CmaCh02G010420 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G010420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein YIP
Location	Cma_Chr02: 6205248 .. 6212248 (-)
RNA-Seq Expression	CmaCh02G010420
Synteny	CmaCh02G010420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCGGAACCCTGTGGAAAGGACATTTAACAGAATTCTTCTACTTCCTGGTTTATCGAGGAACGAAAATCTGCCGGATATCCCGAAACGCCCAATTTGGTTTCCTCCTGTTTGGATCTGATCGGATCTGATCTGATCTGATCTTCGTCTTCTTCATTTCAACGCTTTTTCTCATCATTTTCCCGAGAAAATCCCTTCCCGGGAAAATGTCTCACAGCGATACAATTCCTCTTCACCAATCCTCTCAGTCGGACATCGACGAGATCGAGAATCTCATCAACGCCAGCGTCCAAACCAGCTCCTCCACTGTTCTTCCAGCTCGCCCCCCAAGTCCTCCTAGGGCGTCTATTCCTGTATCTTCCTCACCGTTTATACAGTCCAATCTCCCTCCACTTCCCCCCAAATCAACTAACCAGAAGCCGCCGACTGTCTTCCCTGCTCCGCCGCCGCTGCCTGTCTCTAGTAATGGCCGGTCTGATACATCGCCGACTGGATTCGGATCGGGGCCCAACACACTGACGGAGCCGGTATGGGATACGGTCAAGCGGGATCTTTCCCGGATCGTCAACAATTTGAAGCTTGTGGTTTTTCCCAACCCTTTCCGTGAGGACCCCGGAAAGGCTTTGAGGGATTGGGATCTGTGGGGGCCTTTCTTCTTCATTGTGTTCCTCGGTCTTACTCTTTCGTGGTCTGCATCGGTCAAGAAGGTCAGCGTCGTAAAGTTTAAGTTAGTTGTAATCGCCAGTTTACTGTCTTCTGTTTGCTTTAAGTTCGCGCACAAGTTTCAGTTCGGATCAAGCTTTTTAGTTGTTCTTTTATTTAACCTTGTGATGCTCTGATTCGGGTTGAACCAGCTATCTGCAATTATTTAGATTTGAAGTCGAGTTGAATTCATTGTTGGAAGTCAAATGTAGCTTAGTTTTAGTATTTTGTACTTAAGAGTATCCAGAGTAGCCTAAATCAAGTGATTGAAGCGCTTTTGTTTAGATCCCTTGAAACTGTCTTGGCTAGTTTGTTTCATTGGATTTTAATAGGAAATGGTGACTCTAGACACTTAGAATTTAGAACATGCCGGAAATCACAGGGACATTGCATAATCGGATTTTATGAGAAAAGATTTAGAAGAGGAAATATGGATATGGAGTGTCAAGATTTCCATTTCTCGTTCGTTAATCCAAGGTAGTAATATTGTTACTCTGATATAAAACAACAGTGGCATGAACTGAATCCTTATATAGAAGAAACATCTGCTCTTTCTTCAGGCAGGGGGACTTGTTCCCTATGATATGTACATATACGACTATGGATGCTAGACCAAGGCGTATTACCATTCTTTAGTTATAAGTTCACCTCCAAGAAATTTAGAATCCATGGAATCTCAAAGTTACTTCTTGTGGTTATTGTGTTATTTCACATTATTTGATTTTACTGTGTTGTTATTCCCTGTTACCCCTTTCTATAGTATCACTCTTGATGCTGGGTTTGAATTCTTTAGTGCAGCCCCTTGCCTCCCGTCCCATTCAATGGAAGTAATTTCTCTTATGAAAACATTTAATTTTTTTATTTGCTCGTACTACTCGTTTCTTTGAAACTGAAATACTTCACTAGAAGTAATTTCTCTTAGGAATATGTTTTTCTAGCTGCAAATTAGTTTAGGGTCCAAAGAGATTTTCTTCAAGATGTGGAAGTTTAAGACTGCATGAATTGCAATTATTCTTGTGATTATACCTGGGCAAACTTACGTATGAGAAGGATATAAGGGAGATACCTGAGGATTTCAATCAATCTTAGCTAGTGTGGCTTATGTAGAAAGAGCGTTGGAGACCACTTCTTTTGAGGGTTATTTTCCTTAAGAGCTTGGATGCTCTTCAACTGTATTGGTGTGGCTGGCTGGTGTCGTATCATACTTGCACAGCAGATTTTGTTCTGGGTGATCCTCAAAGCGAACAAGTAAATATTTTGGAAAAATTTATGATGTGTAGAGTGTTTTGAGAGAAAGGTACAGAAGAATTAAGGAGTGTCATAGAGACTCTTATCAATGCAAATAGAGTTTTTTTTGTTCTTGTCTGTAGATCGTGCACTCTGGACAAATCCTTTAGTAACTATGCTTCCTCTGGAATACCTTCTTGTTGGATGGAGTTTCTTGTCTCACACACCTCTCTTGTATTGTTTTGTTCTCAATGAATTTTCTTGTGTGTATGCATATGTTGGCAAAATTATCAGGCCCTCCTTGCTTTCTTTACCCTGCCGAGTGTCACAACCTAATTAGGAAGAGAGTAGGTTGTGACCCTCACGTTACAACAAGACAAGAGAAGCGGCGACCCTCAAGTGGTGCCCATCCGATCACACGAGGGCGTAGACGAGTGACATGATGCAACCGAGGAAGACAGTGCATCATCTAACACACCACACAAAGTGGGCATTGAAGAGAAGTCGAGACAGAAGCAAGATAAGGGCAACGAGTAGACAAGAATGTCAAAGATAGGCTTGTTGAAGGGTCGGGTAGGGCCCGGGCCATAACCTCAAAAGTTGGGGGTTCGAAAGTAATTTAGGCATGCAGTTCTAAAATTTAAGTCCGTCCATATGATAAATGAATGCTCGCCAAATTTAGTGTCAATAGGACATTGGATGGGCGCTCCACGACACCATATGACCGTTCGCCAAAATGACATCTACTCGAGGAGTATTGAAAATGCATTAAAATGTACTATAAGGGGAGGTCTGGTGTCAGCTCTGCACCACCCCTGGGCCCTGTGACCTAAATAAGCTACCTTGTGGCACATGTGTGTGTCATAGTGAGGGGGAGTGTTCTGAGACGAGTGTCTCAGGCGACTTCCTTTGAAATGAGTTTTTTAAGGACAATACCGGGCGACACGGGTGTGCCAATATTGCGCCCCAGCCCGCGTGTCGGAGGTTGGATTATGCACCTAGTATCCGGTACGGTATCCGTAAATGACAAGCATAGGCAAGGGAGACTCAATGCCTATATAGAACCCGTATGGATGGATATATGGGATGTCTCGATGAGATGAGCGACACATGAGCCCGTTCTCGATGGCATGACCGAGTGAGTTGTGATGACCAACGACACCTGAGACTTGGGATAGCGTTAAGACATATGAGCTATGTCGATTGAGAACCAAGATGACAAGATGAGATGTGATGTTGCATTGAGAGACCTTGGCCTTGAATAGAGGCTAGGTCGAGCCGAACGACTTGGCCAAGTTTTGAGGCAATTCAGTTGTATTGTAGACTATTGAACATGCACGCGCAAATGGCGTGTGGTCGAACAAGCTTGGATTTCGCACAAACGATGTTCGGTTGGCGAAGACAAACCTCGCCTAAGGTCCGACAAAGCTACAAAGCCGGACGAAAAATATATATGGGGCTTGAATTCCCCTCAAGGCTAGTCGTGAGCGTGTCAAGATCACGACGCCGCACGGTTGAAAATGTACGACTGTGACACCTAACAATGTTGGATCAAGCCATTAAACTTCCCTCTCAATCCCACTTTCTGCTGGAACAGGGTGGATTTGGATGTCTGCAAATTGTCTCAATAGCATTGGTCCTTGCATTTTTCGACGTCGGATGACTTAGAATGGTCATATCCTTCTATAGTTCTATTTAAAGATCAAGTTTGATCGCAGATTTGGCTTAAATATCCTATACCATATGTATGTATGTATTTGAAAAAACTTATAAGTTGTCCTTATTTATGATGTGAATGCATGTTTTTATTTATTTATTTATTATTATTATTTTATTAGAAACAAACATAATGCAGATGTATGACAAAATATGTTTATAACCTTGTTTCCTTGTATACCATAACCACCTTACCATTACATTTGAAACATTTTTAACCATTCTCTATATATCTATTTGATGTTTTTCCAACCTGTCATTTGCCCTTTATTCTCATTCTTAATTTCTACTTTGTTGAATTATCATTGATAAAATAGAGGCTTTCTAAAATTTTGTGGGTATCCTACTAATGGTATTAATTGATTTCTTCTCAGTCTGAGGTGTTTGCTGTTGCATTTGCACTTCTTGCTGCCGGTGCAGTGATTCTGACCTTGAATGTGCTTCTCCTGGTAACTAAATCTCTCCTTCACTCTTCCCCCTGCTCCCTTTCCACTCTCCCAACCTATTCAAGGACATGTTTTAATCATCTTTCACTTTATACTCGTACAATTTTGTACTTTGCTGCCTTCTTGCCAGTGTTCATTGTTGATTTAGGAGTGTACATGTTGGATCTAGTGTTATCTGGTCTTTAGTAAATATGATCTAGCGTACATGGTATTAGTTGTGTTTGCTTGAGAAAAATTGAAATTGATCAAAACCCACTTTTACAGAAAATTGGAATCGCCTCTTTACGAGAACCTACTATGATATATTTTTTGTATTTATAAAACTGAACTTCACAGATCTCTAGGTCAGTTCTCTTTTGCAGTATGGTATGTCCTATAGCTCTACCAAAAAGCCTTAGTTCCTTGTTGCCAAATGTGTCGGCTAATTTTCTTTCTGAGCTCACATTGGTAATTGCAATATTTTAACTTACGGGATCATCTCCTTCGTTTGACTTTCTCAACCAAAGCTCTCTCTTCGAGAAATATGTCAATGAGATTAAAGGGGGTGGTTGGATGGCTTTAAGTCTAATGATGGGGAGACCTATTTAGTGACGATGAGTTTCAATTTTAGGTCTTTGCAATTGATTTTGTATAATCTCCTTGTTGAAAGACTCAAAACACTTGAACTTTTCTTTTTTAAATCTGAATAAGGAAATAAATTATGCATGGACAGTGAAAGGTTACAAATGAAGCAGTATTAAAGAGAGAAACAAAAACTTAAGAATCCCAACTTGAACTATCGATACTATAAAATCTACTCCCATTTCAACACTAAACATCTCTGTATACAACCCACATGCTTTCCCAAAAAGAAAGTCCACAAAAAGCCTCCTTATCAGAATTAGTAACGAGGGAATATAATTAGAGAAGGGATGGGAGAGGGAGCATGAAGAAGAACAATGAAACTTAGTTGTATCAAAGCTTTCTCCCAATTCACGTTCCTTTTGATGGAAGATTTGATAGTTCATCGTCATGTTCGTTGTCTTGACTTTTCATTTATATATATATATATATGTATGTATGTATGTATGTATATATGTATATGTATATGTATAATATGTATACATTTTAATTGAATCTTAGCCAAAATATTAACTGGCCACCTCTTCAAATACGCACGACCCTTGAAATTTATGTAATAACCAAAACCAACGTTGCCAAGTGAAAGAGCAATGAAAAAAATAATGGTTCACCTCGTATTCACACACACCTACCTGACCGAAGACTCATATTAGAGAAGTTCTTATGAGTGCCTTCTGCTGTGTTTAAGCCTCCATGATACATAATACAATAGTCCATAAAAGATTAATTGGTAATTTTTGTTTCCATTTCATTAAAGCCAATTCAACAATTTCTTACATTTGTGAAGTAAAAGAACCAAGATTTTATCTAGAACATCCCCGGTGAGTTTAAGCATCTTCATTTTCTATCTTCCATTGGATAAATACAATCCTCATTAGATTACAATGAGCAATATTCTCCTCCCAAACACCTTCTATAACACCTCTTTTAACCGTTAAAATTCTAGGAAAGCAATGTAAGAGATTGTGGCTCCACCCACCTTTCCTTCCAGAATAACGGCTTCTTTCCCATTTCTAACTGTAATTGAGGAACATCTATCAAATAATGATCCAAGCATTGAAATAGTTTTCCTCTGCTAAGCAAACATACTGATTTTCTTCCTTTACAGTAACGAGAATTCTGTGTATTGAATTCTCTTGATTGAGATAGATGGTAGAGAGTTCTCTGTGAGACTTGTGTGCTTTATCTCACTGATATCTTCGTATATTTTTGCTTCACCCTCAAGTCATAGGGGAGGAGTATTGCGCCTTGATGTACACTGGTAAGCTGGTAACGGGTGCTCCATCAGTTTCCTAGAAAGGGGTGAATTAGTTATTCTTATGTAGTGCTTTTATTGCACTAAATTACTGATCATTATTTGCTGGCTGCCAGCGAATTTGTTGTCATAGCCAGGAATTCAATATAACCGTCATTCAATGAGTTTTCATTTCCTTCATATCTCTAACCCCATAAACTAATCCCACAACAAGAATTTTTTATTTTTCACTCGATTAACTGAACAACCCACCTTGACTTGCCCAAAATAATTGGAGACTTCACTTTGATCACTGCAGGGTGGACATATAATTTTCTTCCAGAGCTTGAGTCTCTTGGGATATTGCCTGTTCCCTCTAGATATTGGAGCATTGATCTGCATGTTGAAGGACAATGTAGTAGTGAAGATAGTTGTAGTGTGTGTGACCTTGGCATGGAGTTCATGGGCTGCATATCCTTTCATGAGTGCAGCAGTAAACCCAAGAAGAAAAGCCCTTGCCCTCTACCCCGTGTTCCTCATGTATGTATCAGTTGGTTTCCTCATCATTGCCATTGATTGAGACCAGTATGCTTCAACAAATTAGGAATGTTACTTCAACTTTTTTTGTTTTTGTTGTTGACTTATATGATGTCTTGAAACTCGGATCTCCCTGGATGGATCATCACATTCAGTGACAGCAAATTTTGCTTGCTGGAAACCCAAATCTGTGTAGCTTCATGTATCTACTTGTTGTTCATTCATTCACTCACATTATTCTTCCACTCTCCATCTCTCTAACATGCATGAAAATTGTATTCTCTCTCACACATGCACACCACTCCACTCATTCCCATTTCCTCTCTGCTTTGTTGTAAGAGCTTCATATTCTCTCTCTTACATGCACAGTTCATTCTACTTCGAACGCTTCTTCCTCCTCATTTCTCCTACTAACATCCAAACCCCATTTACTGTCTTTGATCCTTCCATGGCCCTCTTGGTTCGTCACTTTCTTTTTCAAGTTACAATAATATTCCCCTTACCACTTACAAACTTTCCA

