Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAGGAAGAAAAAATCAGTATTTGGGTGTAGCACAGCGTCCCATCTGTAGCATGTAATTGTTTCCTTTTAGTTTAGCTACCAGAGAAGAAGGGAGGAGAGTGGACTGGTTCTCTCTGCGTTTTTGTGTGCGCGTAGGAGAGAGAGAGAGAAAGAGAATCCGGGTTCCCTTTTTCTCACGCTTTGTAGTCCTTCTAAGCGGTTATTGGGGTTAATTCCTTCTGTTAGATCAGATTTTTCAAGGGTTCAAGTTTTTAGCTCAAAGGGTTCGTGATCCGACTCTACTTGGCCTCTTTTAACCTCGCTTTGGATGCTGGGTGCGCCTACAAATTGAATATATGGTTCTTTGCTTTCGAAATGAACGCATCGGTTGAACAATCTTCAAGTGCTCAAAGGGGATTTCGAATTCAAGCTCCACTGGTTAGTTGAATCGAAATTTATACTTAATTTACTGCCAATTAAGTGATCTGTGGAACTGCTTCTGGGTAATTTCGATTACGAGCGCTTTTCTTCGCCGCAACTCCTCGCATTTCTTCTATACTGGTTTTACTTCGTGAATTTCTAGTAAAATCGTAGTGGGTTTTAGCTAATGCACTGTAATTTGAGAAAGAATTTGAAGTTTGATTCGTATGCGATGATTCTCGTATCTTACTTCGATTATTGGGGTTTTCTGCGGTGGATTTTTTTAGGTTCCCGGGATTGTGCCCAATTCGTGGCTTATTTCATCAGCATTCTGTTGAATATTCTAATTATCCTTCTGAGATTTGCTTTTTTGCGTTCTGAATGCTGGATTTTGTTGTCAATATTCTTTCAGAATTGATTCCAAGTATGTTCACAACGATGCTTAGTTTTAAAGTAAACTCTAGTTAAGTTTTTCATCGGATTTTGGGTTTGTTTTGGAACAAATTGTTCTGGTTTTATTCTATTACTTCTTTTGAAGCTGCATCTTGGAGGAACTTATGAGGGTTATGAAATATGAACAAAATGTCGCCGCAGATTCGAGTTGCACAGAGTGTTAGATCCATGTCGATTTTTAAAGATTCACTGATAGGCGAATTGATTCGACTAAGAATATGCCGGATTAGTGTGAGATCCCACATTGGTTGGAGAGGGGAGTGACGGCTTCTTTATAGAAGGGTGTGAAAACCTCTCCCTAGTAGACGCGTTTTAAAAACCTTAAGGGGAAACCCGAAAGGGAAAACCCAAAGAGGACAATATCTGCTAGCTGTGAGCTTGGGTTGTTACAATAAGCTTCCTAAGATAAATTTAATATATCCTCTAGTAGGTGTATATTGAGTGAGACTTTTCGTTGTTTCCCGTTGATTTTTACGAGTATGCGCATCTTGGAGGAAGTGATGTGATGTGCTCAAACCTTTTAACATATTACAGTTTGTTATGGTCTTCCTCACGGCGTGGTTGGTTCCGAATTCCCTTTATGCAGCCAGGCCACCATAGGAGCTGTGCCCTTTAGTCCTATTGAACTAAAGATAGAAGTTGCGGTGTAATTCTCGGATGTCGTACTGTCCTTAGACACATAATACCAACTATCCAAATATAGGGGCAAAACTTAGGACTTCGAACTGAATGTCATAGACGATCCACTGGTTTTCGTATGGGTTATCTTTGTCTTTGTTTTTCCTTTTTGGTTAGTTGATATGCAAATTTTTGCATCTAACTGGAAATATGTTGTAGGTTGATTCTGTGTCATGCTATTGCAAAGTAGACTCAGGCTTGAAGACAGTTGTTGGAGCTAGAAAATTCGTCCCTGGCTCAAAAATATGTATCCAGCCTGATATTAATCCAAATGCGCATAGAAGTAAAACTTCACGGAGAGAAAGGACCCGAGTCCAGCCTCCGCTTCTACCAGGCCTTCCAGATGATCTTGCCATTGCTTGTCTGATTCGAGTCCCTCGAGTGGAACATAGGAAACTCCGCCTTGTTTGCAAGAGATGGTATCGACTTCTGATGGGAAACTTTTATTATTCTCTAAGGAAAAGTCTTGGCATGGCAGATGAGTGGGTCTATGTTATCAAAAGAGACCGTGATCGAAGGATCTCGTGGCATGCTTTTGATCCGACCTACCAGCTTTGGCAATCACTTCCACCCCTTCCCGTCGAATACTCTGAGGCTCTTGGTTTTGGCTGTGCTGTTCTTAGCGGTTGCCACCTATACTTATTTGGAGGGAAAGATCCAATAAGGGGATCGATGAGGCGCGTGATTTTCTACAGTGCCCGTACAAACAAATGGCATAGAGCACCTGATATGCTTCGAAAACGTCATTGTTTCGGTTCTTGTGTTATAAACAACTGCCTTTATGTTGCTGGCGGTGAATGTGAGGGGATCCAGAGAACTCTTCGTTCTGCTGAAGTTTATGATCCCAACAAGAACAAATGGAGCTTTATTTCAGATATGAGCTCAGCTATGGTGCCATTAATTGGTGTAGTTCATGACGGGTTGTGGTTCCTTAAAGGACTCGGAGCTCGCAGAGAGGTCATGAGCGAAGCCTATTCTCCTGAAACTAATACTTGGACGTCGGTTAGTGACGGTATGATCGCTGGCTGGCGAAACCCAAGTATTTCTTTGAATGGACAACTTTATGCCTTGGATTGCAGTGATGGATGCAAGCTAAGGGTTTATGATAGTGCAACAGACTCATGGAACAAATTCATGGATAGCAAGCTCCATCTTGGAAGTTCTCATGCTCTGGAGGCTGCTGCGCTCGTTTCGCTTAATGGGAAGCTTTGCATTATACGCAACAACATGAGTATCAGCCTTGTCGACGTTTCGAGTCTGGATAAAAGTGTCGAGAGCAATCCTCACCTATGGGAAAATATTGCTGGGAAAGGTCCCCTGAGGACGTTAGTTACAAATTTATTGTCGAGCATAGCTGGGCGAAGCGGGTTGAAGAGTCATATTGTGCATTGTCAAGTGCTCCAGGCATGA
