CmaCh02G011110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G011110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Succinate dehydrogenase assembly factor 4, mitochondrial
Location	Cma_Chr02: 6604060 .. 6604392 (-)
RNA-Seq Expression	CmaCh02G011110
Synteny	CmaCh02G011110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGTCACTTCCACTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAACAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGAGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACTGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA

mRNA sequence

ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGTCACTTCCACTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAACAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGAGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACTGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA

Coding sequence (CDS)

ATGTCGAGCAATCTCACCCGTCTATTCTCGCCGCCTAGTCTCACCGCTCTATCGGCGGTGAATCGCGTCACTTCCACTTCGGTGAGTCGACTCGTCTCCTCCTCGGCGAATCAACAACCTTCTCGATTGGAGCAAGGTGTTCCCGGCGAGGAGCAACGAGAAGCTGGAAAAGGAAGTTTGCCGGATCAACACGAGGCTGCCGGAGATGATCGAGATAGTGAAGATGAGGGAGCTGATGTGAACAAAGCGACTGGCGAGGTCGGTGGACCTAAAGGTCCCGAGCCAACTCGCTATGGCGATTGGGAAAGAAACGGTCGGTGCTACGATTTTTGA

Protein sequence

MSSNLTRLFSPPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF

Homology

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BLAST of CmaCh02G011110 vs. ExPASy Swiss-Prot
Match: Q8BTE0 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-07
Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 24  TSTSVSRLVSSSANQQPSRL---------EQGVPGEEQREAGKGSLP----DQHEAAGDD 83
           T+ SVSR+       +PS L         ++G P   ++   K  LP    D  E + ++
Sbjct: 4   TTLSVSRMTFVWRAARPSLLNHSLRKMSYQEGKPEPAKQALKKSKLPLGRFDSLEDSPEE 63

Query: 84  RDS-EDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
           R+  +    DVN  T E GGPKGPEPTRYGDWER GRC DF
Sbjct: 64  REPLQKFPDDVNPVTKEKGGPKGPEPTRYGDWERKGRCIDF 104

[Close]

BLAST of CmaCh02G011110 vs. ExPASy Swiss-Prot
Match: Q9VLU6 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-07
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 81  NKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
           N  TGE+GGP GPEPTRYGDWER GR  DF
Sbjct: 89  NPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

[Close]

BLAST of CmaCh02G011110 vs. ExPASy Swiss-Prot
Match: Q5VUM1 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 45/113 (39.82%), Postives = 52/113 (46.02%), Query Frame = 0


Query: 3   SNLTRLFSPPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKGSLPD 62
           S L  L S  S TA  A          R  SSS   +   ++Q +         K  LP+
Sbjct: 4   SRLPWLLSWVSATAWRAARSPLLCHSLRKTSSSQGGKSELVKQSLK--------KPKLPE 63

Query: 63  QHEAAGDDRDSEDEGA-----DVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
               A +D   E E       DVN  T E GGP+GPEPTRYGDWER GRC DF
Sbjct: 64  GRFDAPEDSHLEKEPLEKFPDDVNPVTKEKGGPRGPEPTRYGDWERKGRCIDF 108

[Close]

BLAST of CmaCh02G011110 vs. ExPASy Swiss-Prot
Match: Q54Y25 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278459 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 14  LTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGE--EQREAGKGSLPDQHEAAGDDR 73
           L A    N++  +  S  ++++ N   +     +  +  E  +  +  L D  E    + 
Sbjct: 14  LNATKQTNKINCSFYSTTINNNNNNNNNNNNNNISNKKAEMSKENQQLLQDLEE----EF 73

Query: 74  DSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
           D ++    VN  T E+GGPKGPEPTRY DWERNGR  DF
Sbjct: 74  DEDEFKPYVNPITKEIGGPKGPEPTRYNDWERNGRVSDF 108

[Close]

BLAST of CmaCh02G011110 vs. TAIR 10
Match: AT5G67490.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 43/104 (41.35%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 21  NRVTSTSVSRLVSSSANQQPSR-LEQGVPGEEQ-----REAGKGSLPDQHEAAGDDRDSE 80
           N V   + SR VSS   +  SR L  G P   Q     ++  +   PDQ+         E
Sbjct: 5   NIVRLIAPSRSVSSRFLEPVSRFLSSGTPPPPQAPSPNQDLNRDVKPDQNLQQNLQMQKE 64

Query: 81  DE--------GADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 111
           +E        G  VN+ TGE+GGP+GPEPTRYGDWE+ GRC DF
Sbjct: 65  EEEEGEGGGGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108

The following BLAST results are available for this feature:

BLAST of CmaCh02G011110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8BTE0	2.0e-07	41.58	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=1009...	[more]
Q9VLU6	4.5e-07	76.67	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas...	[more]
Q5VUM1	2.3e-06	39.82	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606...	[more]
Q54Y25	2.5e-05	34.34	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Dictyostelium discoi...	[more]

BLAST of CmaCh02G011110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67490.1	1.4e-08	41.35	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012875	Succinate dehydrogenase assembly factor 4	PFAM	PF07896	DUF1674	coord: 74..110 e-value: 5.4E-18 score: 65.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..110
None	No IPR available	PANTHER	PTHR28524	SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G011110.1	CmaCh02G011110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008652	cellular amino acid biosynthetic process
biological_process	GO:0009064	glutamine family amino acid metabolic process
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043167	ion binding
molecular_function	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors