CmaCh02G010860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G010860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Trafficking protein particle complex subunit
Location	Cma_Chr02: 6456584 .. 6463085 (+)
RNA-Seq Expression	CmaCh02G010860
Synteny	CmaCh02G010860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGACTTGGCGCGCAGCGATTGATTACCAGAGAGCGATTAGCGTATCATCGGAAGAGTTTGGCGCCGTGAAGCTCCGATCTGCTGCCGTTGTCGCCGGTAATCATTGCTTGACGGATTAAGAATTGGGTCATTGTATCCATCGCAGCCTCTTTTCTGCCAGCTTTGCTCTCAGAGGTTTCATCTTTCTCGACTCCGTTGATTCTCCTTCTTGAATTTGTCACCCTCCTGCTCCATCACGAACTCTCTCCAGTCTAGGTACGTTCTCTGCAATTTCGTTCTTCCTTTAGTTGGAACTCTGAATGAATAGGATTCCGAATTTGACACTAGATTTGTTTATAACTGCAATGAGTGGTTTGTGGAAAAGCTAAAAGGAAATGCATCTGTTTCTTTAGGTCGAGCCATACAGATTTTTGCTGTATTGAATCCTGATCTGATTCGGCTTAGATTTTACACATTAGCGATTGGCGATTTTTGTTTTAATCTCTATAAATTATAATTTTTCCAATTTATTATTTTCTTCCCCTATACTGGATTAGATCCCATGTATTTATTGTTTTTCTGATCACCTCCCTTGCAATCCTACCAGAGAAAACGAGTCAGGTAATTGAAGAAGCGGGGAAGAAACGAGTCGAGTGAAAATGTTGGGAGTTTGGTCAGATTTTCAGATTCTTAGACCATTTTCGTATGATCATTGTTTTGATTCAATTTTGTCTTTCCCAGGAACATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGTCCCAACAGCAACTGGAAATAATGTGCATATGATGTATATTTTCAATAGGAGTGGAGTTTGCTTGTTTTACAGGGAGTGGAACCGGCCTCTTCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCCTTTACTGCCAAGATGGACCCAACCAGGTTTATCTTTCTTCCTTCACTAGGAAATTACTTTGGTTTTTGGGGTGCCTAGTTAAAAGGAATGATCCAACAAGATGGGAAATTGATACGAACCATATTTTTATGTCTTAATAACTCAACAAATACAGTGCTCCTTTATGGTCTGGTGGCAATAACTAATATCATGTTTAATTTGTTGTAGATTTAGATTTCGACTTTTAAGTCTTATCTTATTGAGAAGAGTTGAGCTTCTTTTGGGAGTTACATTCTGAATTTGAAGTGATGGCCTTCTTTTTTTTCATTTTTTGGTATAGTGCTGATAAAGGCAATCTTGGAGTGCCTCAGTTGCCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACAAATACTTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTATTTCAACCTTCCTTTCTCTGTTCTCTTTCATATTAGCCGCTGTAGGTTCATGCATGTCTACTTGAATTGTTTAGTTAAATATCTTGCTATATCACTTAATGAAACTAATGTTTGGCTTATGTCATTTTGTAAATTTATTCATTGTTATTATCATCGTTATTTGACAAGGCAGAACGGGGTTGGGGTCTTTCTTCTCTACACTTTCTTCTTGCTTTTCTGTCTTGTTCTAATAAAGTTCAGTTTCCTTGGTGATAATTAGTACTTCCAATGAACCTCCTTTTTGTTTCTTGTTTTATTCTTGAAGAGTTGAAGTTGGACTCTTTGAAGAAGCACTGTGAAGCTGCTGTTTTAAAATTGCTGCTTTTGAGAAATAATTAACCTGTGGTGCAAAATGGGGATCCTTGCCTTGAACTATAGTGTTGCATTGCTTGATTGATAATTTAGTTTAAAGTTCAATTTTGTTTAAAATGATGGATTGTTTCTTTTGTTTTCAGATTATCCTGGTTACCCATCCTAGAACCGGTGATTTAAGGGATTCATTAAAGTACATATACAATTTGTATGTTGAATATGCAGTGAGAAATCCACTCTACAATCCAGGAACCACACTCAGGTAAATTGTTAGCCACGATTGCTGCATAATTCCTATAGACCAACTGTAGTAATTTAATTCAAAGAAACTATGCTTGGAAGTCTTGCAAAACAAATTCAATTTCTTTGATGAATTTGAACTTTGTAATGCATGCGTTTATTAGTTTCAGTTTACAAATGATCAATGATGTCAGGCATTGAGAAACGTTTATTGGTGCTTGCACCTTAGCTGTAAATACTTTGTCTCAGAGGTCCGTTTAGGAACCTTTTTTTGATTCTCTAGATTCTATCGTTAGGCTAAATTACAACTTTAGTCCTTGGGGTTTGGGCTTGGGTTCAATTTGATTTCTATGATTTTAAAATTTCATTATAGTCTTGTGGTTAGGTTAGATCTCCCAAAACATCATAGTTCTTACCATATGTTATCAGTTTTCTTACTTGATATGGTTTTTTTCCCCATTTTTCATGTGGAAAAGAGAGACAATAAGTTTAACTTTAGGAATGGGTAGAGTTTAAATTTGCAGACTATATTAAAGTTTAATTTGGGTAAAAAAATAATAAAAGAAGTTGGGTGGGTATTCAGGTAAAAGAGGAAACAGGTTTGTATTAAAAAAAAAAAAAAAGGGTTGGGGACGGGGGTTTTGAAATATGAAAATATAGGCGACTTAAGACTTAGGTTGGTTGCACAACTTGCTTTCCTCTATTTTTGACTCAACCACGATACAATCAACAATTTAACCTTTAGATATGCCTTATATTGAATGGCAGCTCATCGCCCTTCGTTGCCCCTTCCAAAGAAAAAGAGTTGTGGAAGAAAACTATTAACACCTCATAATGGTAGAGACATTTATGGGAGATTTGACAAAGTTATATGGACTATGATGAAAATTTTAAAACCATATAGTCGAAATTGAAACCAAATTCAAACTGTATAGACTGAACTGTTAATTTTAACCCTTTTTACCTGAAAATTTTACGTTGGAGGATATATATCCCTTTGTTAACTTTTCCTCTTTACTTCTTTTCACAAAAAAATTTAAAATGTTACAAGATCTTTTCTACAGATTTAACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCAAACATTCCATGCTCCTACGATATAGTTTCTTTTTAATGAAAACAAAGTTATTCTTGTTTTTCCTGGCGGCTCAATATTGACACTATCTTTGATTAATAATTTGATTTGGCTTTCTGTAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAGAAATCAAAGGTAGCTGACTGCTCTGCCATTTTTGTTTCATTCAAGTTGTCAAATGTTTTCTGTCTCTTGTTGATGAATGAATGCGATTTATTGAACAATGGTACAGGTGCAGGGCATTAGAACCTCCTTGTCGAAAAATTCCTACCTGGGAGTTTATTTTTTATTCCATTGGTTGGACTCAAGATAAGTGCACCGGCATGAATTATTCAAGTTTTTTTTTCTTTTCGTTTCATGTTTTTTTTTTCCCATCATTTTTGTGGTGACTTATGGTGTTGCGATAGTGGTCGAAAGTTGTTAAAAAAAAAAAGAATTATATTATTTGCAGCAATGCAGCTATGTTTCTTGTTTCATCTACCCACATACCATACATTAGGAGTCCTTTGTGTAAAAATGTAAAGGTTTCAAACGGAGAAGATTATGTTAGTTACCTTCTTAACCGCTTTCACCTTTCCATTATCTCTTCATCAATATCTTGTTATTTGTTTCAACCTTATTATGCACCTCCATTAAATAATGCAAGTTTCTTTGTCCTTTTTGAGATTTTGATATTTGTCAAGTATCTAGGCCAACTTGTATACACCTCAACTAATCTTAGAAGACAATTGCCTAATCTTATTACATTTAGTTGTCCAGGAAACTCATTGGATATTGATTCCTAGGTTGGTGACTACCTTTGGTGACTACCTTAGCATGAAACTATTTTGTCTAAGCCATTGACTGTTTATTACTACCCTCATTGATCAACAAGCCAACCACACGGTGGTTTAGGAAGTTTGCCATAGTGTAACTCTTCCTTTGGGTTCCCAAGTCATTAGGAATAGATTTTGGTCCCTTCAAGGTTGATAGACCTCTATCTCTTGGTTCAACTATCAACTTTATCTCTCCTGATATTGATCACTCTGTCTCCCATTGAAGTTGTGAAGTTAATAGGATTCCCAATGAGGGATACGCCAACTTAAGGAAGGAAAATCAAGGTCAAATTTGAGGCCCCCATAGTTTGTTGACGCATTAATTCTGTATTGTGCTATGCCCATGGCTGTTGTGTTGCACTGCTGTGGCAATGGAAGCTAGATCTCTTTCAGTACTATAATTTCGTAACGTGTTTGTTTGGGCTAAAAAAAGATGTCAATGTACAACCATCATCCATTAGGTATACAATGTCGGTTAGCAACTAACATAGCAGAAAACCATCCTCATATGTTTACGATGACACTGGATTTGAAGTCAATAGTGAAGTGTCGATGCATAGGTTGATGGCATGCTTTTGTTTGGTTGTTTTAAATTGTATCATTGTACAAAGTGCATTGTTATTTTTGTATAGGATTGTATCATAACTAAAATAACATTTTCATTGTATCATAAAAGTATTAATAAAATATTACTAATACTAAAAAAATGGTAATTTTGTGGGTGTTTTGATTTGAATGGGGATAGTTACTTGTTAGTGATGATTGAAATGGGAAGATGTTTGAGAGACTGAGACTGAGAGAAAATGACAAAGGGAAAGACTGCAGACTGAGATGGAATACATTGACAGACAGTGAAGAAAGGGAGAAAGGATTCCCCTTTTCCCTCTCTTTTGGTTAATAGTTGGAGTTTGCATCAGACAAAATCCAGATTTCTTTTGAAATTGGTTCATAATAATTATGACCCTTTTCACCCTTTTCATATTCCAACCCTCAAAACCAAACCCATTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCATCACCCAAAAATTTCCCCCTTTACAAACAAAACTCACAAATTTATATTCTTTCGTTTCACTGTTCTTCCTCTTCTGGGTTGCTCTCAAATCCCTTCTTCTTTGCTTTCTCTGAAAGAAAAATCTGCCAAAATGAAAAGAAGAAACCCAAATCATCATCAGTTTTGGTTATTTCAAGCTCTGTGTTACATAATCAATGGTGGAACTGGGAATGAGTAGTATACCTTTACAAGATAGACTTCTTGACCTTTCTTGTGAGGCTGCTGTTTCTGACCTTGAGAACAATAAAGGTTTCTCTGACCACGAAAATAAATTCAACATTAGTGGCATTTTCGCGGTTTGAATTCTTGGTTCGCTATAATTTTGTTCTAAAGAGTTGGTTTTTACCTGTGGATGCGTTGAAGGATCTTTTACAGTGTAAAATGGCGCTTTGAATCCCGTCGTGTTGCTGCAACAACGAATCATCTCTTCGGTTCAACGGGGGCGCCACCGCCAATCCACCGGACGCCGACGCCGATTTGCTCTTACCCAGATGCTTACAGACCAACCGAATCCCCGCCGGCAGGCCATTATCGTGCTTGTCCCTCGCCGGAGAATCCACTGTCGTCGACAGATTGTCGCTGTAGCCGGTGGGTTTCTTCAGAACCTTTGGCTTAATCAGCCTCAAATACTTCTGTACCGCCTCCTTCGAGAACCGTCTCGCTGTTGCCGTCGTTGTCGCCGGATCCTCACAAGGGTCGGCTGGAAAAATACCTCCGATTCTCCTGGTGCTGTTGTCTCTGGAAAGATTCGAGCTCAAAACTCTGCGTTCTACTTGTTCTGTTCCGCCGGACGCTCTGTTTTTGGCCATTGATCTCTGTTTGTTGAAGATGGAAACAGGGAACTTGGGGGCCGATTTGAGAAGCTGAATAGGGGAGTGGGGCTTGGAAGTGGGTTCGATTGGAAGAATCTTCCGTTTGGAAATGGAATCGGAACAGAGGTTTATGTGTTCGCCTAGTTTGGTGGGAATTTGAGGTGTCTGTTCTGGGCTGTGAATATCGCCGGCAGAAACAGAGAGAAACTCGAGATCGAAGAACGAATCTTCCTCTTCTTCTCCATCTTGTTCTCGTTTCTGCTGTTCATCGGCGACGGAAAGTTTGAACAGCCTGCGAAAGGCGAGGGAATCCATGGTGGGAGGAGAGAGGAGAGGGGTAAAAATGGTGGGGTTTTGGTGGGTTTTATAAAGAGAGATTTGGGGTTAGTTTCCTCAATGGAGGGATTTTGGTTTACAGTAATTGGAATTGAAAATGTAGTTTGGCAACTTTAAGAACAAACAGAGGATGATGTAAGCCTTTTTTCTTTTTTCCTTTTCTTTTTCTACCAATATTCTTTTTAAAGTCTCCC

