CmaCh02G011530 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G011530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionATP-dependent Clp protease proteolytic subunit
LocationCma_Chr02: 6813676 .. 6814108 (-)
RNA-Seq ExpressionCmaCh02G011530
SyntenyCmaCh02G011530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCGAAAGAGTAGTATGAGATAAAAGGCATTTGCGATTTTAGCTGATTTATCGGAGGCCTCTTTCAGCGTCACAAACTTTTTTGTTTTCACGACGGAAGACTCTTAACAATATTTCTGTTATGAAAGACTACGAAATATTTTTTTTTAAGGAAAAAAAAAAGAAACTTTGGGNACAAAGATTACTTTTTTTAGGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGTCGGAATTGCTATTTATGATACTATGCAATTTGTGAAACCAGATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGATCGGAGGAGAAATTACCAAA

mRNA sequence

ATGTATCGAAAGAGTAGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGTCGGAATTGCTATTTATGATACTATGCAATTTGTGAAACCAGATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGATCGGAGGAGAAATTACCAAA

Coding sequence (CDS)

ATGTATCGAAAGAGTAGCCAAGACGTTGAGAGCGAGATCTCGAATCAAATTATTGGTCTTATGATATATCTCAGTATAGAGGATGAGAACAAAGATCAGTATTTATTTATAAACTCTCCCGGTGGAGGGGTAATAGTCGGAATTGCTATTTATGATACTATGCAATTTGTGAAACCAGATATACATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGATCGGAGGAGAAATTACCAAA

Protein sequence

MYRKSSQDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICMGLAASMGSFILIGGEITK
Homology
[Close]
BLAST of CmaCh02G011530 vs. ExPASy Swiss-Prot
Match: Q3C1K4 (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris OX=4096 GN=clpP PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-33
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 7   QDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICM 66
           Q+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICM
Sbjct: 37  QEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICM 96

Query: 67  GLAASMGSFILIGGEITK 85
           GLAASMGSFIL+GGEITK
Sbjct: 97  GLAASMGSFILVGGEITK 114

[Close]
BLAST of CmaCh02G011530 vs. ExPASy Swiss-Prot
Match: Q33C07 (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis OX=4098 GN=clpP PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-33
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 7   QDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICM 66
           Q+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICM
Sbjct: 37  QEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICM 96

Query: 67  GLAASMGSFILIGGEITK 85
           GLAASMGSFIL+GGEITK
Sbjct: 97  GLAASMGSFILVGGEITK 114

[Close]
BLAST of CmaCh02G011530 vs. ExPASy Swiss-Prot
Match: P12210 (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum OX=4097 GN=clpP PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-33
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 7   QDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICM 66
           Q+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICM
Sbjct: 37  QEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICM 96

Query: 67  GLAASMGSFILIGGEITK 85
           GLAASMGSFIL+GGEITK
Sbjct: 97  GLAASMGSFILVGGEITK 114

[Close]
BLAST of CmaCh02G011530 vs. ExPASy Swiss-Prot
Match: Q09FT6 (ATP-dependent Clp protease proteolytic subunit OS=Nandina domestica OX=41776 GN=clpP PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-32
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 7   QDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICM 66
           Q+V+SEISNQ+IGLM+YLSIEDE KD YLFINSPGG VI G+AIYDTMQFV PD+HTICM
Sbjct: 37  QEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVPPDVHTICM 96

Query: 67  GLAASMGSFILIGGEITK 85
           GLAASMGSFIL+GGEITK
Sbjct: 97  GLAASMGSFILVGGEITK 114

[Close]
BLAST of CmaCh02G011530 vs. ExPASy Swiss-Prot
Match: Q9M3K5 (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea OX=3562 GN=clpP PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-32
Identity = 65/78 (83.33%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 7   QDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICM 66
           Q+V+SEISNQ+IGLM+YLSIED+ KD YLFINSPGG VI G+AIYDTMQFV+PD+HTICM
Sbjct: 37  QEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTICM 96

Query: 67  GLAASMGSFILIGGEITK 85
           GLAASMGSFIL+GGEITK
Sbjct: 97  GLAASMGSFILVGGEITK 114

[Close]
BLAST of CmaCh02G011530 vs. TAIR 10
Match: ATCG00670.1 (plastid-encoded CLP P )

HSP 1 Score: 124.0 bits (310), Expect = 5.6e-29
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 7   QDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICM 66
           Q+V++EISNQ+I LMIYLSIE + KD YLFINSPGG VI G+AIYDTMQFV+PD+ TICM
Sbjct: 37  QEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICM 96

