CmaCh02G010590 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G010590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NERD domain-containing protein
Location	Cma_Chr02: 6329276 .. 6334489 (-)
RNA-Seq Expression	CmaCh02G010590
Synteny	CmaCh02G010590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTCTAAGCTTAGAGATTGAAGAGACGCGAGATGTTGTATAGTGATTGATGAAACTTGGGTAAGGTCGAGTCGAAGTGTTTTGAAGGAAGGATGATCGAGAAATTTCATAGAGAGCAAATGCAAATTCTTCATTCCTTCTTCTCCTGAACCAACTCCTACTCGGCCTTCGCAAAAATTAGAATCCACATACCCTTTCTAATTCCTGCGATCGAGCAAGTTTTCGCTGTGCATAATCGTTGAGGGCGCTGTCATGTGGTTTGAGATACTCTGTGGTTTCATAGCGTTTAGATTGCTCAGACGATTCTTTGGTCAAGGGGATGGATTGGAGATCGAGACCTCTGATTCTAATGCCCTATTCGCCGTTGCTTCGAGGTATATTCTCATCGAAGCATTTCTGCTTTGCTCAGGAAGAAGGTTGTGATCTTATGCTGATTTTTGTGTTTTTAATTTTAATTTTGGCAGATTAGAAAAGATTTATAGTGGAAAGATTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGCTTGCGACAGAGTATTGATATGGTGCTTGTAACCAAAGGGTAGATTTCTCACTTACCAAATCTTATTTGTTATCTTTTAACGATCTTGATCGAGAATTTGAGATTTGGACAATTTCTTAGTTCGCTCTCATAATTTACAGAGAGTGAGGTTATGAATATGTATACACCGCAATGCTACTTCAGCTAAAAGAATGATGCACGTAGAGAAGTAATTTGTAACTGACTCTAGAACAGGGAGGGAGACTAATGAGGGTGACGAGAAGGGAGACGAATGAGAGAGCATGAGGGGCAAGAACATTACTCAATTCTACGTCTAAACGTGGCATGATGTACTAATTCTAGGGATACTAAGTGTAATACTAATTTGAGTGGAAAAATAGAACAGTGGCTGCTACCATTGCACTTGTCACATTTGGTATTCTTCTTTAATGCTAAGAACAGTATATTAAATGTCAACTAGCTTAGAAACATATTGCATGATGTTTGTTAATTCTGGCCTTTTCTTTTTGCCATCATTGCTTATGCTTTCACTGATGTAAATTCATACAGGGAAGCAGTGGTGGTATTGGTAAAAAATCTTTCAGGTTTTGTTTCTGTGAGTGCTGATGGCAGCTGGATCTGTGAAGGCGACGGTAGACAAAAGTCAGAGATTCTGCCTGATCCGGTAAGTTTCTTTCATTTAGCCAAAGCTTATCGCTCATCTTAACATTTCTCTTCGTGGACTAGTTGACTTTATGCTCCATTTACAATTTTTTTAATCTATTTTGAGAGTGCCTTTTGTTCAATTACACGTTGAAGATGAGATTTGTTCTTGGGGTTGGTTATGTTTTGTGAGATCCCACATCGGTTGGAGAGGGGAACAAATAATTTTTTATAAGGGTGTGGAAACCTATCCCTAATAGACGCGTTTTAAAACTGTGAGGCCGACCACGATACGTAACAAGCTAAAGCGGACAATATAGGCTAGCAGTGGGCAGGCTGTTACATGTTTATACCATTAGAGTTAGATTACAGAAATATTATTAAGATACTAAGGATCCCTTAGTTAATAGATAAAAGAGTGTTAAAAGAGTTTTTTTCATCGAGAGGTGTTTATTAATAGAGTTATTTTATTTTGATCCTTAATGATTTTTTATCAAGAAGTTTGCCGTTTGAGAAGGTACTTTCTAAAATAGAGTGGGTATGATGAGGGGATATCAGGTTTTTCTACTATCCATACTTCTTTATTGTAGTAAACCGTCCAAAGCTTTTGAGCTTGTGGTGCTGGAAATAATCAAATAAGCCTAGGAACAAGTCGTGTGCCCTGTACCTTTTGAAGGGAAAAAAAAAGTGAATTCTCTAGATGCTATAAGAGCTCGTCTTTTGAAATTTTGGTTGGACAGAAATACTTCCCTTTTCTGTGAATGATTTTGGAGAGAACAACTGTGTTACTTTTTAATAGAGCTCTCTTTCTAACCAATTTTGTAATTATTCCTTTTTAGTTGTTTGTCCTTTTTGTATCTTTGATTACTAGTGGAAGCTTCTTCTTATGAATCTCCGAAAGTTTCCAAATTAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAAAAGAAAAGAAAATGAGATACAGAAATGGATATTTATATCGTATGTTTAATTTTAAATACAGGTGGCTGAGACACGAAGATGGGCCTCAATTCTAGAGTCATACCTTGAGCGGAGAGGAGTTGCACTGCCAGAAGGATATTTGTCGTGGAAAGTTTTGCTTCCCAACCCAAAATTCCGGTATGTAATGGATAATCACTATTTTTACGCTTCTGATGTTGGACTTGGTTCCTTACTGAAGAAGGTAGTCCGATAATCTTGAAATATCGCAACACATTGTTACTTTCTATTAGCCATACTTTGGATGAGGCACGCAAAAGTATTTCTTCAAGTTCAAGCTGTGAACTTAACATTTTACTAATTCAAAAGTGGATACATAATAGTTAACTTGAAGCCAGATAAATATTCCAATTTGTCAAAAACTGATAGATTATGTGTCATATGATATCTACATCACCAAGGTTCACAATGTCAATGTCAATGTAAATATTGAGGTTTTAATTTATGGAAACGTTAATATTAATTGACATGTTGGTGCAATAACACCTTTCAAACAAACTTAGAGAACAATTCTCTCCCAAGTTAGAGTAGAGGATGGAAACAGGATTCTGTCAACGCCCTCCTCTTCAATATTACGAAAATGTTTATTGGTGGTTTAGTTCAGTTTCAAGAATGATCTTTAGAAACTCTCCTCAATCTCTGTTGCAATGCTCTTCAAGATTTCCATTGATATAAAGGCAAGTATTCAAGTAAGCTCTTTATGTGAGCTTATTACAATCTTCCTTACAGAAACTAAGTCTTATAACGGATCAATTCCCTTTGACACCTTAGCCTATGGAGAATTGATATGCCTTATTGTCACTGGTCTAATTTAAATATTATTGAACTTCTCTCTACTGTGAACTTGATATCACATTGAGTTCTCACTATTAATGGAACATAGGAAAGATATGAAGCAATCTTTGATTTTTGTATCATGACATCCACGGCACCACTCAACAATTTCCTGAAAGTTGCTTGTTATTAAGTGCAGAACAGTCCATTCAAACTATTTTCCTTCTGAAGTCATCACATATGATCAGTGGATACAGTTGAAACCAGAATCAAAAAGCGTGTTCTCTGGTTGGATAAAGAGTGCTCTGCGTGGAGGGAAAAAAGAGATGCAGGAATCGAAGGATGAGAAGCTAAATTTTGTCCTCAACACTGCACCCATGTGGGATAGGTTTGTACGCATACTTTTAGTGCACTGCTTATTGCATGAACTGTCACCTTACTTTTTCCATCTATTTGTTCATGTTGATTCTACCAATCATTGGATGCATAAGTTTTAATTTTTTGAAAAGAAAGAATATAGTAAACAATTATCAAAATATTTATTATGTTTTGTGTGAAGCAGGAAGGTCCCGTATGAATTCCTTAACAGACTTTAAATCTTAACATAGGATTTTTTTTTCTAACAAGACTAGAGGGAACTTGCGATTGGACTATGGCTAAGCTGTTGCCATAAGAAATGTGCTGATATGTTTTTTTCCCTCTTTATCTGCACTAGCTTCTTAAAGCATGTATCACATGTTATACATTATAATTTAAAAGTTGGATGTCAATTACTATATATGTTCATCAGTAAATTAGTTATATTTAGTGATTTACAGAACGAACACATCTGCACTCCATATGACTACAATTTTGTCATAAGAAGTAGAAAAATAATTGTAATGTGAAAAATATACTGGTTATTATTTACATATAGTAAAAATATATACAAGGGGATTAAGTTGCTTGAAAGTACTAGTTTGCGCACATAATGATCTGAACATTTTACTCTGCAATCTCTGCCTTTTCTGCCTCTTCAGGTTGGAATTAAAAGGAAATAACCTTGTTCTGGGAGAATTCCTGGAGTTCAAAGGGAAGAAAGAAGATATGCAGGCCTTGAGAGAGATCAAAAGATCAAAAGTTAGTTGCATAGTCATCCAGAAGATGAGAACGATCGGATTTGGTAATATTCAAATTCATTACAGGCTTCATGCATATACCACACAATATGATTTACACGTGTTAGTAGTGAGCACCTTTAAATCGGTCAATAAAGATAAATTCATGATCTTAAGGCTGTCTGTGGATCTTATATTTAAAGTTATTTTGTTTTTGGCCTAATATAGGAAAAAAAATTGACTGATAAAGGCTGAAACATCAAAACATACATGTATACAGGGAGTAACCAAGTTTAAAAACAGGAGATGATACATCTCCCCTGTCAAGGAACTGCTGCATCCTATTCTATCTTTAAAGGAAGATGGGGAGATGCAAAGAGTCACGTAATGACAATATAGCTTGGGGAGAAGTCTAAAAATACAAGCTGTATACTCTACAAAGTCCCAAAAAGTAACAGAGATATCTATACTTCTCACCGAAGATCCTGTTGTTTCTTTCTAAGATTCTAACTTCAAAGAAGAAGAATAGATCTTTAAGTTATCTTCCAAAAATTCCTGTCTCAACCACCAATTTGAGAGAATTTCTCGAGGAAAAATGGTAGTCCCTTTCAACCACCAATTAAGACCTTGGAGAGTTCGATGAAGTTTTGGATGGATCATTCCTTGAACTAGTAGTTCCTCATATTTGCACTTTAAACACATCAGTTTTCTGCCTCTTCATATTTTCTTTTTGTAAATGCAGGTCCTTCAAGACTTCGTGTTTTATACTCTACTCGGAATTATCAAAATGAGGGGACCTCTGCTTCCGAGTGGAAGGAAATAACAATAGGATCCAATACAATGGTAGTATTTCAGATGGAATATTCTTCGAAAGTTCGAAAAATCAAGATCTCTTCAATTGTATCTCTATCACTAAGCGCCTGAAGATGTCTGGTCAGTGTTATTATTTTTAACTTTGATCATAACACTATTGAGGCTTACTGAGTTGAGAAGAACAGCGTTTTTGATACTTTCTTTTTTGTTTATATATATATATATATGGTCTCCCTTCCTTCTTCAATGTGTTTATATCATATATCGTCGAGGCTACCTACGTATATGTCTTTGAAACAGTGTATACATACTATTTATTTATATTTGGGCCATTTGTGCTCTTAATATCTATGCTCCC

mRNA sequence

AAGTCTAAGCTTAGAGATTGAAGAGACGCGAGATGTTGTATAGTGATTGATGAAACTTGGGTAAGGTCGAGTCGAAGTGTTTTGAAGGAAGGATGATCGAGAAATTTCATAGAGAGCAAATGCAAATTCTTCATTCCTTCTTCTCCTGAACCAACTCCTACTCGGCCTTCGCAAAAATTAGAATCCACATACCCTTTCTAATTCCTGCGATCGAGCAAGTTTTCGCTGTGCATAATCGTTGAGGGCGCTGTCATGTGGTTTGAGATACTCTGTGGTTTCATAGCGTTTAGATTGCTCAGACGATTCTTTGGTCAAGGGGATGGATTGGAGATCGAGACCTCTGATTCTAATGCCCTATTCGCCGTTGCTTCGAGATTAGAAAAGATTTATAGTGGAAAGATTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGCTTGCGACAGAGTATTGATATGGTGCTTGTAACCAAAGGGGAAGCAGTGGTGGTATTGGTAAAAAATCTTTCAGGTTTTGTTTCTGTGAGTGCTGATGGCAGCTGGATCTGTGAAGGCGACGGTAGACAAAAGTCAGAGATTCTGCCTGATCCGGTGGCTGAGACACGAAGATGGGCCTCAATTCTAGAGTCATACCTTGAGCGGAGAGGAGTTGCACTGCCAGAAGGATATTTGTCGTGGAAAGTTTTGCTTCCCAACCCAAAATTCCGAACAGTCCATTCAAACTATTTTCCTTCTGAAGTCATCACATATGATCAGTGGATACAGTTGAAACCAGAATCAAAAAGCGTGTTCTCTGGTTGGATAAAGAGTGCTCTGCGTGGAGGGAAAAAAGAGATGCAGGAATCGAAGGATGAGAAGCTAAATTTTGTCCTCAACACTGCACCCATGTGGGATAGGTTGGAATTAAAAGGAAATAACCTTGTTCTGGGAGAATTCCTGGAGTTCAAAGGGAAGAAAGAAGATATGCAGGCCTTGAGAGAGATCAAAAGATCAAAAGTTAGTTGCATAGTCATCCAGAAGATGAGAACGATCGGATTTGGTCCTTCAAGACTTCGTGTTTTATACTCTACTCGGAATTATCAAAATGAGGGGACCTCTGCTTCCGAGTGGAAGGAAATAACAATAGGATCCAATACAATGGTAGTATTTCAGATGGAATATTCTTCGAAAGTTCGAAAAATCAAGATCTCTTCAATTGTATCTCTATCACTAAGCGCCTGAAGATGTCTGGTCAGTGTTATTATTTTTAACTTTGATCATAACACTATTGAGGCTTACTGAGTTGAGAAGAACAGCGTTTTTGATACTTTCTTTTTTGTTTATATATATATATATATGGTCTCCCTTCCTTCTTCAATGTGTTTATATCATATATCGTCGAGGCTACCTACGTATATGTCTTTGAAACAGTGTATACATACTATTTATTTATATTTGGGCCATTTGTGCTCTTAATATCTATGCTCCC

Coding sequence (CDS)

ATGTGGTTTGAGATACTCTGTGGTTTCATAGCGTTTAGATTGCTCAGACGATTCTTTGGTCAAGGGGATGGATTGGAGATCGAGACCTCTGATTCTAATGCCCTATTCGCCGTTGCTTCGAGATTAGAAAAGATTTATAGTGGAAAGATTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGCTTGCGACAGAGTATTGATATGGTGCTTGTAACCAAAGGGGAAGCAGTGGTGGTATTGGTAAAAAATCTTTCAGGTTTTGTTTCTGTGAGTGCTGATGGCAGCTGGATCTGTGAAGGCGACGGTAGACAAAAGTCAGAGATTCTGCCTGATCCGGTGGCTGAGACACGAAGATGGGCCTCAATTCTAGAGTCATACCTTGAGCGGAGAGGAGTTGCACTGCCAGAAGGATATTTGTCGTGGAAAGTTTTGCTTCCCAACCCAAAATTCCGAACAGTCCATTCAAACTATTTTCCTTCTGAAGTCATCACATATGATCAGTGGATACAGTTGAAACCAGAATCAAAAAGCGTGTTCTCTGGTTGGATAAAGAGTGCTCTGCGTGGAGGGAAAAAAGAGATGCAGGAATCGAAGGATGAGAAGCTAAATTTTGTCCTCAACACTGCACCCATGTGGGATAGGTTGGAATTAAAAGGAAATAACCTTGTTCTGGGAGAATTCCTGGAGTTCAAAGGGAAGAAAGAAGATATGCAGGCCTTGAGAGAGATCAAAAGATCAAAAGTTAGTTGCATAGTCATCCAGAAGATGAGAACGATCGGATTTGGTCCTTCAAGACTTCGTGTTTTATACTCTACTCGGAATTATCAAAATGAGGGGACCTCTGCTTCCGAGTGGAAGGAAATAACAATAGGATCCAATACAATGGTAGTATTTCAGATGGAATATTCTTCGAAAGTTCGAAAAATCAAGATCTCTTCAATTGTATCTCTATCACTAAGCGCCTGA

