129 EWVYVIKRDRDRRISWHAFDP--TYQLWQSLPPLP-VEYSEALGFGCAVLSGCHLYLFGG 188
            W+Y + RD    +  H  +P  + + W+ +   P +   E +GF  AVL G  L++ GG
Sbjct: 73  SWIYALCRDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGMGF--AVL-GKRLFVLGG 132

Query: 189 KDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTLRSA 248
              +  +   +  Y A  N W      L  + C+ +C   +   +A G         R+ 
Sbjct: 133 CGWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTW 192

Query: 249 EVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLK-GLGARREVMSEAYSPETNTWTSVS 308
           ++YDP        SD++         V DG  +++ G+G      +  YS  +  W  + 
Sbjct: 193 DIYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGGVGGS---STAVYSASSGIWERMD 252

Query: 309 DGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHAL---EA 368
           D M +GWR P++ + G LY LD + G KL ++   T  W       +H+G    L   + 
Sbjct: 253 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMW-------IHIGKLSQLVMKQP 312

Query: 369 AALVSLNGKLCIIRNNMSISLVDVSSLDKS-------VESNPHLWEN 402
             LVS+   + +I  + S  ++DV ++ K+         S P  W++
Sbjct: 313 CRLVSIGNSIFVIGKDCSTVVIDVENVRKNKMNGVMVCSSIPKTWDD 346

BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match: Q9C6Z0 (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.9e-30
Identity = 89/296 (30.07%), Postives = 133/296 (44.93%), Query Frame = 0

Query: 64  KTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMG--NFYYSLR 123
           ++S  E +    PL+PGLPDD+A+ CL+RVP   H   + VCKRW+ LL G    +++ R
Sbjct: 40  RSSELELSLRGEPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWH-LLFGTKETFFAKR 99

Query: 124 KSLGMADEWVYVIKRDR-DRRISWHAFDPTYQLWQSLPPLPVEYSEA-LGFGCAVL--SG 183
           K  G  D W++V+   R   +I W   D     W  +P +P        GF    +   G
Sbjct: 100 KEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREG 159

Query: 184 CHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEG 243
                 G        +  V+ Y    N W     M+  R  F S VI+  +Y AGG    
Sbjct: 160 TMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAAD 219

Query: 244 IQRTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDG--------LW--FLKGLGARRE 303
           +   L  AEV +P    W  +S+M + M      V +G        LW  F+   G    
Sbjct: 220 LYE-LDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRG---- 279

Query: 304 VMSEAYSPETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
              + Y P T+ W ++S G+  GW   S+ +  +L+ +   +  K++VYD  TDSW
Sbjct: 280 ---QVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSW 326

BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match: Q9CAG8 (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-27
Identity = 81/289 (28.03%), Postives = 133/289 (46.02%), Query Frame = 0

Query: 66  SRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLG 125
           SR     +  PL+PGLPDD+A  CL  VPR     +  VCK+W  ++    + ++R+  G
Sbjct: 28  SRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAG 87

Query: 126 MADEWVYVIKRD---RDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 185
           M +EW+YV+  +   +D R  W   D   Q   SLPP+P       GF   V+ G  L +
Sbjct: 88  MLEEWLYVLTMNAGGKDNR--WEVMDCLGQKLSSLPPMP--GPAKTGFKVVVVDG-KLLV 147

Query: 186 FGGKDPIRGSM---RRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQ 245
             G   I GS+     V  Y    N W R  D+   R+ F    +N  +YV GG   G+ 
Sbjct: 148 IAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGG--HGVD 207

Query: 246 -RTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREV----MSEAYS 305
             +L SAEVYDP    W+FI  +            +G  ++ G  +   +    + + Y+
Sbjct: 208 GESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSKLLDVYN 267

Query: 306 PETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
            +  +W    +G+        + +  +L+ +D  +  K+ V+++  ++W
Sbjct: 268 TQCGSWHGSKNGLT--MVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETW 307

BLAST of CmaCh02G012050 vs. TAIR 10
Match: AT1G55270.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 734.6 bits (1895), Expect = 4.7e-212
Identity = 345/435 (79.31%), Postives = 387/435 (88.97%), Query Frame = 0

Query: 3   ASVEQSSSAQRGFRIQAPLVDSVSCYCKVDSGLKTVVGARKFVPGSKICIQPDINPNAHR 62
           +S  QS +  RGFR+QAPLVDSVSCYC+VDSGLKTVV ARKFVPGSK+CIQPDINPNAHR
Sbjct: 4   SSQRQSPNGSRGFRLQAPLVDSVSCYCRVDSGLKTVVEARKFVPGSKLCIQPDINPNAHR 63

Query: 63  SKTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRK 122
            K S+RERTR+QPPLLPGLPDDLA+ACLIRVPR EHRKLRLVCKRWYRL  GNF+YS RK
Sbjct: 64  RKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRK 123