Query: 67  GLAASMGSFILIGGEITK 85
           GLAAS+ SFIL+GG ITK
Sbjct: 97  GLAASIASFILVGGAITK 114

[Close]
BLAST of CmaCh02G011530 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-16
Identity = 34/72 (47.22%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 9   VESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICMGL 68
           V+ +++N I+  ++YL   D  KD  +++NSPGG V  G+AI+DTM+ ++PD+ T+C+GL
Sbjct: 131 VDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGL 190

Query: 69  AASMGSFILIGG 81
           AASMG+F+L  G
Sbjct: 191 AASMGAFLLSAG 202

[Close]
BLAST of CmaCh02G011530 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 )

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-14
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 0 

Query: 9   VESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICMGL 68
           V+   ++ +I  ++ L  ED  +D  LFINSPGG +  G+ IYD M+  K D+ T+C+GL
Sbjct: 102 VDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGL 161

Query: 69  AASMGSFILIGG 81
           AASMG+F+L  G
Sbjct: 162 AASMGAFLLASG 173

[Close]
BLAST of CmaCh02G011530 vs. TAIR 10
Match: AT1G12410.1 (CLP protease proteolytic subunit 2 )

HSP 1 Score: 73.6 bits (179), Expect = 8.7e-14
Identity = 31/75 (41.33%), Postives = 51/75 (68.00%), Query Frame = 0 

Query: 7   QDVESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICM 66
           Q+++ E SNQI+  M+YL   D+++  Y+++N PGG +   +AIYDTM+ +K  + T C+
Sbjct: 104 QNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCV 163

Query: 67  GLAASMGSFILIGGE 82
           GLA ++  F+L  GE
Sbjct: 164 GLAYNLAGFLLAAGE 178

[Close]
BLAST of CmaCh02G011530 vs. TAIR 10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7 )

HSP 1 Score: 73.6 bits (179), Expect = 8.7e-14
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 0 

Query: 9   VESEISNQIIGLMIYLSIEDENKDQYLFINSPGGGVIVGIAIYDTMQFVKPDIHTICMGL 68
           +  + S+ ++  ++YL  E+ +K  ++++NSPGG V  G+AIYDTMQ+++  I TIC+G 
Sbjct: 65  INDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQ 124

Query: 69  AASMGSFILIGG 81
           AASM S +L  G
Sbjct: 125 AASMASLLLAAG 136

The following BLAST results are available for this feature:
BLAST of CmaCh02G011530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3C1K46.3e-3384.62ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris OX=4096 G... [more]
Q33C076.3e-3384.62ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis OX=4... [more]
P122106.3e-3384.62ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum OX=4097 GN=c... [more]
Q09FT61.4e-3284.62ATP-dependent Clp protease proteolytic subunit OS=Nandina domestica OX=41776 GN=... [more]
Q9M3K51.4e-3283.33ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea OX=3562 GN=c... [more]
BLAST of CmaCh02G011530 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00670.15.6e-2975.64plastid-encoded CLP P [more]
AT1G02560.11.1e-1647.22nuclear encoded CLP protease 5 [more]
AT1G66670.15.1e-1445.83CLP protease proteolytic subunit 3 [more]
AT1G12410.18.7e-1441.33CLP protease proteolytic subunit 2 [more]
AT5G23140.18.7e-1443.06nuclear-encoded CLP protease P7 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001907ATP-dependent Clp protease proteolytic subunitPRINTSPR00127CLPPROTEASEPcoord: 32..52
score: 57.14
coord: 63..80
score: 66.39
IPR001907ATP-dependent Clp protease proteolytic subunitCDDcd07017S14_ClpP_2coord: 6..84
e-value: 3.11599E-38
score: 123.321
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPFAMPF00574CLP_proteasecoord: 7..83
e-value: 5.1E-28
score: 98.2
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPANTHERPTHR10381ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNITcoord: 2..84
NoneNo IPR availableGENE3D3.90.226.10coord: 4..84
e-value: 1.7E-26
score: 95.0
NoneNo IPR availablePANTHERPTHR10381:SF15CHLOROPLASTIC ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1coord: 2..84
IPR018215ClpP, Ser active sitePROSITEPS00381CLP_PROTEASE_SERcoord: 63..74
IPR029045ClpP/crotonase-like domain superfamilySUPERFAMILY52096ClpP/crotonasecoord: 7..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G011530.1CmaCh02G011530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009526 plastid envelope
molecular_function GO:0004176 ATP-dependent peptidase activity
molecular_function GO:0004252 serine-type endopeptidase activity