mRNA sequence
AAAAAAAAAAAAAAAAAAAAAAGGAAGAAAAAATCAGTATTTGGGTGTAGCACAGCGTCCCATCTGTAGCATGTAATTGTTTCCTTTTAGTTTAGCTACCAGAGAAGAAGGGAGGAGAGTGGACTGGTTCTCTCTGCGTTTTTGTGTGCGCGTAGGAGAGAGAGAGAGAAAGAGAATCCGGGTTCCCTTTTTCTCACGCTTTGTAGTCCTTCTAAGCGGTTATTGGGGTTAATTCCTTCTGTTAGATCAGATTTTTCAAGGGTTCAAGTTTTTAGCTCAAAGGGTTCGTGATCCGACTCTACTTGGCCTCTTTTAACCTCGCTTTGGATGCTGGGTGCGCCTACAAATTGAATATATGGTTCTTTGCTTTCGAAATGAACGCATCGGTTGAACAATCTTCAAGTGCTCAAAGGGGATTTCGAATTCAAGCTCCACTGGTTGATTCTGTGTCATGCTATTGCAAAGTAGACTCAGGCTTGAAGACAGTTGTTGGAGCTAGAAAATTCGTCCCTGGCTCAAAAATATGTATCCAGCCTGATATTAATCCAAATGCGCATAGAAGTAAAACTTCACGGAGAGAAAGGACCCGAGTCCAGCCTCCGCTTCTACCAGGCCTTCCAGATGATCTTGCCATTGCTTGTCTGATTCGAGTCCCTCGAGTGGAACATAGGAAACTCCGCCTTGTTTGCAAGAGATGGTATCGACTTCTGATGGGAAACTTTTATTATTCTCTAAGGAAAAGTCTTGGCATGGCAGATGAGTGGGTCTATGTTATCAAAAGAGACCGTGATCGAAGGATCTCGTGGCATGCTTTTGATCCGACCTACCAGCTTTGGCAATCACTTCCACCCCTTCCCGTCGAATACTCTGAGGCTCTTGGTTTTGGCTGTGCTGTTCTTAGCGGTTGCCACCTATACTTATTTGGAGGGAAAGATCCAATAAGGGGATCGATGAGGCGCGTGATTTTCTACAGTGCCCGTACAAACAAATGGCATAGAGCACCTGATATGCTTCGAAAACGTCATTGTTTCGGTTCTTGTGTTATAAACAACTGCCTTTATGTTGCTGGCGGTGAATGTGAGGGGATCCAGAGAACTCTTCGTTCTGCTGAAGTTTATGATCCCAACAAGAACAAATGGAGCTTTATTTCAGATATGAGCTCAGCTATGGTGCCATTAATTGGTGTAGTTCATGACGGGTTGTGGTTCCTTAAAGGACTCGGAGCTCGCAGAGAGGTCATGAGCGAAGCCTATTCTCCTGAAACTAATACTTGGACGTCGGTTAGTGACGGTATGATCGCTGGCTGGCGAAACCCAAGTATTTCTTTGAATGGACAACTTTATGCCTTGGATTGCAGTGATGGATGCAAGCTAAGGGTTTATGATAGTGCAACAGACTCATGGAACAAATTCATGGATAGCAAGCTCCATCTTGGAAGTTCTCATGCTCTGGAGGCTGCTGCGCTCGTTTCGCTTAATGGGAAGCTTTGCATTATACGCAACAACATGAGTATCAGCCTTGTCGACGTTTCGAGTCTGGATAAAAGTGTCGAGAGCAATCCTCACCTATGGGAAAATATTGCTGGGAAAGGTCCCCTGAGGACGTTAGTTACAAATTTATTGTCGAGCATAGCTGGGCGAAGCGGGTTGAAGAGTCATATTGTGCATTGTCAAGTGCTCCAGGCATGA
Coding sequence (CDS)
ATGAACGCATCGGTTGAACAATCTTCAAGTGCTCAAAGGGGATTTCGAATTCAAGCTCCACTGGTTGATTCTGTGTCATGCTATTGCAAAGTAGACTCAGGCTTGAAGACAGTTGTTGGAGCTAGAAAATTCGTCCCTGGCTCAAAAATATGTATCCAGCCTGATATTAATCCAAATGCGCATAGAAGTAAAACTTCACGGAGAGAAAGGACCCGAGTCCAGCCTCCGCTTCTACCAGGCCTTCCAGATGATCTTGCCATTGCTTGTCTGATTCGAGTCCCTCGAGTGGAACATAGGAAACTCCGCCTTGTTTGCAAGAGATGGTATCGACTTCTGATGGGAAACTTTTATTATTCTCTAAGGAAAAGTCTTGGCATGGCAGATGAGTGGGTCTATGTTATCAAAAGAGACCGTGATCGAAGGATCTCGTGGCATGCTTTTGATCCGACCTACCAGCTTTGGCAATCACTTCCACCCCTTCCCGTCGAATACTCTGAGGCTCTTGGTTTTGGCTGTGCTGTTCTTAGCGGTTGCCACCTATACTTATTTGGAGGGAAAGATCCAATAAGGGGATCGATGAGGCGCGTGATTTTCTACAGTGCCCGTACAAACAAATGGCATAGAGCACCTGATATGCTTCGAAAACGTCATTGTTTCGGTTCTTGTGTTATAAACAACTGCCTTTATGTTGCTGGCGGTGAATGTGAGGGGATCCAGAGAACTCTTCGTTCTGCTGAAGTTTATGATCCCAACAAGAACAAATGGAGCTTTATTTCAGATATGAGCTCAGCTATGGTGCCATTAATTGGTGTAGTTCATGACGGGTTGTGGTTCCTTAAAGGACTCGGAGCTCGCAGAGAGGTCATGAGCGAAGCCTATTCTCCTGAAACTAATACTTGGACGTCGGTTAGTGACGGTATGATCGCTGGCTGGCGAAACCCAAGTATTTCTTTGAATGGACAACTTTATGCCTTGGATTGCAGTGATGGATGCAAGCTAAGGGTTTATGATAGTGCAACAGACTCATGGAACAAATTCATGGATAGCAAGCTCCATCTTGGAAGTTCTCATGCTCTGGAGGCTGCTGCGCTCGTTTCGCTTAATGGGAAGCTTTGCATTATACGCAACAACATGAGTATCAGCCTTGTCGACGTTTCGAGTCTGGATAAAAGTGTCGAGAGCAATCCTCACCTATGGGAAAATATTGCTGGGAAAGGTCCCCTGAGGACGTTAGTTACAAATTTATTGTCGAGCATAGCTGGGCGAAGCGGGTTGAAGAGTCATATTGTGCATTGTCAAGTGCTCCAGGCATGA
Protein sequence
MNASVEQSSSAQRGFRIQAPLVDSVSCYCKVDSGLKTVVGARKFVPGSKICIQPDINPNAHRSKTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMADEWVYVIKRDRDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREVMSEAYSPETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAAALVSLNGKLCIIRNNMSISLVDVSSLDKSVESNPHLWENIAGKGPLRTLVTNLLSSIAGRSGLKSHIVHCQVLQA
Homology
BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match:
Q93W93 (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1)
HSP 1 Score: 734.6 bits (1895), Expect = 6.7e-211
Identity = 345/435 (79.31%), Postives = 387/435 (88.97%), Query Frame = 0
Query: 3 ASVEQSSSAQRGFRIQAPLVDSVSCYCKVDSGLKTVVGARKFVPGSKICIQPDINPNAHR 62
+S QS + RGFR+QAPLVDSVSCYC+VDSGLKTVV ARKFVPGSK+CIQPDINPNAHR
Sbjct: 4 SSQRQSPNGSRGFRLQAPLVDSVSCYCRVDSGLKTVVEARKFVPGSKLCIQPDINPNAHR 63
Query: 63 SKTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRK 122
K S+RERTR+QPPLLPGLPDDLA+ACLIRVPR EHRKLRLVCKRWYRL GNF+YS RK
Sbjct: 64 RKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRK 123
Query: 123 SLGMADEWVYVIKRDRDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 182
LGM++EWVYV KRDRD +ISW+ FDP QLWQ LPP+P EYSEA+GFGCAVLSGCHLYL
Sbjct: 124 LLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYL 183
Query: 183 FGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTL 242
FGGKDP+RGSMRRVIFY+ARTNKWHRAPDMLRKRH FG CVINNCLYVAGGECEGIQRTL
Sbjct: 184 FGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTL 243
Query: 243 RSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREVMSEAYSPETNTWTS 302
RSAEVYDPNKN+WSFI+DMS+AMVPLIGVV+D WFLKGLG+ + VMSEAY PE N+W+
Sbjct: 244 RSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSP 303
Query: 303 VSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAA 362
VSDGM+AGWRNP SLNG+LY LDC DGCKLRV+D +TDSWNKFMDSK HLG+S +LEAA
Sbjct: 304 VSDGMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSWNKFMDSKAHLGNSKSLEAA 363
Query: 363 ALVSLNGKLCIIRNNMSISLVDVSSLDKSVESNPHLWENIAGKGPLRTLVTNLLSSIAGR 422
ALV L+ KLCIIRNNMS+SLVDVS+ DK +NP LWENIA KG +++++N+ SSIAGR
Sbjct: 364 ALVPLHNKLCIIRNNMSMSLVDVSNPDK---NNPRLWENIAVKGQSKSILSNIWSSIAGR 423
Query: 423 SGLKSHIVHCQVLQA 438
+ LKSHIVHCQVLQA
Sbjct: 424 A-LKSHIVHCQVLQA 434
BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match:
Q9LM55 (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1)
HSP 1 Score: 156.8 bits (395), Expect = 5.8e-37
Identity = 127/438 (29.00%), Postives = 190/438 (43.38%), Query Frame = 0
Query: 77 LLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMADEWVYVIKR 136
L+P LPD+L+I L R+PR+ + +RLV +RW + + YSLRK LG +EW+YV+ +
Sbjct: 43 LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102
Query: 137 DRDRRISWHAFDPTYQLWQSLPPLPV---------------------------------- 196
+ ++ W+A DP WQ LPP+PV
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162
Query: 197 -EYSEALGF-GCAV--LSGCHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHC 256
+ SE + F GCA+ + G LY+ GG + ++ V + N W ML R
Sbjct: 163 RDSSEQMPFCGCAIGAVDG-GLYVIGGLSRSK-TVSCVWRFDPILNSWSEVSSMLASRAY 222
Query: 257 FGSCVINNCLYVAGG--ECEGIQRTLRSAEVYDPNKNKWSFISDM---------SSAMVP 316
+ V+N LYV GG G L+SAEVYDP+ + WS + M ++ +
Sbjct: 223 SKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLAD 282
Query: 317 LIGVVHDGLWFLKG-LGARREVMS---------EAYSPETNTWTSVSDGMIAGW------ 376
L+ + G+ G L + + S E Y PETN W + GM GW
Sbjct: 283 LLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAG 342
Query: 377 RNPSISLNGQLYALDCS---DGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAAALVSLN 436
S+ ++G+LYA D S + K++VYD D+W + + + L +
Sbjct: 343 TKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIGEVPVYDLTDSESPYLLAGFH 402
BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match:
Q9M2C9 (F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana OX=3702 GN=SKIP4 PE=1 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 6.8e-30
Identity = 89/347 (25.65%), Postives = 155/347 (44.67%), Query Frame = 0
Query: 69 ERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMAD 128
+ Q L+ G+PDD++ +CL RVPR H ++ V +RW + + R +A+
Sbjct: 13 QSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAE 72
Query: 129 EWVYVIKRDRDRRISWHAFDP--TYQLWQSLPPLP-VEYSEALGFGCAVLSGCHLYLFGG 188
W+Y + RD + H +P + + W+ + P + E +GF AVL G L++ GG
Sbjct: 73 SWIYALCRDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGMGF--AVL-GKRLFVLGG 132
Query: 189 KDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTLRSA 248
+ + + Y A N W L + C+ +C + +A G R+
Sbjct: 133 CGWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTW 192
Query: 249 EVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLK-GLGARREVMSEAYSPETNTWTSVS 308
++YDP SD++ V DG +++ G+G + YS + W +
