CmaCh02G011120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G011120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH-dependent glutamate synthase 1 isoform 1
Location	Cma_Chr02: 6604566 .. 6607904 (+)
RNA-Seq Expression	CmaCh02G011120
Synteny	CmaCh02G011120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATGCTTTAACAGCGTCAGCGTTATTGCTATCAAAGCCAAACGCGGCCATAGAAAGCAAATTGGAAACTAAGAGAGTAAAGCAGAAGAAGAAAATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCTTCAGCTTCAGGTATCTCTCTTTTTCACCCTTTAATTCCTTCGATTTTCTCCACCTTATTCTTCTTTTTGTTTGAAAATTTCTTTCTAACATTGTTTGAATTTTTTGAATCTTGTGGATGAGTTCTTGGTACTCTCTGGTAGATTGCTTGTTTGTTTGGTTGCAGAGGATCGGAATTTCACTGGCTTTTTGTTCCTGTTTGAGAATTTGTTTGTCTGTTTGATCGTGTAGAAATTGGAACTCCTTTGGTTTAGAACTGACTCAATTGTTTTGTTCTTGTGGAAGATTTGTTGTTTGTTTAGTTGTATAGAAACAGAAACTCATTAGCTAGAAATTTGGTTAACTCTTCGGTTCCTGTGGAAATTTTTGTGCTCCCACTGTTTGTTTGTGTAGAAACATAGACTCATTGGATTAGAAACTGAGGCAAATTGCAAATACTTTCGATTAAATTATAAGTTTAATCTCGGTTTGTTTCTAATTATCTATAAACGTTCAATTTTGTGTTTAAAAGTTATTGACACATTTAATATCTTTTTAAATTAACGAATCTCTTATACATAATGTTGTCTTATTGGATAATCATTTCATTTTTGTTCTACCATTCACGCTTTTACATTTCTTAAAGAAACTTTTGAATTCTTAGTCATCAAAGGTTTAGAAATTTATTAGATATTTGTCAAAGTTAATTACTTATTTGACACAAATTTAAAAATTCAAGCTCTTATTAGAAATTTTTAAAGTTAAGAAACATTTCTTACTAATTTTCCGTTTCTGTTTGGTTGTGTATGAACACAAGCTCACTGGGTTTTGGAATTGGTGCAAGTTTTTGTTCCTGTGGAAGAATTTTGTTATTGTGGAGGATTTCTGGTTCTATTTGGTAGTGTAGAGCAGAAATTCACTGTTTTTAGGTACTGAGTGAATCGTTATGTTCCTCCTATGGAAGATTTCTTGTCTGTTTGGTTGTTTTGTTCAGAACCAGAAACTCACTGGGTGTTTAAGCTGAGTCAACAATTTCGTTTTCGTAAAAGAATACTCTCCTCTGTTGGGTGGTATTGAAATAAATCTAAGCACAATTTTAGTTTTGGTACTATGTTCGATGCTGATGTTCTAACAGTTATTGGTCACGTGTTGTATACTCGTTAGCTTAATGGACATATGCCAGGCGCTAATTGTGCGAAGTTAATATGAGCTCTACACATATCTAAGCATACAAATGCATTAACTTATTGATTTTGGATTCATACCCTTACTGTAATCTGTGCCTAGTTTTTTAAGAATGACTGTATTTGTGTTTTTTCATATCCTGTCTCGATCCATATTTGTTGTTACAAAATTTGGGTGAGATTCAGTTTGGTTGATGGAAGTAATCTCTGAGCAATCCTTTGGTTCTTAAGATTTATTAGTATCTGGCTTAAGGCGACCCTGCACTCTTCCTTTAAGTTATCCTATATGTTATTGGAAATCTTCATTAGACTCTTCTGATTCCTTCCTTATACTTTCTTGATTCCTTGGTGTAAGATCCTACATTGATTGGAGAGGAGAACGAAATATTTCTTATAAGAGTGTGGTAACCTCTCCCTAGTAGATGTATTTTAAAATTGTGATGCTAACGGCAAATATAACAGGCCAAAGCAGACAATATCTACTAGCGGTGGAGTTGGCCTGTTACACTTTCCTTATGACTTCTAGTCTAGCTTGGGAAGGTTTGAAGTCAATTTAGAGGCCTTAGGCCGTGTTTGGTTTTTGGGAGCTTGTTTTTTGAAAATTGAATTTATTTTCTCGAAAAATTCCATCTTTTATAAGAAAACATTTGAATTCCGGACTAAATTCAAAAAAATGGATACAGAACAAAGAACGTATTCATATGCTTAATTTAAAAAAATAAGAAGTGTAATGATTATCAAATAATTGCGGGATGACAAAATCGACATTTAAAATAATTATTGATATCTTATCTGTTGAACTAAGATAACTTAAAAGCTTCTCGTGCTTGCATTTGAATTAGTTTCAGCCTTTGCATTTAACTCTTTTGATAATGTTTGGTTAAGTTCATGTGTAAAACAAATTACAAATTCTTTCTTGAACAAAGTTCCCAACTTATTTTGTTAGCCTGATGAATCTTACAATTTCTTCTTTTAGGATCTTCTTCCCAATCTCAACAGCGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAACGTCCCAGCGCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCCTGCCAAAGCGTACGCCTGTCTCCGACAGAGAGATAGAGGCTATATTGGTAAGCAAAATTTTGAGATCTTACGTTGATTGGTTAGAGAGGGAACAAAACATTTCTTATAAGGGTGTTCTCTCTCTAGTAGACGCGTTTAAAATCGTGAAGTTGACGGCAATATGTAACGGGTCAAAGCGGACAATATCTACTAGCAGTAGCAGATATTGTAAAAGTCCAAGTCCACTTTTAGTAGATATTGTCCACTTTGATCTGTTATGTACCATCGTCAGCCTCACTGTTTTAAATAGTGTCTATTAGAGAGAGGTTTCCACACTTTTATAAATAATGTTTCATTCTCATCTTTAACCGGCGAGGGAGCTCACAAAAATAGTCTGTTTTACGTCGATATGATACATGCATTCACAAATTTTATGGCACGTGTTAGAATTGTGAAATCAATAACAATTGAAAATGAACTTTAGTCTTAAACATGGACGGATGTTTGTTCTGATATTATCATTTGAGCTTTTCAAACTCCATGATTTTTCTAATCTCTCTATGTTTTGTGTCAATGCAGTTAGGTGGAACCTTTTGATCTTCTCCATCCGACGTCGAGGAAAGCTTAGCGTGACGATTCGATGTTAATCAATAATATTTCTGTAAACATTTGTTGCAAACTTTTGCATTTGCCTAGAATGTTATCAGAATCATTCTGATTTTGATTCTCTTCTTTGTATGGAACTGTTAAAGCTCCACGCCCACTGGTCGAGGGGAGGAAGAAAACACATGCCTGTTGCTCGAAACTCCGAGCATAGGTCTTCTCTTATGCTTTCTTTATTATCTTCTCATCAAACTGTATAGAAGATTTCAGACGTATCAATTTTCTAAACAGATATCTAAATCAAACCATTGTAACTTGTCGTAGTATTATTTTACCG