Protein sequence

MWFEILCGFIAFRLLRRFFGQGDGLEIETSDSNALFAVASRLEKIYSGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVVLVKNLSGFVSVSADGSWICEGDGRQKSEILPDPVAETRRWASILESYLERRGVALPEGYLSWKVLLPNPKFRTVHSNYFPSEVITYDQWIQLKPESKSVFSGWIKSALRGGKKEMQESKDEKLNFVLNTAPMWDRLELKGNNLVLGEFLEFKGKKEDMQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMVVFQMEYSSKVRKIKISSIVSLSLSA

Homology

[Close]

BLAST of CmaCh02G010590 vs. TAIR 10
Match: AT1G65020.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 396.7 bits (1018), Expect = 1.7e-110
Identity = 197/322 (61.18%), Postives = 251/322 (77.95%), Query Frame = 0


Query: 1   MWFEILCGFIAFRLLRRFFGQGDGLEIETSDSNALFAVASRLEKIYSGKIFVGLRIPDAD 60
           MW EI+CG + ++L+RRFF   +  ++ETSDS ALF+VA RLEK+Y GK +VGLRIPDAD
Sbjct: 1   MWIEIICGLVIYKLVRRFFYDDEFSDVETSDSTALFSVAHRLEKLYGGKAYVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVVLVKNLSGFVSVSADGSWICEGDGRQKSEILPDPVAETRRW 120
           T  RQ ID+VLVTKG+ VV+ VKNLSG V+V++DGSW+CEG     +E  PDP+AE ++ 
Sbjct: 61  TASRQDIDVVLVTKGDVVVISVKNLSGIVTVTSDGSWVCEGGKHHTTETFPDPLAEVKKQ 120

Query: 121 ASILESYLERRGVALPEGYLSWKVLLPNPKFRTVHSNYFPSEVITYDQWIQLKPESKSVF 180
           AS+LESYLE+RGV L EG +S KV++PNP FRT+H+  FPSEVITY+ W QLKP SKS  
Sbjct: 121 ASVLESYLEQRGVTLLEGNVSCKVVIPNPSFRTIHA--FPSEVITYEDWQQLKPVSKSKI 180

Query: 181 SGWIKSALRGGKKEMQESKDEKLNFVLNTAPMWDRLELKGNNLVLGEFLEFKGKKEDMQA 240
           SGW+K A   G KEMQES  +KLNF+L TAP WDR+ELK + +VLGEFLEFKGK+ED  A
Sbjct: 181 SGWVKGAFSTG-KEMQESSHQKLNFILGTAPTWDRVELKSSKIVLGEFLEFKGKQEDTLA 240

Query: 241 LREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMVVFQ 300
           LR IKRSKV  + IQK    G  PSRL+VLYS R+Y++EG+S +E KE+T+ S+T V+FQ
Sbjct: 241 LRNIKRSKVDRVSIQKTSMFGLAPSRLQVLYSYRDYRSEGSSGAESKEVTVRSSTEVLFQ 300

Query: 301 MEYSSKVRKIKISSIVSLSLSA 323
              S+K++K K+SS+VS+SLSA
Sbjct: 301 PRDSTKMKKFKLSSLVSISLSA 319

The following BLAST results are available for this feature:

BLAST of CmaCh02G010590 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G010590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65020.1	1.7e-110	61.18	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011528	Nuclease-related domain, NERD	PFAM	PF08378	NERD	coord: 36..130 e-value: 6.3E-9 score: 36.3
IPR011528	Nuclease-related domain, NERD	PROSITE	PS50965	NERD	coord: 30..147 score: 19.093046
None	No IPR available	PANTHER	PTHR35287	SI:ZFOS-911D5.4	coord: 1..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G010590.1	CmaCh02G010590.1	mRNA