CmaCh02G011140 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G011140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCCH domain-containing protein 13-like isoform X4
Location	Cma_Chr02: 6609604 .. 6616629 (+)
RNA-Seq Expression	CmaCh02G011140
Synteny	CmaCh02G011140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGAAGTTCGAGGCACAAATCTACTAGACATGGGTTGAAGGATGCTAGGGAATCCTCAGACTCGGAAAATGATTCCAGTCTGAGGGATCGGAAGGGCAGAGAGAGTGGGAGTAGGGTATCGAAGGACACTGCTTCTAGTGAGAAGCGCAGATTCGATTCCAAGGATACAAAAGACTTCTACGGCTCTGAGAATCTGGAAGCGGAAGAGCACGGACATTCGAAGCGCCGTAAGGAGAGGTATGATGAGGGAACGACTGATAGGTGGAATGGGGGAAGCGATGAGGAGCATGGTGTTCCTTCCAAAAAGTCAAAACCGTCGGTGGATTCAAAGAGCAAGAGGAGGGACGAGAGTGTTGTATTGCAGGGTGATGGCGAAGAACTCAAGAAGAATAGTGGAAAGGGCGAGGGAAGGCACCGCGAGTCGAGCCGAAAGGAGGGTCGGTATGGTGGAGGGGAAAGGGAAAGGGAGAGGGATAGGGAGAAGGAAAGAAAAGGCAGAGAAGGTAGAAGTGACAGGGTGGTTGCAAGCGAAGAACACCGAGTTGAAAAGCAAGTGGAAAGGAGCACAGGTCAGACATTGAATTATTAGTTGGTTTTATCATCGTTCTGCAACCCATGTATCCATTTCTCTGTACAAATTCAGCATATCAGGGCTTTCTTATTGAACATGCTCATTATCTTTACTGATTAGTATCCACATTTCTCTTGAGTTTCATTATTAGGTTTAACGGGTTGATTTGCATGGTTCTGTAGTGTTCCCTGTTGCGTTGGAGATGTTGGTCATCTGGTTCCATTTACTTATATGGTTGGACTATATACTTGTATCTTTTGCTTTTCATAATCGGGTAGCATGCTTTTCTTTTAAAGATTCATTTTATCAAAAGATATGACGCAGGGCCACTTTGGTGAGCTTGAAAATGCAATATTAACGTAACAGTTAGCTGCCCACGAAGATCTTAGACTAATCGTTGGAATTTCTCCATGTTACAAATGTAAAACTTTTCAAGTACCATTTTTATCATCATAGTCACTCTCTGCTTGAAGATGTTCTGTATGAAATGATATGTGGGTTAACTGTAATTATCGAGGATAGTGGAGCTTGTCTTTTTGGGGTGCCATATTTTATGCTATACATGATAGTTCTTTTTGGGTACTAAAGGATACAATGGTGGTAACCCCTTAGCCCTCGATGTGTTTTGTCTTATCTCAACGCTAATACAAATTGTTATTCTATAAAAATTTGGTGGTAATTATTTCATTTCTTTCTTGTTGTTGTTATTGTTATTATTGTTTGTGTGTATGTATGCATGAAATTGAAAGGATTATATGATTATAATAAGATCCTATTATTGACTGATTTAGTGAAGTATGAATGTAAAATTTGATTGAGTGTGTGGTCTGGTGAGATTCTGCGTGAAGACTTTCACACCATTCTCCGAACTTCAAGGCAGAGATTCCAAAGGACTACCAAACTCCTCTTGCCTTGTCTGTGTTTCCATGACAAAGAAGTTCTCTGTCTGGTTGAAATGGATTGATTTTTCTCATGCATCAAACTTGATGTAGAAAACCAATCGGCATGGAAGGATTGCCAAGTGATCACAACCATTCTACTCCAATCAATCAATCTCCTCATATCTACTTCTACCAACGATCACAACCTTTGTATAAGATCAATCACATTTCAAACTTCAAGGCTAGGGGGATACATATTAAAGAGAAAAAAAAAAAGCTCCTTTACCTCTTTAGGTCCTTCGCTACTGGTATGACAATATTTTACATTTTTCAACTCCTTTCACGGCCTTGTTCTCTTGTAGAGGACCTTTCTCATTCAAGATCTTCTTCATCCAAAGGGTGTCCTCTTCCTGTCTTGTTCTCCAGGAGTAGCCAAGGTTTTAGAGAGTGAGAAGGAGAAGTAGGTCAGAAAAGCAATCTACAACCTAAACTGCAAGCACTTGATTAAAGGGAATTTCGAACTGTCTGGATTTACTTCTCTACTCTTCCTTTTATTTGGTTGGGGTTGTTGAACTCTGATTTTATTTGATCAATTGTCAGTTTGAACATTTTACAAATCTTAGACGTTTATCAGATTTGATTGGAATATATGCATGATTTGCAAAATTGGTTAATCTTAGGAATTGGATTGTACTAGCTTTTGGAGAAGTATTTTTTGGATTTTATTTCAACATGTACGAAATGCATTTTAATTTTGTGCAACATGTGGGTCTTAAACATTAATTGATCAAATTTTCTTCTACAATTTGGTTTACTCTCCATATAAGATAACTAATGAATCCCTTCTCTCTCTCTCTCTCTCTCTCCTGTTCTCTGACACGCATGTTCATTCACTCACATTCTCTTTACTGAGTGTTATGTTAGACAGAGCTGATTGTGCCTGTTGGTATCATTTGCATGTAGAACGTATGGATTTGTTTGGGGCTATATTGAGTGTTATGTTAGCCAGAGTATTTTGATTCTATGGCTATTAGGCGACTTGGAGTCATGGTCATACTAGATTTGAATTATGAATTTATTCATCTTTCATTTTTTGAAAATTTAGTTGAAATAGTACCCTATAAGTCATCTTGTTTGTGTTTATATTATGTGATACACTTTCTTTAAATGATGTATTTTTGGCGCTAGTTTTATCAATGAAACTGCAGTTTCTTACCAAAGGAAAAAAAAAAAAAAAAAATTGGTGCTGGTTTTTGTACTTGGGAAAGTATTAACTATTAATTAATTTTTTTCCCATGGTCTCATCACTAGATAAAATGTGATCCACTTGAACAATACCATTGTATCTTGGACTGAGTATTAGTTTACAATTGTTTTTATCATTTTGTGGGAACTTGTGTAAATATGTTAGTTCGTGACATATTGCACTTTCAATGCGCAGAGAATGTGTTGCATAGCCCTGGATTAGAGAATCACCTGGAGGTACGAGTAAGGAAGAGAGCTGGTTCTTTTGATGGGGATAAACATAAAGATGATATAGGAGATGTGGAACATAGACAGCTATCCACAAAGAATGATGTTGTGAAGGATGGAAGACGAAAGAATGAGAAGCATAAGGATGAGAGAAATAGGGACAAGCACCGGGAAGATACTGATAGGGATGGCAAGGAAAGATATGAGCAACCTGTAAAAGATCACATCAGCAGGTCAAATGGCAGAGATTTGAGAGATGAGAAGGATGCTATGGATGTGCACCATAAGAGAAACAAGCCTCAAGATAGTGATCTTGATCGAGAGGTAACCAAAGCCAAACGTGAGGGCGATCTAGATGCCATGCGTGATCAAGATCATGATCGCCACCATGTGTATGAACGTGATCATGATCAAGAGAGTAGGCGTAGACGCGATCGCGATCGCGACCGTGATCGGGATGGGAGACAGGATCGTAGTCGGAGCCGTGCTCGTGACCGTTACTCTGATTATGAATGTGACGTTGACCGTGATGGATCACATCTTGAGGATCAGTACACAAAATATGTCGATAGTAGGGGAAAGAAAAGATCTCCACATGATCATGATGATTCTGTTGATGCTAGATCTAAAAGTTTGAAGAATAGTCACCACCATGCAAATGAAGAAAAGAAATCTTTAAGCAGTGATAAAGTGGACTCAGACGTTGAGAGAGGAAAATCTCAATCACAATCTCGTCATGCTGATGTTAGTTTAAGCAGCCATAGACGAAAGAGTTCACCCAGTTCTCTGTCACGTGGTGGCATAAATGAATACAGGTTGCATCTCTTTTTCCTTATTGTAACACATAGTATATGGTGTGTTTGAAGTCCTTGTTGCTGTGAGAAATTTTGTTCAATGATGTTCTTTTAATTGGTTGGGATGGCCTTTTTAATTTTCGAACATATTATCTGCTCTGCTCTTCTCTTGCTGGTTTCTATACTATATAAATGCTTGTAAATCATCCAAACAAAGCGAAGCTTTTGTCTTTTCTATAAAGGCATCAGGGCACACTAGTTGCATCAGAGAAGGAGCTTCAGAGACCAGTAGTAGTTGAAAAATTTTCCGTTCTCATTATGTAGTAAACCACAAAAAATCTCTTTGATTCTTTTCTTGAAAGGGGTTTTTACCACATCTTCCCGCGTCATTTTATTCTTGATCTTGGTTATTATTGAGGATGGGGAAGGGAGGATTCTTTGTCCATGCCATTTTGTATCTTAAATCTTGTGCAGTAATTTTTTCTCATTCTCTCTTTTCTGGAATAATTTGATAGGAAATGATGCAACCATTGATAGCGATTTTGTTATGCTTGTCCCTATTATTCAACTGCTTGACTATGTCTCAACCATAAATTTTCACTTATTAATTTGATCAGAAGGCAGGCAAGAAGATTTATTAGATTTTATTTAGTTTGTGTGTTGCAAGAATTATTCAAGCAATGGGATGTTCATGTATTATTCATTTTTTTCCTTCTAGGCATCAAGACCAGGAAGATTTGAGAGACCGATACCCAAAAAAGGAAGAGAGGTCCAAGTCCATTTCTACTAGAGATAAAGGTGTTCTGTCAGGAGTACAAGATAAGAGTTCCAAGTACACTTATTCGGATAAAACTGGTGAAACAGATGGTGGCAATGCTATTGAACTGTCACGAGATAGGTCTTTAAATTGTAAGGTATCTATCAGTATTGAGCTTGTCAAAAAGATCTCTTTCATTGGTGAATGACATCGTAAATGTTAACAATTCTTGTATGTTTTTCAGAATGTTGACATTGAAGAAAGTGGACGAAGGCACAACACTTCTATTGATGCCAAAGACCTCTCCTCTAATAAGGATAGGCATAGCTGGGAATTACAAGGAGAGAAGCTTCCACCTCCGATGGATGGTTCGTCTCTGGCAGAGCCCTATTTTAGCAAAGGTAGTCAGAGCAATCCATCACCATTCCATCCACGCCCTGGTTTTAGGGGTGGAATTGACATTCCTTTTGATGGTTCACTAGAAGATGATGGCAGACTCAATTCTAATAGCCGTTTCAGAAGGGGCAATGATCCGGGTAGAATACATGGAAACACTTGGAGAGGCATTCCAAACTGGACAGCACCACTACCAAATGGCTTTATCCCTTTCCAGCATGGACCTCCTCATGGAAATTTCCAATCAATTATGCCACAGTTTCCTGCACCACCTTTGTTTGGTATCAGGCCTCCACTTGAAATCAATCACTCTGGAATTCCTTATCGGCTGCCTGATGCTGAAAGATTTCCCAGTCACATGCATCCACTAGGGTGGCAGAATATGTTGGATGGTTCAAGCCCTTCTCACTTACATGGATGGGAAGGAAATAACGGCATGTTTAGGTATGAATCTCACATTTATAGCGGAGCGGAATGGGATGAGAACAGACAGATGGTGAATGGTCGAGGATGGGAGTCCAAAGCTGAAATGTGGAAGAGACAGAGTGGTTCCCTGAAAAGGGAATTACCTTCCCATTTTCAGAAGGATGAGCGTTCGGTGCAAGATCCTGTTGATGATGTATCAAATAGGGAGGTGTGTGATGAGAGTGCTGACACTATTTTGACAAAAACTTCTGAAATAAGGCCTAAGATGCCTTCTGTAAAGGAAAGCCCCAACACTTCTGAACTACTCTCTGAAACACCAACTCCTCTTGAACAGTCGATGGATGATAATTCTAAACTTAGTTGTTCTTATCTTTCTAAGCTTAAGATTTCCACAGAACTTTCATATCCTGATTTGTACCACCAGTGTCAGAGATTAATGGATATTGAGCACTGCGTGACTGCAGATGAGGAAACTGTTGCTTACATAGTACTTGAGGTAAAGTCCTGGACAACATATGTTTGTTTATGCCTTTCTCATAATTATAAGAATTTAATTATTAGTCATGACTTACATCATATTCTTGACAGGGTGGCATGGGAGCAGTGTCCATCTCTTCGAATAGTGCGCATCAGTCATTTTTCCATCTAAACAAGAGCTCGGTTTTTCAGGTATAATACGTGGCTGCTTCAAGTGTAGGAAATTGAAGTTGTCTATGGTGCTTTAGTATTCATATTAGGTTTTAGATATTTGATACTCTCGGGACTGCAAGATGGGTGCAATTTGGAATGCTCATTTTTCTCACGTTATAAAATATTAAAGAACTATGAAGCTGTTGTTAGTCTTAGCGTATGATCTAGGGATTTCGATGGCCCTTTCTTTTCTCTCTTGACAAAATATGGGGAAAAAAACCTGTGATGACTATGCTACTTTATGTTCGTAAAACATAGACTTAGATTCTTGGCCAAGAATGATGCTCAAAAGTTTATATAGCTTGTAATAACTGGTATAAATATTTTGCAGCACGCAATGAACTTGTACAAAAAGCAGAGAATGGAAATGAAGGATATGCGAGCTATTTCTGGGGAAAAGGAATCCTCAGAAAGGACACTTCAAGAGAAGGGGATGCAAGTTGATTCTGAGGGAATGCCTTCCTCTGAGAGGAGACTTGAAGAGAACGGCTTCAATTTCAATAGTGAAGAAGTTAAGGCTCCTGTTTCAACTGTTGGTGAGGAAATAGCACAGGCACCTATCATAACCGCGAGCAATTCAACCGAAGTTGAGGCGACTGATGCATTGGTGGAATTGGAGGATTTGGCTTCAACAACTGCCAGTCAAGTGGTCAAGTGTCCTGAAAACCCAGAGGAGTCATTACCAGTTACCAATTCAACCGAAGTGGTTACGATGGCTTTGGAGCAGCAGCAGGCAAACTTAGACGCCAAAAAGGATACCATTGCTGTACCAGTTGACAACATACCAGTCAACGACACCGACAAACTGAGTAACATCGAGATGAAGGGGATTGTGAAGGGCAAAGATTCAACGCGATGTGGAGTTGGTAAATCTTGTATTGAGAATGCAACTTTATCTTTTGGAGATGAAATAGGGGAGAGGTGTGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGTTAATGGCTGCTATGTCAATTGGGTCTGAGGCTTTAATTTTGAGTCAGATGCATCATTCTCCTGAAAGTACACATTGA