mRNA sequence

TTTCGACTTGGCGCGCAGCGATTGATTACCAGAGAGCGATTAGCGTATCATCGGAAGAGTTTGGCGCCGTGAAGCTCCGATCTGCTGCCGTTGTCGCCGGTAATCATTGCTTGACGGATTAAGAATTGGGTCATTGTATCCATCGCAGCCTCTTTTCTGCCAGCTTTGCTCTCAGAGGTTTCATCTTTCTCGACTCCGTTGATTCTCCTTCTTGAATTTGTCACCCTCCTGCTCCATCACGAACTCTCTCCAGTCTAGAGAAAACGAGTCAGGTAATTGAAGAAGCGGGGAAGAAACGAGTCGAGTGAAAATGAACATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGTCCCAACAGCAACTGGAAATAATGTGCATATGATGTATATTTTCAATAGGAGTGGAGTTTGCTTGTTTTACAGGGAGTGGAACCGGCCTCTTCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGAGTGCCTCAGTTGCCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACAAATACTTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATTTAAGGGATTCATTAAAGTACATATACAATTTGTATGTTGAATATGCAGTGAGAAATCCACTCTACAATCCAGGAACCACACTCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAGAAATCAAAGGTGCAGGGCATTAGAACCTCCTTGTCGAAAAATTCCTACCTGGGAGTTTATTTTTTATTCCATTGGTTGGACTCAAGATAAGTGCACCGGCATGAATTATTCAAGTTTTTTTTTCTTTTCGTTTCATGTTTTTTTTTTCCCATCATTTTTGTGGTGACTTATGGTGTTGCGATAGTGGTCGAAAGTTGTTAAAAAAAAAAAGAATTATATTATTTGCAGCAATGCAGCTATGTTTCTTGTTTCATCTACCCACATACCATACATTAGGAGTCCTTTGTGTAAAAATGTAAAGGTTTCAAACGGAGAAGATTATGTTAGTTACCTTCTTAACCGCTTTCACCTTTCCATTATCTCTTCATCAATATCTTGTTATTTGTTTCAACCTTATTATGCACCTCCATTAAATAATGCAAGTTTCTTTGTCCTTTTTGAGATTTTGATATTTGTCAAGTATCTAGGCCAACTTGTATACACCTCAACTAATCTTAGAAGACAATTGCCTAATCTTATTACATTTAGTTGTCCAGGAAACTCATTGGATATTGATTCCTAGGTTGGTGACTACCTTTGGTGACTACCTTAGCATGAAACTATTTTGTCTAAGCCATTGACTGTTTATTACTACCCTCATTGATCAACAAGCCAACCACACGGTGGTTTAGGAAGTTTGCCATAGTGTAACTCTTCCTTTGGGTTCCCAAGTCATTAGGAATAGATTTTGGTCCCTTCAAGGTTGATAGACCTCTATCTCTTGGTTCAACTATCAACTTTATCTCTCCTGATATTGATCACTCTGTCTCCCATTGAAGTTGTGAAGTTAATAGGATTCCCAATGAGGGATACGCCAACTTAAGGAAGGAAAATCAAGGTCAAATTTGAGGCCCCCATAGTTTGTTGACGCATTAATTCTGTATTGTGCTATGCCCATGGCTGTTGTGTTGCACTGCTGTGGCAATGGAAGCTAGATCTCTTTCAGTACTATAATTTCGTAACGTGTTTGTTTGGGCTAAAAAAAGATGTCAATGTACAACCATCATCCATTAGGTATACAATGTCGGTTAGCAACTAACATAGCAGAAAACCATCCTCATATGTTTACGATGACACTGGATTTGAAGTCAATAGTGAAGTGTCGATGCATAGGTTGATGGCATGCTTTTGTTTGGTTGTTTTAAATTGTATCATTGTACAAAGTGCATTGTTATTTTTGTATAGGATTGTATCATAACTAAAATAACATTTTCATTGTATCATAAAAGTATTAATAAAATATTACTAATACTAAAAAAATGGTAATTTTGTGGGTGTTTTGATTTGAATGGGGATAGTTACTTGTTAGTGATGATTGAAATGGGAAGATGTTTGAGAGACTGAGACTGAGAGAAAATGACAAAGGGAAAGACTGCAGACTGAGATGGAATACATTGACAGACAGTGAAGAAAGGGAGAAAGGATTCCCCTTTTCCCTCTCTTTTGGTTAATAGTTGGAGTTTGCATCAGACAAAATCCAGATTTCTTTTGAAATTGGTTCATAATAATTATGACCCTTTTCACCCTTTTCATATTCCAACCCTCAAAACCAAACCCATTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCATCACCCAAAAATTTCCCCCTTTACAAACAAAACTCACAAATTTATATTCTTTCGTTTCACTGTTCTTCCTCTTCTGGGTTGCTCTCAAATCCCTTCTTCTTTGCTTTCTCTGAAAGAAAAATCTGCCAAAATGAAAAGAAGAAACCCAAATCATCATCAGTTTTGGTTATTTCAAGCTCTGTGTTACATAATCAATGGTGGAACTGGGAATGAGTAGTATACCTTTACAAGATAGACTTCTTGACCTTTCTTGTGAGGCTGCTGTTTCTGACCTTGAGAACAATAAAGGTTTCTCTGACCACGAAAATAAATTCAACATTAGTGGCATTTTCGCGGTTTGAATTCTTGGTTCGCTATAATTTTGTTCTAAAGAGTTGGTTTTTACCTGTGGATGCGTTGAAGGATCTTTTACAGTGTAAAATGGCGCTTTGAATCCCGTCGTGTTGCTGCAACAACGAATCATCTCTTCGGTTCAACGGGGGCGCCACCGCCAATCCACCGGACGCCGACGCCGATTTGCTCTTACCCAGATGCTTACAGACCAACCGAATCCCCGCCGGCAGGCCATTATCGTGCTTGTCCCTCGCCGGAGAATCCACTGTCGTCGACAGATTGTCGCTGTAGCCGGTGGGTTTCTTCAGAACCTTTGGCTTAATCAGCCTCAAATACTTCTGTACCGCCTCCTTCGAGAACCGTCTCGCTGTTGCCGTCGTTGTCGCCGGATCCTCACAAGGGTCGGCTGGAAAAATACCTCCGATTCTCCTGGTGCTGTTGTCTCTGGAAAGATTCGAGCTCAAAACTCTGCGTTCTACTTGTTCTGTTCCGCCGGACGCTCTGTTTTTGGCCATTGATCTCTGTTTGTTGAAGATGGAAACAGGGAACTTGGGGGCCGATTTGAGAAGCTGAATAGGGGAGTGGGGCTTGGAAGTGGGTTCGATTGGAAGAATCTTCCGTTTGGAAATGGAATCGGAACAGAGGTTTATGTGTTCGCCTAGTTTGGTGGGAATTTGAGGTGTCTGTTCTGGGCTGTGAATATCGCCGGCAGAAACAGAGAGAAACTCGAGATCGAAGAACGAATCTTCCTCTTCTTCTCCATCTTGTTCTCGTTTCTGCTGTTCATCGGCGACGGAAAGTTTGAACAGCCTGCGAAAGGCGAGGGAATCCATGGTGGGAGGAGAGAGGAGAGGGGTAAAAATGGTGGGGTTTTGGTGGGTTTTATAAAGAGAGATTTGGGGTTAGTTTCCTCAATGGAGGGATTTTGGTTTACAGTAATTGGAATTGAAAATGTAGTTTGGCAACTTTAAGAACAAACAGAGGATGATGTAAGCCTTTTTTCTTTTTTCCTTTTCTTTTTCTACCAATATTCTTTTTAAAGTCTCCC