mRNA sequence

AGCGGAACCCTGTGGAAAGGACATTTAACAGAATTCTTCTACTTCCTGGTTTATCGAGGAACGAAAATCTGCCGGATATCCCGAAACGCCCAATTTGGTTTCCTCCTGTTTGGATCTGATCGGATCTGATCTGATCTGATCTTCGTCTTCTTCATTTCAACGCTTTTTCTCATCATTTTCCCGAGAAAATCCCTTCCCGGGAAAATGTCTCACAGCGATACAATTCCTCTTCACCAATCCTCTCAGTCGGACATCGACGAGATCGAGAATCTCATCAACGCCAGCGTCCAAACCAGCTCCTCCACTGTTCTTCCAGCTCGCCCCCCAAGTCCTCCTAGGGCGTCTATTCCTGTATCTTCCTCACCGTTTATACAGTCCAATCTCCCTCCACTTCCCCCCAAATCAACTAACCAGAAGCCGCCGACTGTCTTCCCTGCTCCGCCGCCGCTGCCTGTCTCTAGTAATGGCCGGTCTGATACATCGCCGACTGGATTCGGATCGGGGCCCAACACACTGACGGAGCCGGTATGGGATACGGTCAAGCGGGATCTTTCCCGGATCGTCAACAATTTGAAGCTTGTGGTTTTTCCCAACCCTTTCCGTGAGGACCCCGGAAAGGCTTTGAGGGATTGGGATCTGTGGGGGCCTTTCTTCTTCATTGTGTTCCTCGGTCTTACTCTTTCGTGGTCTGCATCGGTCAAGAAGTCTGAGGTGTTTGCTGTTGCATTTGCACTTCTTGCTGCCGGTGCAGTGATTCTGACCTTGAATGTGCTTCTCCTGGGTGGACATATAATTTTCTTCCAGAGCTTGAGTCTCTTGGGATATTGCCTGTTCCCTCTAGATATTGGAGCATTGATCTGCATGTTGAAGGACAATGTAGTAGTGAAGATAGTTGTAGTGTGTGTGACCTTGGCATGGAGTTCATGGGCTGCATATCCTTTCATGAGTGCAGCAGTAAACCCAAGAAGAAAAGCCCTTGCCCTCTACCCCGTGTTCCTCATGTATGTATCAGTTGGTTTCCTCATCATTGCCATTGATTGAGACCAGTATGCTTCAACAAATTAGGAATGTTACTTCAACTTTTTTTGTTTTTGTTGTTGACTTATATGATGTCTTGAAACTCGGATCTCCCTGGATGGATCATCACATTCAGTGACAGCAAATTTTGCTTGCTGGAAACCCAAATCTGTGTAGCTTCATGTATCTACTTGTTGTTCATTCATTCACTCACATTATTCTTCCACTCTCCATCTCTCTAACATGCATGAAAATTGTATTCTCTCTCACACATGCACACCACTCCACTCATTCCCATTTCCTCTCTGCTTTGTTGTAAGAGCTTCATATTCTCTCTCTTACATGCACAGTTCATTCTACTTCGAACGCTTCTTCCTCCTCATTTCTCCTACTAACATCCAAACCCCATTTACTGTCTTTGATCCTTCCATGGCCCTCTTGGTTCGTCACTTTCTTTTTCAAGTTACAATAATATTCCCCTTACCACTTACAAACTTTCCA

Coding sequence (CDS)

ATGTCTCACAGCGATACAATTCCTCTTCACCAATCCTCTCAGTCGGACATCGACGAGATCGAGAATCTCATCAACGCCAGCGTCCAAACCAGCTCCTCCACTGTTCTTCCAGCTCGCCCCCCAAGTCCTCCTAGGGCGTCTATTCCTGTATCTTCCTCACCGTTTATACAGTCCAATCTCCCTCCACTTCCCCCCAAATCAACTAACCAGAAGCCGCCGACTGTCTTCCCTGCTCCGCCGCCGCTGCCTGTCTCTAGTAATGGCCGGTCTGATACATCGCCGACTGGATTCGGATCGGGGCCCAACACACTGACGGAGCCGGTATGGGATACGGTCAAGCGGGATCTTTCCCGGATCGTCAACAATTTGAAGCTTGTGGTTTTTCCCAACCCTTTCCGTGAGGACCCCGGAAAGGCTTTGAGGGATTGGGATCTGTGGGGGCCTTTCTTCTTCATTGTGTTCCTCGGTCTTACTCTTTCGTGGTCTGCATCGGTCAAGAAGTCTGAGGTGTTTGCTGTTGCATTTGCACTTCTTGCTGCCGGTGCAGTGATTCTGACCTTGAATGTGCTTCTCCTGGGTGGACATATAATTTTCTTCCAGAGCTTGAGTCTCTTGGGATATTGCCTGTTCCCTCTAGATATTGGAGCATTGATCTGCATGTTGAAGGACAATGTAGTAGTGAAGATAGTTGTAGTGTGTGTGACCTTGGCATGGAGTTCATGGGCTGCATATCCTTTCATGAGTGCAGCAGTAAACCCAAGAAGAAAAGCCCTTGCCCTCTACCCCGTGTTCCTCATGTATGTATCAGTTGGTTTCCTCATCATTGCCATTGATTGA