Query: 123 SLGMADEWVYVIKRDRDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 182
            LGM++EWVYV KRDRD +ISW+ FDP  QLWQ LPP+P EYSEA+GFGCAVLSGCHLYL
Sbjct: 124 LLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYL 183

Query: 183 FGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTL 242
           FGGKDP+RGSMRRVIFY+ARTNKWHRAPDMLRKRH FG CVINNCLYVAGGECEGIQRTL
Sbjct: 184 FGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTL 243

Query: 243 RSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREVMSEAYSPETNTWTS 302
           RSAEVYDPNKN+WSFI+DMS+AMVPLIGVV+D  WFLKGLG+ + VMSEAY PE N+W+ 
Sbjct: 244 RSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSP 303

Query: 303 VSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAA 362
           VSDGM+AGWRNP  SLNG+LY LDC DGCKLRV+D +TDSWNKFMDSK HLG+S +LEAA
Sbjct: 304 VSDGMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSWNKFMDSKAHLGNSKSLEAA 363

Query: 363 ALVSLNGKLCIIRNNMSISLVDVSSLDKSVESNPHLWENIAGKGPLRTLVTNLLSSIAGR 422
           ALV L+ KLCIIRNNMS+SLVDVS+ DK   +NP LWENIA KG  +++++N+ SSIAGR
Sbjct: 364 ALVPLHNKLCIIRNNMSMSLVDVSNPDK---NNPRLWENIAVKGQSKSILSNIWSSIAGR 423

Query: 423 SGLKSHIVHCQVLQA 438
           + LKSHIVHCQVLQA
Sbjct: 424 A-LKSHIVHCQVLQA 434

BLAST of CmaCh02G012050 vs. TAIR 10
Match: AT1G22040.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 4.1e-38
Identity = 127/438 (29.00%), Postives = 190/438 (43.38%), Query Frame = 0

Query: 77  LLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMADEWVYVIKR 136
           L+P LPD+L+I  L R+PR+ +  +RLV +RW   +  +  YSLRK LG  +EW+YV+ +
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 137 DRDRRISWHAFDPTYQLWQSLPPLPV---------------------------------- 196
             + ++ W+A DP    WQ LPP+PV                                  
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 197 -EYSEALGF-GCAV--LSGCHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHC 256
            + SE + F GCA+  + G  LY+ GG    + ++  V  +    N W     ML  R  
Sbjct: 163 RDSSEQMPFCGCAIGAVDG-GLYVIGGLSRSK-TVSCVWRFDPILNSWSEVSSMLASRAY 222

Query: 257 FGSCVINNCLYVAGG--ECEGIQRTLRSAEVYDPNKNKWSFISDM---------SSAMVP 316
             + V+N  LYV GG     G    L+SAEVYDP+ + WS +  M         ++ +  
Sbjct: 223 SKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLAD 282

Query: 317 LIGVVHDGLWFLKG-LGARREVMS---------EAYSPETNTWTSVSDGMIAGW------ 376
           L+  +  G+    G L   + + S         E Y PETN W  +  GM  GW      
Sbjct: 283 LLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAG 342

Query: 377 RNPSISLNGQLYALDCS---DGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAAALVSLN 436
              S+ ++G+LYA D S   +  K++VYD   D+W   +        + +     L   +
Sbjct: 343 TKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIGEVPVYDLTDSESPYLLAGFH 402

BLAST of CmaCh02G012050 vs. TAIR 10
Match: AT3G61350.1 (SKP1 interacting partner 4 )

HSP 1 Score: 133.3 bits (334), Expect = 4.8e-31
Identity = 89/347 (25.65%), Postives = 155/347 (44.67%), Query Frame = 0

Query: 69  ERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMAD 128
           +    Q  L+ G+PDD++ +CL RVPR  H  ++ V +RW   +  +     R    +A+
Sbjct: 13  QSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAE 72

Query: 129 EWVYVIKRDRDRRISWHAFDP--TYQLWQSLPPLP-VEYSEALGFGCAVLSGCHLYLFGG 188
            W+Y + RD    +  H  +P  + + W+ +   P +   E +GF  AVL G  L++ GG
Sbjct: 73  SWIYALCRDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGMGF--AVL-GKRLFVLGG 132

Query: 189 KDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTLRSA 248
              +  +   +  Y A  N W      L  + C+ +C   +   +A G         R+ 
Sbjct: 133 CGWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTW 192

Query: 249 EVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLK-GLGARREVMSEAYSPETNTWTSVS 308
           ++YDP        SD++         V DG  +++ G+G      +  YS  +  W  + 
Sbjct: 193 DIYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGGVGGS---STAVYSASSGIWERMD 252

Query: 309 DGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHAL---EA 368
           D M +GWR P++ + G LY LD + G KL ++   T  W       +H+G    L   + 
Sbjct: 253 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMW-------IHIGKLSQLVMKQP 312