Coding sequence (CDS)

ATGAACATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGTCCCAACAGCAACTGGAAATAATGTGCATATGATGTATATTTTCAATAGGAGTGGAGTTTGCTTGTTTTACAGGGAGTGGAACCGGCCTCTTCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGAGTGCCTCAGTTGCCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACAAATACTTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATTTAAGGGATTCATTAAAGTACATATACAATTTGTATGTTGAATATGCAGTGAGAAATCCACTCTACAATCCAGGAACCACACTCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGGAGCATATCATAG

Protein sequence

MNMQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS

Homology

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BLAST of CmaCh02G010860 vs. ExPASy Swiss-Prot
Match: Q557G3 (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.8e-30
Identity = 57/147 (38.78%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 25  VHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 84
           ++ +YIFN+ G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D     
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID----- 61

Query: 85  VPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYAV 144
                     FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEY +
Sbjct: 62  ------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVI 121

Query: 145 RNPLYNPGTTLRCELFNTSLDQYVRSI 171
           +NP+Y  GTT++C+ F   L+ Y++ +
Sbjct: 122 KNPIYKHGTTVKCDTFINQLNLYLKQM 137

[Close]

BLAST of CmaCh02G010860 vs. ExPASy Swiss-Prot
Match: Q5NCF2 (Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.8e-30
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 0


Query: 25  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 84
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 85  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 144
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+ 
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 145 VRNPLYNPGTTLRCELFNTSLDQYVRSI 171
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]

BLAST of CmaCh02G010860 vs. ExPASy Swiss-Prot
Match: Q2KMM2 (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.8e-30
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 0


Query: 25  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 84
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 85  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 144
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+ 
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 145 VRNPLYNPGTTLRCELFNTSLDQYVRSI 171
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]

BLAST of CmaCh02G010860 vs. ExPASy Swiss-Prot
Match: Q17QI1 (Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 25  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 84
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 85  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 144
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE  
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 145 VRNPLYNPGTTLRCELFNTSLDQYVRSI 171
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]

BLAST of CmaCh02G010860 vs. ExPASy Swiss-Prot
Match: Q9Y5R8 (Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 25  VHMMYIFNRSGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 84
           VH +Y+F+R+GVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 85  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYA 144
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE  
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 145 VRNPLYNPGTTLRCELFNTSLDQYVRSI 171
           V+NPL   G T++ ELF + LD YVRS+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]

BLAST of CmaCh02G010860 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 321.6 bits (823), Expect = 3.8e-88
Identity = 145/169 (85.80%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 3   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 62
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNR+GVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 63  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 122
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 123 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 172
           +TGDLR+SLKYIY+LYVEY V+NP+Y+PG+ ++ ELFNT+LDQYVRSIS
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSIS 169

[Close]

BLAST of CmaCh02G010860 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 321.6 bits (823), Expect = 3.8e-88
Identity = 145/169 (85.80%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 3   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGL 62
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNR+GVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 63  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 122
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 123 RTGDLRDSLKYIYNLYVEYAVRNPLYNPGTTLRCELFNTSLDQYVRSIS 172
           +TGDLR+SLKYIY+LYVEY V+NP+Y+PG+ ++ ELFNT+LDQYVRSIS
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSIS 169

[Close]

BLAST of CmaCh02G010860 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-13
Identity = 41/146 (28.08%), Postives = 69/146 (47.26%), Query Frame = 0


Query: 25  VHMMYIFNRSGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 84
           ++ +YI N+SG  +FY++     R      D   +  L  S+ + + ++ P +       
Sbjct: 4   IYSLYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN------- 63

Query: 85  VPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYAV 144
                  GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +Y +
Sbjct: 64  -------GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVL 123

Query: 145 RNPLYNPGTTLRCELFNTSLDQYVRS 170
           +NP Y     +RCELF+ +L Q V+S
Sbjct: 124 KNPFYEIEMPIRCELFDINLTQAVQS 133

The following BLAST results are available for this feature:

BLAST of CmaCh02G010860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q557G3	7.8e-30	38.78	Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44...	[more]
Q5NCF2	7.8e-30	44.59	Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q2KMM2	7.8e-30	44.59	Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=...	[more]
Q17QI1	5.0e-29	43.92	Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 ...	[more]
Q9Y5R8	5.0e-29	43.92	Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of CmaCh02G010860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51160.1	3.8e-88	85.80	SNARE-like superfamily protein	[more]
AT1G51160.2	3.8e-88	85.80	SNARE-like superfamily protein	[more]
AT5G02280.1	5.2e-13	28.08	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 25..170 e-value: 1.9E-60 score: 216.8
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 25..169 e-value: 1.0E-46 score: 158.4
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	coord: 3..170
None	No IPR available	GENE3D	3.30.450.70		coord: 24..171 e-value: 6.4E-46 score: 157.9
None	No IPR available	PANTHER	PTHR23249:SF18	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1-LIKE	coord: 3..170
None	No IPR available	CDD	cd14855	TRAPPC1_MUM2	coord: 26..166 e-value: 5.0525E-66 score: 196.229
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 25..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G010860.1	CmaCh02G010860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030008	TRAPP complex