mRNA sequence

ATGCCGAGAAGTTCGAGGCACAAATCTACTAGACATGGGTTGAAGGATGCTAGGGAATCCTCAGACTCGGAAAATGATTCCAGTCTGAGGGATCGGAAGGGCAGAGAGAGTGGGAGTAGGGTATCGAAGGACACTGCTTCTAGTGAGAAGCGCAGATTCGATTCCAAGGATACAAAAGACTTCTACGGCTCTGAGAATCTGGAAGCGGAAGAGCACGGACATTCGAAGCGCCGTAAGGAGAGGTATGATGAGGGAACGACTGATAGGTGGAATGGGGGAAGCGATGAGGAGCATGGTGTTCCTTCCAAAAAGTCAAAACCGTCGGTGGATTCAAAGAGCAAGAGGAGGGACGAGAGTGTTGTATTGCAGGGTGATGGCGAAGAACTCAAGAAGAATAGTGGAAAGGGCGAGGGAAGGCACCGCGAGTCGAGCCGAAAGGAGGGTCGGTATGGTGGAGGGGAAAGGGAAAGGGAGAGGGATAGGGAGAAGGAAAGAAAAGGCAGAGAAGGTAGAAGTGACAGGGTGGTTGCAAGCGAAGAACACCGAGTTGAAAAGCAAGTGGAAAGGAGCACAGAGGACCTTTCTCATTCAAGATCTTCTTCATCCAAAGGGTGTCCTCTTCCTGTCTTGTTCTCCAGGAGTAGCCAAGAGAATGTGTTGCATAGCCCTGGATTAGAGAATCACCTGGAGGTACGAGTAAGGAAGAGAGCTGGTTCTTTTGATGGGGATAAACATAAAGATGATATAGGAGATGTGGAACATAGACAGCTATCCACAAAGAATGATGTTGTGAAGGATGGAAGACGAAAGAATGAGAAGCATAAGGATGAGAGAAATAGGGACAAGCACCGGGAAGATACTGATAGGGATGGCAAGGAAAGATATGAGCAACCTGTAAAAGATCACATCAGCAGGTCAAATGGCAGAGATTTGAGAGATGAGAAGGATGCTATGGATGTGCACCATAAGAGAAACAAGCCTCAAGATAGTGATCTTGATCGAGAGGTAACCAAAGCCAAACGTGAGGGCGATCTAGATGCCATGCGTGATCAAGATCATGATCGCCACCATGTGTATGAACGTGATCATGATCAAGAGAGTAGGCGTAGACGCGATCGCGATCGCGACCGTGATCGGGATGGGAGACAGGATCGTAGTCGGAGCCGTGCTCGTGACCGTTACTCTGATTATGAATGTGACGTTGACCGTGATGGATCACATCTTGAGGATCAGTACACAAAATATGTCGATAGTAGGGGAAAGAAAAGATCTCCACATGATCATGATGATTCTGTTGATGCTAGATCTAAAAGTTTGAAGAATAGTCACCACCATGCAAATGAAGAAAAGAAATCTTTAAGCAGTGATAAAGTGGACTCAGACGTTGAGAGAGGAAAATCTCAATCACAATCTCGTCATGCTGATGTTAGTTTAAGCAGCCATAGACGAAAGAGTTCACCCAGTTCTCTGTCACGTGGTGGCATAAATGAATACAGGCATCAAGACCAGGAAGATTTGAGAGACCGATACCCAAAAAAGGAAGAGAGGTCCAAGTCCATTTCTACTAGAGATAAAGGTGTTCTGTCAGGAGTACAAGATAAGAGTTCCAAGTACACTTATTCGGATAAAACTGGTGAAACAGATGGTGGCAATGCTATTGAACTGTCACGAGATAGGTCTTTAAATTGTAAGAATGTTGACATTGAAGAAAGTGGACGAAGGCACAACACTTCTATTGATGCCAAAGACCTCTCCTCTAATAAGGATAGGCATAGCTGGGAATTACAAGGAGAGAAGCTTCCACCTCCGATGGATGGTTCGTCTCTGGCAGAGCCCTATTTTAGCAAAGGTAGTCAGAGCAATCCATCACCATTCCATCCACGCCCTGGTTTTAGGGGTGGAATTGACATTCCTTTTGATGGTTCACTAGAAGATGATGGCAGACTCAATTCTAATAGCCGTTTCAGAAGGGGCAATGATCCGGGTAGAATACATGGAAACACTTGGAGAGGCATTCCAAACTGGACAGCACCACTACCAAATGGCTTTATCCCTTTCCAGCATGGACCTCCTCATGGAAATTTCCAATCAATTATGCCACAGTTTCCTGCACCACCTTTGTTTGGTATCAGGCCTCCACTTGAAATCAATCACTCTGGAATTCCTTATCGGCTGCCTGATGCTGAAAGATTTCCCAGTCACATGCATCCACTAGGGTGGCAGAATATGTTGGATGGTTCAAGCCCTTCTCACTTACATGGATGGGAAGGAAATAACGGCATGTTTAGGTATGAATCTCACATTTATAGCGGAGCGGAATGGGATGAGAACAGACAGATGGTGAATGGTCGAGGATGGGAGTCCAAAGCTGAAATGTGGAAGAGACAGAGTGGTTCCCTGAAAAGGGAATTACCTTCCCATTTTCAGAAGGATGAGCGTTCGGTGCAAGATCCTGTTGATGATGTATCAAATAGGGAGGTGTGTGATGAGAGTGCTGACACTATTTTGACAAAAACTTCTGAAATAAGGCCTAAGATGCCTTCTGTAAAGGAAAGCCCCAACACTTCTGAACTACTCTCTGAAACACCAACTCCTCTTGAACAGTCGATGGATGATAATTCTAAACTTAGTTGTTCTTATCTTTCTAAGCTTAAGATTTCCACAGAACTTTCATATCCTGATTTGTACCACCAGTGTCAGAGATTAATGGATATTGAGCACTGCGTGACTGCAGATGAGGAAACTGTTGCTTACATAGTACTTGAGGGTGGCATGGGAGCAGTGTCCATCTCTTCGAATAGTGCGCATCAGTCATTTTTCCATCTAAACAAGAGCTCGGTTTTTCAGCACGCAATGAACTTGTACAAAAAGCAGAGAATGGAAATGAAGGATATGCGAGCTATTTCTGGGGAAAAGGAATCCTCAGAAAGGACACTTCAAGAGAAGGGGATGCAAGTTGATTCTGAGGGAATGCCTTCCTCTGAGAGGAGACTTGAAGAGAACGGCTTCAATTTCAATAGTGAAGAAGTTAAGGCTCCTGTTTCAACTGTTGGTGAGGAAATAGCACAGGCACCTATCATAACCGCGAGCAATTCAACCGAAGTTGAGGCGACTGATGCATTGGTGGAATTGGAGGATTTGGCTTCAACAACTGCCAGTCAAGTGGTCAAGTGTCCTGAAAACCCAGAGGAGTCATTACCAGTTACCAATTCAACCGAAGTGGTTACGATGGCTTTGGAGCAGCAGCAGGCAAACTTAGACGCCAAAAAGGATACCATTGCTGTACCAGTTGACAACATACCAGTCAACGACACCGACAAACTGAGTAACATCGAGATGAAGGGGATTGTGAAGGGCAAAGATTCAACGCGATGTGGAGTTGGTAAATCTTGTATTGAGAATGCAACTTTATCTTTTGGAGATGAAATAGGGGAGAGGTGTGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGTTAATGGCTGCTATGTCAATTGGGTCTGAGGCTTTAATTTTGAGTCAGATGCATCATTCTCCTGAAAGTACACATTGA