mRNA sequence

ACATGCTTTAACAGCGTCAGCGTTATTGCTATCAAAGCCAAACGCGGCCATAGAAAGCAAATTGGAAACTAAGAGAGTAAAGCAGAAGAAGAAAATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCTTCAGCTTCAGGATCTTCTTCCCAATCTCAACAGCGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAACGTCCCAGCGCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCCTGCCAAAGCGTACGCCTGTCTCCGACAGAGAGATAGAGGCTATATTGTTAGGTGGAACCTTTTGATCTTCTCCATCCGACGTCGAGGAAAGCTTAGCGTGACGATTCGATGTTAATCAATAATATTTCTGTAAACATTTGTTGCAAACTTTTGCATTTGCCTAGAATGTTATCAGAATCATTCTGATTTTGATTCTCTTCTTTGTATGGAACTGTTAAAGCTCCACGCCCACTGGTCGAGGGGAGGAAGAAAACACATGCCTGTTGCTCGAAACTCCGAGCATAGGTCTTCTCTTATGCTTTCTTTATTATCTTCTCATCAAACTGTATAGAAGATTTCAGACGTATCAATTTTCTAAACAGATATCTAAATCAAACCATTGTAACTTGTCGTAGTATTATTTTACCG

Coding sequence (CDS)

ATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCTTCAGCTTCAGGATCTTCTTCCCAATCTCAACAGCGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAACGTCCCAGCGCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCCTGCCAAAGCGTACGCCTGTCTCCGACAGAGAGATAGAGGCTATATTGTTAGGTGGAACCTTTTGA

Protein sequence

MGVEGHLLKRIPRIKFPERHPKSSASGSSSQSQQRPSTENLGYYALSGSNVPAPLQDTAVGGKASLLPKRTPVSDREIEAILLGGTF

Homology

[Close]

BLAST of CmaCh02G011120 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-14
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 8  LKRIPRIKFPERHPKSSASGSSSQSQQRPSTENLGYYALSGSNVPAPLQDTAVGGKASLL 67
          ++RIPRIKFP+RH  SS SG +       S   +     + S+VPA  ++TA GGKASL 
Sbjct: 1  MRRIPRIKFPQRHSISSGSGPAP-----GSVSGVKKNVTASSDVPAAPKNTADGGKASLQ 60

Query: 68 PKRTPVSDREIEAILLGG 86
          PKRTPVSD+EIE+I+LGG
Sbjct: 61 PKRTPVSDKEIESIMLGG 73

[Close]

BLAST of CmaCh02G011120 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.2e-11
Identity = 44/80 (55.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6  HLLKRIPRIKFPERHPKSSASGSSSQSQQRPSTENLGYYALSGSNVPAPLQDTAVGGKAS 65
          H LKRIPRIKFP+RH   SAS   SQ      T       L  SN+   +Q T  GGKAS
Sbjct: 5  HGLKRIPRIKFPQRHINPSASEGKSQVANEADT-------LFFSNL-NNIQKT-TGGKAS 64

Query: 66 LLPKRTPVSDREIEAILLGG 86
            PKRTPVS+ E+EAILLGG
Sbjct: 65 SQPKRTPVSNEEMEAILLGG 75

The following BLAST results are available for this feature:

BLAST of CmaCh02G011120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G011120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24165.1	2.4e-14	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G23885.1	7.2e-11	55.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..45
None	No IPR available	PANTHER	PTHR35751:SF1	BNAA02G37040D PROTEIN	coord: 4..87
None	No IPR available	PANTHER	PTHR35751	FAMILY NOT NAMED	coord: 4..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G011120.1	CmaCh02G011120.1	mRNA