Protein sequence

MSHSDTIPLHQSSQSDIDEIENLINASVQTSSSTVLPARPPSPPRASIPVSSSPFIQSNLPPLPPKSTNQKPPTVFPAPPPLPVSSNGRSDTSPTGFGSGPNTLTEPVWDTVKRDLSRIVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID

Homology

[Close]

BLAST of CmaCh02G010420 vs. ExPASy Swiss-Prot
Match: Q93VH1 (Protein YIP4b OS=Arabidopsis thaliana OX=3702 GN=YIP4B PE=1 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 9.7e-123
Identity = 235/280 (83.93%), Postives = 254/280 (90.71%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTSSSTVLPARPPSPPRASIPVSSSPFIQSNL 60
           MSH+DTIPL+QSSQSDIDEIEN++N S Q+   TVLPARPPSP R SIPVSSSPF+QSNL
Sbjct: 1   MSHNDTIPLYQSSQSDIDEIENMMNDSFQSGPGTVLPARPPSPIRPSIPVSSSPFVQSNL 60

Query: 61  PPLPPKSTNQKPPTV-FPAPPPLPVSSN-GRSDTSPTGFGSGPNTLTEPVWDTVKRDLSR 120
           PPLPP S++     +  PAPPPLP + N G      +GFGS PNTLTEPVWDTVKRDLSR
Sbjct: 61  PPLPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNTLTEPVWDTVKRDLSR 120

Query: 121 IVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL 180
           IV+NLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL
Sbjct: 121 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL 180

Query: 181 AAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVVVKIVVVCVTLAW 240
           AAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDNV++K+VVV VTLAW
Sbjct: 181 AAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAW 240

Query: 241 SSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           SSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 241 SSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAIN 280

[Close]

BLAST of CmaCh02G010420 vs. ExPASy Swiss-Prot
Match: O64614 (Protein YIP4a OS=Arabidopsis thaliana OX=3702 GN=YIP4A PE=1 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 7.7e-120
Identity = 234/282 (82.98%), Postives = 249/282 (88.30%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTSSSTVLPARPPSPPRASIPV----SSSPFI 60
           MS  DT+PLH SSQSDIDEIENLIN SVQ+   TVL ARPPSP R SIPV    SSSPF+
Sbjct: 1   MSQGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFM 60

Query: 61  QSNLPPLPPKSTNQKPPTVFPAPPPLPVSSNGRSDTSPTGFGSGPNTLTEPVWDTVKRDL 120
           QSNLPPL P S+ QK  T  P PPPLP  SN  +    + FGS PNTLTEPVWDTVKRDL
Sbjct: 61  QSNLPPLHPSSSAQK-VTHVPVPPPLPAVSNSSNFQGASAFGSPPNTLTEPVWDTVKRDL 120

Query: 121 SRIVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 180
           SRIV+NLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA
Sbjct: 121 SRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 180

Query: 181 LLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVVVKIVVVCVTL 240
           LLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDNV++K+VVV VTL
Sbjct: 181 LLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTL 240

Query: 241 AWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           AWSSWAAYPFMS+AVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 241 AWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAIN 281

[Close]

BLAST of CmaCh02G010420 vs. ExPASy Swiss-Prot
Match: Q54RZ2 (Protein YIPF6 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf6 PE=3 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-28
Identity = 74/177 (41.81%), Postives = 109/177 (61.58%), Query Frame = 0


Query: 101 PNTLTEPVWDTVKRDLSRIVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLS 160
           PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct: 7   PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 66

Query: 161 WSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICM 220
            SA  +K+  F + F ++  GA I+T+N  LL G+I FFQS+ +LGYC+FPL I  +I  
Sbjct: 67  ISAEEQKALEFTIVFVVVWCGAAIVTVNGQLLCGNISFFQSVCILGYCIFPLTIATIIIW 126

Query: 221 LKDN--VVVKIVVVCVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLII 276
           +  N  ++VK+ +V     WSS+A+Y F+ ++V   R+ LA+YPV L Y+ + +L++
Sbjct: 127 IIQNFTMIVKLPIVGGAWFWSSFASYGFLGSSVPESRRLLAVYPVLLFYLVIAWLVV 180