Coding sequence (CDS)

ATGCCGAGAAGTTCGAGGCACAAATCTACTAGACATGGGTTGAAGGATGCTAGGGAATCCTCAGACTCGGAAAATGATTCCAGTCTGAGGGATCGGAAGGGCAGAGAGAGTGGGAGTAGGGTATCGAAGGACACTGCTTCTAGTGAGAAGCGCAGATTCGATTCCAAGGATACAAAAGACTTCTACGGCTCTGAGAATCTGGAAGCGGAAGAGCACGGACATTCGAAGCGCCGTAAGGAGAGGTATGATGAGGGAACGACTGATAGGTGGAATGGGGGAAGCGATGAGGAGCATGGTGTTCCTTCCAAAAAGTCAAAACCGTCGGTGGATTCAAAGAGCAAGAGGAGGGACGAGAGTGTTGTATTGCAGGGTGATGGCGAAGAACTCAAGAAGAATAGTGGAAAGGGCGAGGGAAGGCACCGCGAGTCGAGCCGAAAGGAGGGTCGGTATGGTGGAGGGGAAAGGGAAAGGGAGAGGGATAGGGAGAAGGAAAGAAAAGGCAGAGAAGGTAGAAGTGACAGGGTGGTTGCAAGCGAAGAACACCGAGTTGAAAAGCAAGTGGAAAGGAGCACAGAGGACCTTTCTCATTCAAGATCTTCTTCATCCAAAGGGTGTCCTCTTCCTGTCTTGTTCTCCAGGAGTAGCCAAGAGAATGTGTTGCATAGCCCTGGATTAGAGAATCACCTGGAGGTACGAGTAAGGAAGAGAGCTGGTTCTTTTGATGGGGATAAACATAAAGATGATATAGGAGATGTGGAACATAGACAGCTATCCACAAAGAATGATGTTGTGAAGGATGGAAGACGAAAGAATGAGAAGCATAAGGATGAGAGAAATAGGGACAAGCACCGGGAAGATACTGATAGGGATGGCAAGGAAAGATATGAGCAACCTGTAAAAGATCACATCAGCAGGTCAAATGGCAGAGATTTGAGAGATGAGAAGGATGCTATGGATGTGCACCATAAGAGAAACAAGCCTCAAGATAGTGATCTTGATCGAGAGGTAACCAAAGCCAAACGTGAGGGCGATCTAGATGCCATGCGTGATCAAGATCATGATCGCCACCATGTGTATGAACGTGATCATGATCAAGAGAGTAGGCGTAGACGCGATCGCGATCGCGACCGTGATCGGGATGGGAGACAGGATCGTAGTCGGAGCCGTGCTCGTGACCGTTACTCTGATTATGAATGTGACGTTGACCGTGATGGATCACATCTTGAGGATCAGTACACAAAATATGTCGATAGTAGGGGAAAGAAAAGATCTCCACATGATCATGATGATTCTGTTGATGCTAGATCTAAAAGTTTGAAGAATAGTCACCACCATGCAAATGAAGAAAAGAAATCTTTAAGCAGTGATAAAGTGGACTCAGACGTTGAGAGAGGAAAATCTCAATCACAATCTCGTCATGCTGATGTTAGTTTAAGCAGCCATAGACGAAAGAGTTCACCCAGTTCTCTGTCACGTGGTGGCATAAATGAATACAGGCATCAAGACCAGGAAGATTTGAGAGACCGATACCCAAAAAAGGAAGAGAGGTCCAAGTCCATTTCTACTAGAGATAAAGGTGTTCTGTCAGGAGTACAAGATAAGAGTTCCAAGTACACTTATTCGGATAAAACTGGTGAAACAGATGGTGGCAATGCTATTGAACTGTCACGAGATAGGTCTTTAAATTGTAAGAATGTTGACATTGAAGAAAGTGGACGAAGGCACAACACTTCTATTGATGCCAAAGACCTCTCCTCTAATAAGGATAGGCATAGCTGGGAATTACAAGGAGAGAAGCTTCCACCTCCGATGGATGGTTCGTCTCTGGCAGAGCCCTATTTTAGCAAAGGTAGTCAGAGCAATCCATCACCATTCCATCCACGCCCTGGTTTTAGGGGTGGAATTGACATTCCTTTTGATGGTTCACTAGAAGATGATGGCAGACTCAATTCTAATAGCCGTTTCAGAAGGGGCAATGATCCGGGTAGAATACATGGAAACACTTGGAGAGGCATTCCAAACTGGACAGCACCACTACCAAATGGCTTTATCCCTTTCCAGCATGGACCTCCTCATGGAAATTTCCAATCAATTATGCCACAGTTTCCTGCACCACCTTTGTTTGGTATCAGGCCTCCACTTGAAATCAATCACTCTGGAATTCCTTATCGGCTGCCTGATGCTGAAAGATTTCCCAGTCACATGCATCCACTAGGGTGGCAGAATATGTTGGATGGTTCAAGCCCTTCTCACTTACATGGATGGGAAGGAAATAACGGCATGTTTAGGTATGAATCTCACATTTATAGCGGAGCGGAATGGGATGAGAACAGACAGATGGTGAATGGTCGAGGATGGGAGTCCAAAGCTGAAATGTGGAAGAGACAGAGTGGTTCCCTGAAAAGGGAATTACCTTCCCATTTTCAGAAGGATGAGCGTTCGGTGCAAGATCCTGTTGATGATGTATCAAATAGGGAGGTGTGTGATGAGAGTGCTGACACTATTTTGACAAAAACTTCTGAAATAAGGCCTAAGATGCCTTCTGTAAAGGAAAGCCCCAACACTTCTGAACTACTCTCTGAAACACCAACTCCTCTTGAACAGTCGATGGATGATAATTCTAAACTTAGTTGTTCTTATCTTTCTAAGCTTAAGATTTCCACAGAACTTTCATATCCTGATTTGTACCACCAGTGTCAGAGATTAATGGATATTGAGCACTGCGTGACTGCAGATGAGGAAACTGTTGCTTACATAGTACTTGAGGGTGGCATGGGAGCAGTGTCCATCTCTTCGAATAGTGCGCATCAGTCATTTTTCCATCTAAACAAGAGCTCGGTTTTTCAGCACGCAATGAACTTGTACAAAAAGCAGAGAATGGAAATGAAGGATATGCGAGCTATTTCTGGGGAAAAGGAATCCTCAGAAAGGACACTTCAAGAGAAGGGGATGCAAGTTGATTCTGAGGGAATGCCTTCCTCTGAGAGGAGACTTGAAGAGAACGGCTTCAATTTCAATAGTGAAGAAGTTAAGGCTCCTGTTTCAACTGTTGGTGAGGAAATAGCACAGGCACCTATCATAACCGCGAGCAATTCAACCGAAGTTGAGGCGACTGATGCATTGGTGGAATTGGAGGATTTGGCTTCAACAACTGCCAGTCAAGTGGTCAAGTGTCCTGAAAACCCAGAGGAGTCATTACCAGTTACCAATTCAACCGAAGTGGTTACGATGGCTTTGGAGCAGCAGCAGGCAAACTTAGACGCCAAAAAGGATACCATTGCTGTACCAGTTGACAACATACCAGTCAACGACACCGACAAACTGAGTAACATCGAGATGAAGGGGATTGTGAAGGGCAAAGATTCAACGCGATGTGGAGTTGGTAAATCTTGTATTGAGAATGCAACTTTATCTTTTGGAGATGAAATAGGGGAGAGGTGTGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGTTAATGGCTGCTATGTCAATTGGGTCTGAGGCTTTAATTTTGAGTCAGATGCATCATTCTCCTGAAAGTACACATTGA