Sbjct: 193 DIYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGGVGGS---STAVYSASSGIWERMD 252
Query: 309 DGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHAL---EA 368
D M +GWR P++ + G LY LD + G KL ++ T W +H+G L +
Sbjct: 253 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMW-------IHIGKLSQLVMKQP 312
Query: 369 AALVSLNGKLCIIRNNMSISLVDVSSLDKS-------VESNPHLWEN 402
LVS+ + +I + S ++DV ++ K+ S P W++
Sbjct: 313 CRLVSIGNSIFVIGKDCSTVVIDVENVRKNKMNGVMVCSSIPKTWDD 346
BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match:
Q9C6Z0 (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g30090 PE=2 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 8.9e-30
Identity = 89/296 (30.07%), Postives = 133/296 (44.93%), Query Frame = 0
Query: 64 KTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMG--NFYYSLR 123
++S E + PL+PGLPDD+A+ CL+RVP H + VCKRW+ LL G +++ R
Sbjct: 40 RSSELELSLRGEPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWH-LLFGTKETFFAKR 99
Query: 124 KSLGMADEWVYVIKRDR-DRRISWHAFDPTYQLWQSLPPLPVEYSEA-LGFGCAVL--SG 183
K G D W++V+ R +I W D W +P +P GF + G
Sbjct: 100 KEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREG 159
Query: 184 CHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEG 243
G + V+ Y N W M+ R F S VI+ +Y AGG
Sbjct: 160 TMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAAD 219
Query: 244 IQRTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDG--------LW--FLKGLGARRE 303
+ L AEV +P W +S+M + M V +G LW F+ G
Sbjct: 220 LYE-LDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRG---- 279
Query: 304 VMSEAYSPETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
+ Y P T+ W ++S G+ GW S+ + +L+ + + K++VYD TDSW
Sbjct: 280 ---QVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSW 326
BLAST of CmaCh02G012050 vs. ExPASy Swiss-Prot
Match:
Q9CAG8 (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g67480 PE=2 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 1.4e-27
Identity = 81/289 (28.03%), Postives = 133/289 (46.02%), Query Frame = 0
Query: 66 SRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLG 125
SR + PL+PGLPDD+A CL VPR + VCK+W ++ + ++R+ G
Sbjct: 28 SRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAG 87
Query: 126 MADEWVYVIKRD---RDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 185
M +EW+YV+ + +D R W D Q SLPP+P GF V+ G L +
Sbjct: 88 MLEEWLYVLTMNAGGKDNR--WEVMDCLGQKLSSLPPMP--GPAKTGFKVVVVDG-KLLV 147
Query: 186 FGGKDPIRGSM---RRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQ 245
G I GS+ V Y N W R D+ R+ F +N +YV GG G+
Sbjct: 148 IAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGG--HGVD 207
Query: 246 -RTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREV----MSEAYS 305
+L SAEVYDP W+FI + +G ++ G + + + + Y+
Sbjct: 208 GESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSKLLDVYN 267
Query: 306 PETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
+ +W +G+ + + +L+ +D + K+ V+++ ++W
Sbjct: 268 TQCGSWHGSKNGLT--MVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETW 307
BLAST of CmaCh02G012050 vs. TAIR 10
Match:
AT1G55270.1 (Galactose oxidase/kelch repeat superfamily protein )
HSP 1 Score: 734.6 bits (1895), Expect = 4.7e-212
Identity = 345/435 (79.31%), Postives = 387/435 (88.97%), Query Frame = 0
Query: 3 ASVEQSSSAQRGFRIQAPLVDSVSCYCKVDSGLKTVVGARKFVPGSKICIQPDINPNAHR 62
+S QS + RGFR+QAPLVDSVSCYC+VDSGLKTVV ARKFVPGSK+CIQPDINPNAHR
Sbjct: 4 SSQRQSPNGSRGFRLQAPLVDSVSCYCRVDSGLKTVVEARKFVPGSKLCIQPDINPNAHR 63
Query: 63 SKTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRK 122
K S+RERTR+QPPLLPGLPDDLA+ACLIRVPR EHRKLRLVCKRWYRL GNF+YS RK
Sbjct: 64 RKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRK 123
Query: 123 SLGMADEWVYVIKRDRDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 182
LGM++EWVYV KRDRD +ISW+ FDP QLWQ LPP+P EYSEA+GFGCAVLSGCHLYL
Sbjct: 124 LLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYL 183
Query: 183 FGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTL 242
FGGKDP+RGSMRRVIFY+ARTNKWHRAPDMLRKRH FG CVINNCLYVAGGECEGIQRTL
Sbjct: 184 FGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTL 243
Query: 243 RSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREVMSEAYSPETNTWTS 302
RSAEVYDPNKN+WSFI+DMS+AMVPLIGVV+D WFLKGLG+ + VMSEAY PE N+W+
Sbjct: 244 RSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSP 303
Query: 303 VSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAA 362
VSDGM+AGWRNP SLNG+LY LDC DGCKLRV+D +TDSWNKFMDSK HLG+S +LEAA
Sbjct: 304 VSDGMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSWNKFMDSKAHLGNSKSLEAA 363
Query: 363 ALVSLNGKLCIIRNNMSISLVDVSSLDKSVESNPHLWENIAGKGPLRTLVTNLLSSIAGR 422
ALV L+ KLCIIRNNMS+SLVDVS+ DK +NP LWENIA KG +++++N+ SSIAGR
Sbjct: 364 ALVPLHNKLCIIRNNMSMSLVDVSNPDK---NNPRLWENIAVKGQSKSILSNIWSSIAGR 423
Query: 423 SGLKSHIVHCQVLQA 438
+ LKSHIVHCQVLQA
Sbjct: 424 A-LKSHIVHCQVLQA 434
BLAST of CmaCh02G012050 vs. TAIR 10
Match:
AT1G22040.1 (Galactose oxidase/kelch repeat superfamily protein )
HSP 1 Score: 156.8 bits (395), Expect = 4.1e-38
Identity = 127/438 (29.00%), Postives = 190/438 (43.38%), Query Frame = 0
Query: 77 LLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMADEWVYVIKR 136
L+P LPD+L+I L R+PR+ + +RLV +RW + + YSLRK LG +EW+YV+ +
Sbjct: 43 LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102
Query: 137 DRDRRISWHAFDPTYQLWQSLPPLPV---------------------------------- 196
+ ++ W+A DP WQ LPP+PV
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162
Query: 197 -EYSEALGF-GCAV--LSGCHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHC 256
+ SE + F GCA+ + G LY+ GG + ++ V + N W ML R
Sbjct: 163 RDSSEQMPFCGCAIGAVDG-GLYVIGGLSRSK-TVSCVWRFDPILNSWSEVSSMLASRAY 222
Query: 257 FGSCVINNCLYVAGG--ECEGIQRTLRSAEVYDPNKNKWSFISDM---------SSAMVP 316
+ V+N LYV GG G L+SAEVYDP+ + WS + M ++ +
Sbjct: 223 SKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLAD 282
Query: 317 LIGVVHDGLWFLKG-LGARREVMS---------EAYSPETNTWTSVSDGMIAGW------ 376
L+ + G+ G L + + S E Y PETN W + GM GW
Sbjct: 283 LLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAG 342
Query: 377 RNPSISLNGQLYALDCS---DGCKLRVYDSATDSWNKFMDSKLHLGSSHALEAAALVSLN 436
S+ ++G+LYA D S + K++VYD D+W + + + L +
Sbjct: 343 TKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIGEVPVYDLTDSESPYLLAGFH 402
BLAST of CmaCh02G012050 vs. TAIR 10
Match:
AT3G61350.1 (SKP1 interacting partner 4 )
HSP 1 Score: 133.3 bits (334), Expect = 4.8e-31
Identity = 89/347 (25.65%), Postives = 155/347 (44.67%), Query Frame = 0
Query: 69 ERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLGMAD 128
+ Q L+ G+PDD++ +CL RVPR H ++ V +RW + + R +A+
Sbjct: 13 QSNETQIALISGVPDDISKSCLARVPREYHMAMKCVSRRWRDFVCSDEMCDYRNEFNLAE 72
Query: 129 EWVYVIKRDRDRRISWHAFDP--TYQLWQSLPPLP-VEYSEALGFGCAVLSGCHLYLFGG 188
W+Y + RD + H +P + + W+ + P + E +GF AVL G L++ GG
Sbjct: 73 SWIYALCRDISGGVFLHMLNPFSSRRSWKRINDYPYIPMREGMGF--AVL-GKRLFVLGG 132
Query: 189 KDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQRTLRSA 248
+ + + Y A N W L + C+ +C + +A G R+
Sbjct: 133 CGWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTW 192
Query: 249 EVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLK-GLGARREVMSEAYSPETNTWTSVS 308
++YDP SD++ V DG +++ G+G + YS + W +
Sbjct: 193 DIYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGGVGGS---STAVYSASSGIWERMD 252
Query: 309 DGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSWNKFMDSKLHLGSSHAL---EA 368
D M +GWR P++ + G LY LD + G KL ++ T W +H+G L +
Sbjct: 253 DDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMW-------IHIGKLSQLVMKQP 312
Query: 369 AALVSLNGKLCIIRNNMSISLVDVSSLDKS-------VESNPHLWEN 402
LVS+ + +I + S ++DV ++ K+ S P W++
Sbjct: 313 CRLVSIGNSIFVIGKDCSTVVIDVENVRKNKMNGVMVCSSIPKTWDD 346
BLAST of CmaCh02G012050 vs. TAIR 10
Match:
AT1G30090.1 (Galactose oxidase/kelch repeat superfamily protein )
HSP 1 Score: 132.9 bits (333), Expect = 6.3e-31
Identity = 89/296 (30.07%), Postives = 133/296 (44.93%), Query Frame = 0
Query: 64 KTSRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMG--NFYYSLR 123
++S E + PL+PGLPDD+A+ CL+RVP H + VCKRW+ LL G +++ R
Sbjct: 40 RSSELELSLRGEPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWH-LLFGTKETFFAKR 99
Query: 124 KSLGMADEWVYVIKRDR-DRRISWHAFDPTYQLWQSLPPLPVEYSEA-LGFGCAVL--SG 183
K G D W++V+ R +I W D W +P +P GF + G
Sbjct: 100 KEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREG 159
Query: 184 CHLYLFGGKDPIRGSMRRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEG 243
G + V+ Y N W M+ R F S VI+ +Y AGG
Sbjct: 160 TMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAAD 219
Query: 244 IQRTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDG--------LW--FLKGLGARRE 303
+ L AEV +P W +S+M + M V +G LW F+ G
Sbjct: 220 LYE-LDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRG---- 279
Query: 304 VMSEAYSPETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
+ Y P T+ W ++S G+ GW S+ + +L+ + + K++VYD TDSW
Sbjct: 280 ---QVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSW 326
BLAST of CmaCh02G012050 vs. TAIR 10
Match:
AT1G67480.1 (Galactose oxidase/kelch repeat superfamily protein )
HSP 1 Score: 125.6 bits (314), Expect = 1.0e-28
Identity = 81/289 (28.03%), Postives = 133/289 (46.02%), Query Frame = 0
Query: 66 SRRERTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLMGNFYYSLRKSLG 125
SR + PL+PGLPDD+A CL VPR + VCK+W ++ + ++R+ G
Sbjct: 28 SRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAG 87
Query: 126 MADEWVYVIKRD---RDRRISWHAFDPTYQLWQSLPPLPVEYSEALGFGCAVLSGCHLYL 185
M +EW+YV+ + +D R W D Q SLPP+P GF V+ G L +
Sbjct: 88 MLEEWLYVLTMNAGGKDNR--WEVMDCLGQKLSSLPPMP--GPAKTGFKVVVVDG-KLLV 147
Query: 186 FGGKDPIRGSM---RRVIFYSARTNKWHRAPDMLRKRHCFGSCVINNCLYVAGGECEGIQ 245
G I GS+ V Y N W R D+ R+ F +N +YV GG G+
Sbjct: 148 IAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGG--HGVD 207
Query: 246 -RTLRSAEVYDPNKNKWSFISDMSSAMVPLIGVVHDGLWFLKGLGARREV----MSEAYS 305
+L SAEVYDP W+FI + +G ++ G + + + + Y+
Sbjct: 208 GESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSKLLDVYN 267
Query: 306 PETNTWTSVSDGMIAGWRNPSISLNGQLYALDCSDGCKLRVYDSATDSW 344
+ +W +G+ + + +L+ +D + K+ V+++ ++W
Sbjct: 268 TQCGSWHGSKNGLT--MVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETW 307
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q93W93 | 6.7e-211 | 79.31 | F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g5527... | [more] |
Q9LM55 | 5.8e-37 | 29.00 | F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g2204... | [more] |
Q9M2C9 | 6.8e-30 | 25.65 | F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana OX=3702 GN=SKIP4 PE=1 S... | [more] |
Q9C6Z0 | 8.9e-30 | 30.07 | F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g3009... | [more] |
Q9CAG8 | 1.4e-27 | 28.03 | F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g6748... | [more] |