Query: 369 AALVSLNGKLCIIRNNMSISLVDVSSLDKS-------VESNPHLWEN 402
             LVS+   + +I  + S  ++DV ++ K+         S P  W++
Sbjct: 313 CRLVSIGNSIFVIGKDCSTVVIDVENVRKNKMNGVMVCSSIPKTWDD 346

BLAST of CmaCh02G012050 vs. TAIR 10
Match: AT1G30090.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 6.3e-31
Identity = 89/296 (30.07%), Postives = 133/296 (44.93%), Query Frame = 0

Query: 64  KTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMG--NFYYSLR 123
           ++S  E +    PL+PGLPDD+A+ CL+RVP   H   + VCKRW+ LL G    +++ R
Sbjct: 40  RSSELELSLRGEPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWH-LLFGTKETFFAKR 99

Query: 124 KSLGMADEWVYVIKRDR-DRRISWHAFDPTYQLWQSLPPLPVEYSEA-LGFGCAVL--SG 183
           K  G  D W++V+   R   +I W   D     W  +P +P        GF    +   G
Sbjct: 100 KEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREG 159

Query: 184 CHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEG 243
                 G        +  V+ Y    N W     M+  R  F S VI+  +Y AGG    
Sbjct: 160 TMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAAD 219

Query: 244 IQRTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDG--------LW--FLKGLGARRE 303
           +   L  AEV +P    W  +S+M + M      V +G        LW  F+   G    
Sbjct: 220 LYE-LDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRG---- 279

Query: 304 VMSEAYSPETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
              + Y P T+ W ++S G+  GW   S+ +  +L+ +   +  K++VYD  TDSW
Sbjct: 280 ---QVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSW 326

BLAST of CmaCh02G012050 vs. TAIR 10
Match: AT1G67480.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-28
Identity = 81/289 (28.03%), Postives = 133/289 (46.02%), Query Frame = 0

Query: 66  SRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLG 125
           SR     +  PL+PGLPDD+A  CL  VPR     +  VCK+W  ++    + ++R+  G
Sbjct: 28  SRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAG 87

Query: 126 MADEWVYVIKRD---RDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 185
           M +EW+YV+  +   +D R  W   D   Q   SLPP+P       GF   V+ G  L +
Sbjct: 88  MLEEWLYVLTMNAGGKDNR--WEVMDCLGQKLSSLPPMP--GPAKTGFKVVVVDG-KLLV 147

Query: 186 FGGKDPIRGSM---RRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQ 245
             G   I GS+     V  Y    N W R  D+   R+ F    +N  +YV GG   G+ 
Sbjct: 148 IAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGG--HGVD 207

Query: 246 -RTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREV----MSEAYS 305
             +L SAEVYDP    W+FI  +            +G  ++ G  +   +    + + Y+
Sbjct: 208 GESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSKLLDVYN 267

Query: 306 PETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
            +  +W    +G+        + +  +L+ +D  +  K+ V+++  ++W
Sbjct: 268 TQCGSWHGSKNGLT--MVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETW 307

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q93W936.7e-21179.31F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g5527... [more]
Q9LM555.8e-3729.00F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g2204... [more]
Q9M2C96.8e-3025.65F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana OX=3702 GN=SKIP4 PE=1 S... [more]
Q9C6Z08.9e-3030.07F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g3009... [more]
Q9CAG81.4e-2728.03F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g6748... [more]
Match NameE-valueIdentityDescription
AT1G55270.14.7e-21279.31Galactose oxidase/kelch repeat superfamily protein [more]
AT1G22040.14.1e-3829.00Galactose oxidase/kelch repeat superfamily protein [more]
AT3G61350.14.8e-3125.65SKP1 interacting partner 4 [more]
AT1G30090.16.3e-3130.07Galactose oxidase/kelch repeat superfamily protein [more]
AT1G67480.11.0e-2828.03Galactose oxidase/kelch repeat superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006652Kelch repeat type 1SMARTSM00612kelc_smartcoord: 179..226
e-value: 2.3E-5
score: 33.8
coord: 227..275
e-value: 8.5E-9
score: 45.2
IPR006652Kelch repeat type 1PFAMPF01344Kelch_1coord: 216..262
e-value: 3.3E-14
score: 52.2
coord: 172..212
e-value: 2.9E-4
score: 20.4
IPR015915Kelch-type beta propellerGENE3D2.120.10.80coord: 118..394
e-value: 4.0E-36
score: 126.5
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 136..377
IPR001810F-box domainPFAMPF00646F-boxcoord: 78..112
e-value: 1.6E-5
score: 24.6
NoneNo IPR availablePANTHERPTHR46344OS02G0202900 PROTEINcoord: 17..437
NoneNo IPR availablePANTHERPTHR46344:SF17F-BOX DOMAIN, GALACTOSE OXIDASE, BETA-PROPELLER-RELATEDcoord: 17..437
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 71..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G012050.1CmaCh02G012050.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding