CmaCh02G011890 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G011890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionNon-structural maintenance of chromosomes element 1 homolog
LocationCma_Chr02: 7033145 .. 7037835 (-)
RNA-Seq ExpressionCmaCh02G011890
SyntenyCmaCh02G011890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTCTTCTCTTCTATGAGTTTGGCTGAAATTCCCTTACAGAATCAACCTTGTCTGAATCTTTGAGGTATTAGTTGACCTTGAATTAGGGTTCAGAATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCTCTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGGTTTTAATTTCTTTCTCCTTCCCCAGTTTGGTATTCAAGTTGGGAAGTAATGATTTAACGGTATGGAGTCCTGCTCGATTTTTGTCTAACAAATGATGGAGGATGTCTTTCTTAGATCATTTGTAAAAGATGCGTTTGAGTTCTTATAAATTTCTGTTCAAAGATTACCGAATATTTGCAATAAAATGGTTTCTGAGTATAATATGGAACCACATATTGGAAGAAATTGCATCAGGGTTCATATCCGTATACGTTTTGGAAATGTGTATTCTTATATCTTTCCTTAATCATTAGCATAAACGATTGAAAAGGAGGAGTGTTTTTAATTGATAATTTGGCCGACGGTTGAAAACTAAGATCTGTTCGATGTTTATTTTGGTGCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTGGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTGAGTTATCAACTATGGGAAGTACTGGCGTTCTTCAATAAACTGACCATTCTGCCAATTTTCTTAACAATAAACTATGGATACTTAGTGTTTACAATATATGCATCTTTTGTTTTGTTGTCGTAGTATTTCTTATGAACAAAAAATTGCTATGTCAGGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGGTTCCTCTTGTTTGTATATGACCAATACTACCGTTTTGAGTCTATTATTGCCAAAGTCAGCTGCATATTTAACTAAGGTTGGCATCTTTGGTCTTTTTCCTTGTAAATAAGACTAATTCCAGTCACCGTTTATATAGCGTACTGTGGACAAGAACTCTTTGGAATGAGTTTGTGAGATCCCACATCGTTTAGAGAGAGGAACGAGTGCCAGTGAGGACGTTGGGTCCCGAATGGGGTGAATTGTGAGATCCAACATCGGTTGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGCGTTTTAAAAACCTTAAGGGAAAGCCCAAAAAGGAAAAGCCAAGGAAGACAATATCTGCTAAAGGTGGGCTTGGGCTGTTACAAAGTTCTACAAGAGTATCATTTGATCTTTAGCTTATATCATTTATAGAAAGGTACACTAGTTCTTAAATTATGATTTGATACGAGTCATATTCTTCTTGAATTTAAATATTGCCAATGGAGTGCCAAGAGTTTTCTACATGGTAAAGCCTCGTAACTTATCGATCAAAATTGGATAATGGGACTGTTAGTCCGACAGTGGCATGAATGCCTTTAGAATATATTGATACATTCACTTCTTTGTGGCCACTTCAATTAAATTCGCCTAGGAGTCACTCTCAAGTTTGTTATTTCAACTTCTTTCTTTTCCAATACCTGAATTCTTATAATTGTTAAATTTGAGACTAAGAATTTAAGGCCACTCTTAAACTCTACACAATTTTGTTGCAATGCTTCTGATTTGCCCCCATTGTGGGTAAAATTGAGAACTGACAAAAGCTTCCAGCTCCTTGTATTACTCTCTTTGTAGGTCTTTTCTGCTTTTTCTCATTTCTAAGAATCCTATTGTATAATATTCGTATCATTGTTTAACTGTTACTGCTTTATCACTATCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGTTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGTTCTCTTCTTTTATGCCATTTTTGTGATTTACTAAGTCAATTATCATTTTATCTCAATTTTGTGCATTGCATTATTTTCCCCTATGCCCACACTGATAGGAGGAGCTGAACATTTGATGAAAAGGATTTTATGTTGACAGTGCAATTGGTCTGGATTTTAACATGATCCAAACTCCGTATAGTTTTTACCCTAAAGAACCTTAACAAACCTTATTTCCTTGATGATTTATATGTTTGCTGGACTTGTTATTCACAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGGTTATATGATGTGGTACCTTCCTAATTTAATCTTTTGATCTGCAAGATCTCTTGTTCCTAACAGTTCTTTAATGGACTATTATTTAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTGAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCGGCACAAGCTTCCCAACCTCCTCCAGATACGAGGAGAATAACGCGAAGTTCTGCACACCAGCGGTAGGTGCTTGAAATGAGGTACAGTTGTTTTGATATAGTTTCATGGATCCTAGTCTAGGAGTTGTGAAGTGTGCAGCAACTGCACCTTTTGATGTAGTGTCAAAATTATCATCATATTCATATTTAATTGAATTGGTTGTTTTCTCGTACACAGAATCGGAATGTAAAGTGCATTACACAGCGTAAGCCAAAAGTAAGTTTCTTTTTTTCTTTTCTTTTCTTTCTTTTAATCTCTTGTAATCTATAGCAGTGTTCTCCATTCTTGTCGTCCACACATGCAAGGAACGAGCTGTTCCATTGTAATGATTTTTTTTCTTTTTGTACCGAGGATATTTTTATTGTATTGTGAGTATAAATAGGTTCAATATCCTATAAATATCCCAAATTAGAGTAACAGCCCAAGCCTGCTACCAAGCCTATTGCTAACTGATATTGTTATTTTTGGATTTTCCCTTTTGAGGTTCCGCTCAAGGTTTTTAAAACACGTCAGCTAGGGAGAGTTTTTCATACTCTTATAAAGAATGTTTCGTTTCCCTCTCCAACCGATGTGGGATCTAACACCTTATTTATTTTTTTTATTGTGAATGAGTGTCCGAGCCAACTTTTGTCTCTATAGAATCATGAAAAACTATTTGACCTTACTACATTTGGTTATTATAGAAACACGTTAGATCTAAATTTTAAGTATGTGAGTACCATAGATTGAACTTGTTAACTCAGAATGGTTAACTGTAGCCTCTTTATTTAACAGGTATTATGCTTTTCGGTGGTGTATTGATGAACAGTTAAACATGTATGATGGGTCTGGATTGTGTACAAAGGTATGCAGCTCAATGCTGAAAATTTGACCGTTCATATTTACCATGCTTAGATTTAAGGATGAATATATCCACTCTAGAGAAGGAAGTCATAATTAAGCCGTTTAAATAGTGAGAACAAATTAGAGCACTCTGGAGAAGTCATCATAGCAGTGACATGAGATAAAAGTGGTGTCTTTGAACTGTTGAGAATAGAATCGATTATGAAACTTTAGATGGTGGGAAAGTGAAGCAATGAAAAGAATATGGCTAAATGTTTGTCTTTTTATATAATTAAATTATCTGAATTCATTACAAAAATGTCCCTTTATGAAGCTGACTTGGCTGTGAAAAGAGAGTTTGATCTAATTAGCATCTCGTGAATGACCTTCAATCATTCCAACTAAGCTGCAGTAGGTTTTCAAAAAAAGAACACATGTTTATGTAACCATCTAAGTCTATTACTAGTCGATATTGTCTTTTTTGGACTTTTCTTTTCAGGTTTTCCTTCAAGATTTTTAAAACGCGTCTGCTAGAGAGAGGTTTCTACATCCTTATAAAAAATGTTTCGTTCTCCTCCCCAACTGATATGGGATCTCACAATCCATTGAATTATGCTAACTTTTATTCTTTGTAGTTCAACAATACGCCAGACGAAGGATTTAACTTTTACTCTCTTGATCGATGATACGTGTTTTATATCAATTGAATATTGTTCTTATTAGTGGGCTATTCTCACTAGAGAACGAAAGAAACATCTGATGGGACGTGAGTGGATGCTTTGATGTCCTAAGGGCACACATGGCCTAAGCTTCTCAGCATTGTGGTTTGTGTCATTTGTACGACCTCTGTTTTTAAGCTTTTGCCTTGTTTAAACAAGAACAGAATCCAACGTAAAGTCTCAATTCAAAAAGGCATAACCATTTTGCCATGTATTATCTGTCTATTATTATAAAGTATGAGTAAATATTCGTCCTTCTCCTGTACTATTTTCTCAGGTACTATTATAATCAAAACCAAC

mRNA sequence

AACTCTTCTCTTCTATGAGTTTGGCTGAAATTCCCTTACAGAATCAACCTTGTCTGAATCTTTGAGGTATTAGTTGACCTTGAATTAGGGTTCAGAATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCTCTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTGGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGTTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTGAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCGGCACAAGCTTCCCAACCTCCTCCAGATACGAGGAGAATAACGCGAAGTTCTGCACACCAGCGAATCGGAATGTAAAGTGCATTACACAGCGTAAGCCAAAAGTATTATGCTTTTCGGTGGTGTATTGATGAACAGTTAAACATGTATGATGGGTCTGGATTGTGTACAAAGGTATGCAGCTCAATGCTGAAAATTTGACCGTTCATATTTACCATGCTTAGATTTAAGGATGAATATATCCACTCTAGAGAAGGAAGTCATAATTAAGCCGTTTAAATAGTGAGAACAAATTAGAGCACTCTGGAGAAGTCATCATAGCAGTGACATGAGATAAAAGTGGTGTCTTTGAACTGTTGAGAATAGAATCGATTATGAAACTTTAGATGGTGGGAAAGTGAAGCAATGAAAAGAATATGGCTAAATGTTTGTCTTTTTATATAATTAAATTATCTGAATTCATTACAAAAATGTCCCTTTATGAAGCTGACTTGGCTGTGAAAAGAGAGTTTGATCTAATTAGCATCTCGTGAATGACCTTCAATCATTCCAACTAAGCTGCAGTAGGTTTTCAAAAAAAGAACACATGTTTATGTAACCATCTAAGTCTATTACTAGTCGATATTGTCTTTTTTGGACTTTTCTTTTCAGGTTTTCCTTCAAGATTTTTAAAACGCGTCTGCTAGAGAGAGTTCAACAATACGCCAGACGAAGGATTTAACTTTTACTCTCTTGATCGATGATACGTGTTTTATATCAATTGAATATTGTTCTTATTAGTGGGCTATTCTCACTAGAGAACGAAAGAAACATCTGATGGGACGTGAGTGGATGCTTTGATGTCCTAAGGGCACACATGGCCTAAGCTTCTCAGCATTGTGGTTTGTGTCATTTGTACGACCTCTGTTTTTAAGCTTTTGCCTTGTTTAAACAAGAACAGAATCCAACGTAAAGTCTCAATTCAAAAAGGCATAACCATTTTGCCATGTATTATCTGTCTATTATTATAAAGTATGAGTAAATATTCGTCCTTCTCCTGTACTATTTTCTCAGGTACTATTATAATCAAAACCAAC

Coding sequence (CDS)

ATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCTCTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTGGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGTTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTGAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCGGCACAAGCTTCCCAACCTCCTCCAGATACGAGGAGAATAACGCGAAGTTCTGCACACCAGCGAATCGGAATGTAA

Protein sequence

MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPPPDTRRITRSSAHQRIGM
Homology
[Close]
BLAST of CmaCh02G011890 vs. ExPASy Swiss-Prot
Match: Q6PAF4 (Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis OX=8355 GN=nsmce1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-10
Identity = 62/282 (21.99%), Postives = 117/282 (41.49%), Query Frame = 0 

Query: 8   HHTLIQALLARGPLREDHFHLLFTRITE-KSPDNDRQLFNNYLLTMNKALSFAQFELRGC 67
           H   +QAL++ G +       L     E           ++++  +N+ L      +   
Sbjct: 9   HQRFLQALMSHGIMEGSAVRALHRHCCELHKVHYMHDKLDDFVGVLNRHLQPLFMTIEKG 68

Query: 68  RNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNIAALHL 127
             + DG  YY LVN V ++ +K+ + Y+  ++  ++  +E I    S  G  ++I+ L+L
Sbjct: 69  VGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELIIL--SDNGFATSISILNL 128

Query: 128 QLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAEL----AQDQWLNCTPDGFVNLGVRSF 187
             E Q                  S  +K+K + +L     Q++WL    +G   L  R  
Sbjct: 129 ADELQ------------------SKKMKKKEVEQLLQSFVQEKWL-IGRNGEYTLHTRCI 188

Query: 188 LDLRSWFRT--NDIPS-CEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPS 247
           ++L  + R    D+   C VC +  ++++LC N  C + +H  C  K   + K+   CP+
Sbjct: 189 MELEHYIRNTYQDVAKICNVCRKVAIQSQLCEN--CGIPLHLQCAGKYF-HGKANPTCPN 248

Query: 248 CGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRD 282
           C   W    P++           ++  Q  SH + +T   R+
Sbjct: 249 CNESWPHEIPDLN----------QVSSQGPSHSQTETVRGRN 256

[Close]
BLAST of CmaCh02G011890 vs. ExPASy Swiss-Prot
Match: Q6P881 (Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis OX=8364 GN=nsmce1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.9e-08
Identity = 59/279 (21.15%), Postives = 113/279 (40.50%), Query Frame = 0 

Query: 3   ELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDN-DRQLFNNYLLTMNKALSFAQF 62
           +++  H   +Q L++ G +       L     E    N      ++++  +NK L     
Sbjct: 4   QINESHQRFLQVLMSHGIMESSLVRALHRHCCEVHKVNYMHDNLDDFVGVLNKHLQPLFM 63

Query: 63  ELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNI 122
           ++     + DG  YY LVN V ++ +K+ + Y+  ++  ++  +E I    S  G    I
Sbjct: 64  KIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--ISENGFAPPI 123

Query: 123 AALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAEL----AQDQWLNCTPDGFVNL 182
           + L+L  E Q                  S  +K+K + +L     QD+WL    +G   L
Sbjct: 124 SILNLADELQ------------------SKKMKKKEVEQLLQSFVQDKWL-IGRNGEYTL 183

Query: 183 GVRSFLDLRSWFRT--NDIPS-CEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSK 242
             R  ++L  +      D+   C VC++  ++ +LC N  C + +H  C   +     + 
Sbjct: 184 HTRCIMELEHYILNTYQDVAKICNVCHKIAIQCQLCEN--CGIPLHLQC-AGIYFRGIAN 243

Query: 243 RACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKR 274
             CP+C   W    P++          +++  Q  SH +
Sbjct: 244 PLCPNCKESWPHEIPDL----------SQVSSQGPSHSQ 248

[Close]
BLAST of CmaCh02G011890 vs. TAIR 10
Match: AT5G21140.1 (embryo defective 1379 )

HSP 1 Score: 343.2 bits (879), Expect = 2.2e-94
Identity = 175/316 (55.38%), Postives = 228/316 (72.15%), Query Frame = 0 

Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M  LSW+HHTLIQAL++RGPL+E  FH +FT +T ++P   +++F+ YLL +NK LS+  
Sbjct: 1   MASLSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVH 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FEL+ CR+QYDG+V YG+VNNV+D+QSKLGTKYSVPQIAF+K I+EAIAQD +AQG IS+
Sbjct: 61  FELKACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGIIEAIAQDEAAQGCISS 120

Query: 121 IAALHLQLENQL-GDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180
             AL+++LENQ+  +A S    +PPAFKNFS++ KEKT+ EL +D+WL  T +  + LG+
Sbjct: 121 FDALNIRLENQISSEASSSQQQVPPAFKNFSMTQKEKTLDELVRDKWLCRTRERNIGLGI 180

Query: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPS 240
           RS LDLRSWFR ND+PSCEVCNEAGVKA+LC  EGC VR+H+YCLKK+LS +  KR C  
Sbjct: 181 RSLLDLRSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLSQRDDKR-CSG 240

Query: 241 CGTQW-RSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQ 300
           CG  W  S     E  EE    +   + Q+++ K K+ R  R  DS  NG S  A+ AS 
Sbjct: 241 CGKPWPLSKITKTEAAEEAMNDEEESETQATAPKAKRRRQQR--DSTENGSS-QASLAST 300

Query: 301 PPPDTRRITRSSAHQR 315
              +TRR+TRS  H R
Sbjct: 301 SGANTRRVTRSVGHSR 312

The following BLAST results are available for this feature:
BLAST of CmaCh02G011890 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6PAF42.0e-1021.99Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis OX... [more]
Q6P8816.9e-0821.15Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicali... [more]
BLAST of CmaCh02G011890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G21140.12.2e-9455.38embryo defective 1379 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 8..185
e-value: 9.9E-42
score: 143.0
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 1..312
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 196..254
e-value: 2.8E-11
score: 44.7
NoneNo IPR availableGENE3D3.90.1150.220coord: 5..81
e-value: 3.9E-13
score: 51.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 290..306
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..317
NoneNo IPR availablePANTHERPTHR20973:SF1BNAANNG27900D PROTEINcoord: 1..312
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 84..193
e-value: 2.8E-17
score: 64.7
IPR014857Zinc finger, RING-likePFAMPF08746zf-RING-likecoord: 197..240
e-value: 5.6E-9
score: 36.2
IPR014857Zinc finger, RING-likeCDDcd16493RING-CH-C4HC3_NSE1coord: 196..242
e-value: 3.30328E-14
score: 63.9881

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G011890.1CmaCh02G011890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
cellular_component GO:0005634 nucleus
cellular_component GO:0030915 Smc5-Smc6 complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016740 transferase activity