Protein sequence

MPRSSRHKSTRHGLKDARESSDSENDSSLRDRKGRESGSRVSKDTASSEKRRFDSKDTKDFYGSENLEAEEHGHSKRRKERYDEGTTDRWNGGSDEEHGVPSKKSKPSVDSKSKRRDESVVLQGDGEELKKNSGKGEGRHRESSRKEGRYGGGERERERDREKERKGREGRSDRVVASEEHRVEKQVERSTEDLSHSRSSSSKGCPLPVLFSRSSQENVLHSPGLENHLEVRVRKRAGSFDGDKHKDDIGDVEHRQLSTKNDVVKDGRRKNEKHKDERNRDKHREDTDRDGKERYEQPVKDHISRSNGRDLRDEKDAMDVHHKRNKPQDSDLDREVTKAKREGDLDAMRDQDHDRHHVYERDHDQESRRRRDRDRDRDRDGRQDRSRSRARDRYSDYECDVDRDGSHLEDQYTKYVDSRGKKRSPHDHDDSVDARSKSLKNSHHHANEEKKSLSSDKVDSDVERGKSQSQSRHADVSLSSHRRKSSPSSLSRGGINEYRHQDQEDLRDRYPKKEERSKSISTRDKGVLSGVQDKSSKYTYSDKTGETDGGNAIELSRDRSLNCKNVDIEESGRRHNTSIDAKDLSSNKDRHSWELQGEKLPPPMDGSSLAEPYFSKGSQSNPSPFHPRPGFRGGIDIPFDGSLEDDGRLNSNSRFRRGNDPGRIHGNTWRGIPNWTAPLPNGFIPFQHGPPHGNFQSIMPQFPAPPLFGIRPPLEINHSGIPYRLPDAERFPSHMHPLGWQNMLDGSSPSHLHGWEGNNGMFRYESHIYSGAEWDENRQMVNGRGWESKAEMWKRQSGSLKRELPSHFQKDERSVQDPVDDVSNREVCDESADTILTKTSEIRPKMPSVKESPNTSELLSETPTPLEQSMDDNSKLSCSYLSKLKISTELSYPDLYHQCQRLMDIEHCVTADEETVAYIVLEGGMGAVSISSNSAHQSFFHLNKSSVFQHAMNLYKKQRMEMKDMRAISGEKESSERTLQEKGMQVDSEGMPSSERRLEENGFNFNSEEVKAPVSTVGEEIAQAPIITASNSTEVEATDALVELEDLASTTASQVVKCPENPEESLPVTNSTEVVTMALEQQQANLDAKKDTIAVPVDNIPVNDTDKLSNIEMKGIVKGKDSTRCGVGKSCIENATLSFGDEIGERCEEEEEEEEGGLMAAMSIGSEALILSQMHHSPESTH

Homology

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BLAST of CmaCh02G011140 vs. TAIR 10
Match: AT5G53440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 403.7 bits (1036), Expect = 5.2e-112
Identity = 415/1287 (32.25%), Postives = 621/1287 (48.25%), Query Frame = 0


Query: 1    MPRSSRHKSTRHGLKDA-RESSDSENDSSLRDRKGRESGS---RVSKDTASSEKRRFDSK 60
            MPRS+RHKS++H  KDA +E SDSE ++SL+++K +E  S   RVSK++ S +KR     
Sbjct: 1    MPRSTRHKSSKH--KDATKEYSDSEKETSLKEKKSKEESSTTVRVSKESGSGDKR----- 60

Query: 61   DTKDFYGSENLEAEEH---GHSKRRKERYDEGTTDRWNGGSDEEHGVPSKKSKPSVDSKS 120
              K++Y S N E  E      SKRRK +  E  +DRWN G D++ G  SKK+K S   KS
Sbjct: 61   --KEYYDSVNGEYYEEYTSSSSKRRKGKSGESGSDRWN-GKDDDKGESSKKTKVS-SEKS 120

Query: 121  KRRDESVVLQGDGEELKKNSGKGEGRHRESSRKEGRYGGGERERERDREKERKGREGRSD 180
            ++RDE     GDGEE KK+SGK +G+HRESSR+E         ++ D+EK+RK +EG+SD
Sbjct: 121  RKRDE-----GDGEETKKSSGKSDGKHRESSRRE--------SKDVDKEKDRKYKEGKSD 180

Query: 181  RVVASEEHRVEKQVERSTEDLSHSRSSSSKGCPLPVLFSRSSQENVLHSPGLENHLEVRV 240
            +    ++H   K     TE                     S  ++   SPG EN+ E R 
Sbjct: 181  KFYDGDDHHKSKAGSDKTE---------------------SKAQDHARSPGTENYTEKRS 240

Query: 241  -RKRAGSFDGDKHKDDIGDVEHRQLSTKNDVVKDGRRKNEKHKDERNRDKHREDTDRDG- 300
             RKR     GDKH D+  DV  R L++ +D +KDG+ K EK +D+   DK  ED  + G 
Sbjct: 241  RRKRDDHGTGDKHHDNSDDVGDRVLTSGDDYIKDGKHKGEKSRDKYREDKEEEDIKQKGD 300

Query: 301  KERYEQPVKDHISRSNGRDLRDEK----------------DAMDVHHKRNKPQDSD---- 360
            K+R ++P K+H+ RS+ +  RDE                   +D +H+R + +D D    
Sbjct: 301  KQRDDRPTKEHL-RSDEKLTRDESKKKSKFQDNDHGHEPDSELDGYHERERNRDYDRESD 360

Query: 361  ---LDREVTKAK---------REGDLDAMRDQD-----HDRHHVYERDHDQESRRRRDRD 420
                DRE T+ +         R+ D D  RD+D     HDR+H    D D +  R RDRD
Sbjct: 361  RNERDRERTRDRDRDYERDRDRDRDRDRERDRDRRDYEHDRYH----DRDWDRDRSRDRD 420

Query: 421  RDRDRDGRQDRSRSRARDRY-------SDYECDVDRDGSHLEDQYTKYVDSRGKKRSP-- 480
            RD +RD   DR + R+RD Y       SD E D DRD S L+DQ  +Y D R  +RSP  
Sbjct: 421  RDHERDRTHDREKDRSRDYYHDGKRSKSDRERDNDRDVSRLDDQSGRYKDRRDGRRSPDY 480

Query: 481  HDHDDSVDARSKSLKNSHHHANEEKKSLSSDKVDSDVERGKSQSQSRHADVSLSSHRRKS 540
             D+ D +     S           ++ LSS  V    E G +  Q      S        
Sbjct: 481  QDYQDVITGSRSSRVEPDGDMTRPERQLSSSVVQE--ENGNASDQITKGASSREVAELSG 540

Query: 541  SPSSLSRGGINEYRHQDQEDLRDRYPKKEERSKSISTRDKGVLSGVQDKSSKYTYSDKTG 600
                 +R  ++E     ++ +   +P +   +   S R       + ++S   T  ++  
Sbjct: 541  GSERGTRQKVSEKTANMEDGVLGEFPAERSFAAKASPRP------MVERSPSSTSLERRY 600

Query: 601  ETDGGNAIELSRDRSLNCKNVDIEESGRRHNTSIDAKDLS-SNKDRHSWELQGEKLPPPM 660
               GG             +++++EE+G R+N    A+D S + ++RH            +
Sbjct: 601  NNRGGAR-----------RSIEVEETGHRNN----ARDYSATEEERHL-----------V 660

Query: 661  DGSSLAEPYFSKGSQSNPSPFHPRPGFRGGIDIPFDGSLEDDGRLNSNSRFRRGNDP--- 720
            D +S AE  F+  +  N S F PRP  R G+  P  G  E+D R+N+  R++RG      
Sbjct: 661  DETSQAELSFNNKANQNNSSFPPRPESRSGVSSPRVGPREEDNRVNTGGRYKRGGVDAMM 720

Query: 721  GRIHGNTWRGIPNWTAPLPNGFIPFQHGPPHGNFQSIMPQFPAPPLFGIRPPLEINHSGI 780
            GR   N WRG+P+W +PL NG+ PFQH PPHG FQ++MPQFP+P LFG+RP +E+NH GI
Sbjct: 721  GRGQSNMWRGVPSWPSPLSNGYFPFQHVPPHGAFQTMMPQFPSPALFGVRPSMEMNHQGI 780

Query: 781  PYRLPDAERFPSHMHPLGWQNMLDGSSPSHLHGWEGN-NGMFRYESHIYSGAEWDENRQM 840
             Y +PDAERF  HM PLGWQNM+D S  SH+HG+ G+ +   R ES++Y G+EWD+NR+M
Sbjct: 781  SYHIPDAERFSGHMRPLGWQNMMDSSGASHMHGFFGDMSNSVRDESNMYGGSEWDQNRRM 840

Query: 841  VNGRGWESKAEMWKRQSGSLKRELPSHFQKDERSVQDPVDDV---------SNREVCDES 900
             NGRGWES A+ WK ++G    E+ S   KD+ S Q   D+          +NR    E+
Sbjct: 841  -NGRGWESGADEWKSRNGDASMEVSSMSVKDDNSAQVADDESLGGQTSHSDNNRAKSVEA 900

Query: 901  ADTILTKTSEIRPKMPSVKESPNTSELLSETPTPLEQSMDDNSKLSCSYLSKLKISTELS 960
               + +   E+    P   E     + +SET       +D+  +    YLSKL +S  L+
Sbjct: 901  GSNLTSPAKELHASSPKTMEEVAADDPVSET-------IDNTERYCRHYLSKLDVSAGLA 960

Query: 961  YPDLYHQCQRLMDIEHCVTADEETVAYIVLEGGMGAVSISSNSAHQ-SFFHLNKSSVFQH 1020
              +L      L+  EH    D   V   + EGG      +SNS    S F    SSVFQ 
Sbjct: 961  DAELRKCISLLIGEEHLAMDDGTAVFVNLKEGGKRVTKSNSNSLKALSLFPSQNSSVFQI 1020

Query: 1021 AMNLYKKQRMEMKDMRAIS---------------------GEKESSERTLQEKGMQV-DS 1080
            AM+ YK+QR E+K +  +                       +  +   +++   M++ D 
Sbjct: 1021 AMDFYKEQRFEIKGLPNVKNHEAPQVPPSNLVKVENNDDLNDARNGNSSIEATDMKIADV 1080

Query: 1081 EGMPSSERRLEENGFNFNSEEVKAPVSTVGEEIAQAPIITASNSTEVEATDALVELEDLA 1140
                +S++ L++   N  ++      +   +E + +P     NS E     +   +E   
Sbjct: 1081 SDSDTSQKELQKVSSNAGAK----METETRDEGSSSP--NPDNSPEALNAVSSDHIEGSE 1140

Query: 1141 STTASQVVKCPENPEESLPVTNSTEVVTMALEQQQANLDAKKDTIAVPVDNIPVNDTDKL 1183
               AS  +   E  EE++ + +       A     A +D   +T A   D +P  D   L
Sbjct: 1141 EAMASDHI---EGSEEAVALDHIEGDEQEAKLDDGAGVDQTMET-APEHDGVPEGDAVTL 1181

The following BLAST results are available for this feature:

BLAST of CmaCh02G011140 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G011140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53440.1	5.2e-112	32.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 566..669
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 800..827
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 843..872
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 967..983
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 967..995
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 497..522
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 481..496
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..553
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 523..546
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 639..663
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..480
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 566..596
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 849..872
None	No IPR available	PANTHER	PTHR34837	OS05G0595500 PROTEIN	coord: 350..1182
None	No IPR available	PANTHER	PTHR34837:SF1	LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN	coord: 1..335
None	No IPR available	PANTHER	PTHR34837:SF1	LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN	coord: 350..1182
None	No IPR available	PANTHER	PTHR34837	OS05G0595500 PROTEIN	coord: 1..335

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G011140.1	CmaCh02G011140.1	mRNA