[Close]

BLAST of CmaCh02G010420 vs. ExPASy Swiss-Prot
Match: Q28CH8 (Protein YIPF6 OS=Xenopus tropicalis OX=8364 GN=yipf6 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-28
Identity = 75/187 (40.11%), Postives = 110/187 (58.82%), Query Frame = 0


Query: 102 NTLTEPVWDTVKRDLSRIVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSW 161
           +TL EPV DT+ RDL  + N    V++P    +     LRDWDLWGP    V L L L  
Sbjct: 48  STLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLRDWDLWGPLVLCVSLALMLQG 107

Query: 162 SASVKKSE---VFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALI 221
             +  K +    FA  F ++  GAV++TLN  LLGG I FFQSL +LGYC+ PL +  L+
Sbjct: 108 GNADSKDDGGPQFAEVFVIIWFGAVVITLNSKLLGGTISFFQSLCVLGYCILPLTVAMLV 167

Query: 222 CML-------KDNVVVKIVVVCVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVG 279
           C L         + +V++VVV V  AWS++A+  F++ +  P R+ALA+YP+FL Y  + 
Sbjct: 168 CRLVLLLSHTTASFIVRLVVVTVMFAWSTFASTAFLADSQPPNRRALAVYPIFLFYFVIS 227

[Close]

BLAST of CmaCh02G010420 vs. ExPASy Swiss-Prot
Match: Q4QQU5 (Protein YIPF6 OS=Rattus norvegicus OX=10116 GN=Yipf6 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-26
Identity = 78/185 (42.16%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 102 NTLTEPVWDTVKRDLSRIVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSW 161
           +TL E +  T+ RDL  +      V++P          LRDWDLWGP    V L L L  
Sbjct: 52  STLNESIRRTIMRDLKAVGRKFMHVLYP----RKSNTLLRDWDLWGPLILCVSLALMLQK 111

Query: 162 SASVKK----SEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGAL 221
           S+   K    S  FA  F ++  GAV +TLN  LLGG+I FFQSL +LGYC+ PL+I  L
Sbjct: 112 SSVEGKRDGGSPEFAEVFVIIWFGAVTITLNSKLLGGNISFFQSLCVLGYCVLPLNIAML 171

Query: 222 ICML-------KDNVVVKIVVVCVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSV 276
           IC L         N ++++ VV V  AWS  A+  F++    P RKALA+YPVFL Y  V
Sbjct: 172 ICRLLLLAGQGPINFMIRLFVVLVMFAWSVIASTAFLADCQPPNRKALAVYPVFLFYFVV 231

[Close]

BLAST of CmaCh02G010420 vs. TAIR 10
Match: AT4G30260.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 441.0 bits (1133), Expect = 6.9e-124
Identity = 235/280 (83.93%), Postives = 254/280 (90.71%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTSSSTVLPARPPSPPRASIPVSSSPFIQSNL 60
           MSH+DTIPL+QSSQSDIDEIEN++N S Q+   TVLPARPPSP R SIPVSSSPF+QSNL
Sbjct: 1   MSHNDTIPLYQSSQSDIDEIENMMNDSFQSGPGTVLPARPPSPIRPSIPVSSSPFVQSNL 60

Query: 61  PPLPPKSTNQKPPTV-FPAPPPLPVSSN-GRSDTSPTGFGSGPNTLTEPVWDTVKRDLSR 120
           PPLPP S++     +  PAPPPLP + N G      +GFGS PNTLTEPVWDTVKRDLSR
Sbjct: 61  PPLPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNTLTEPVWDTVKRDLSR 120

Query: 121 IVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL 180
           IV+NLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL
Sbjct: 121 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL 180

Query: 181 AAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVVVKIVVVCVTLAW 240
           AAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDNV++K+VVV VTLAW
Sbjct: 181 AAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAW 240

Query: 241 SSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           SSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 241 SSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAIN 280

[Close]

BLAST of CmaCh02G010420 vs. TAIR 10
Match: AT2G18840.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 431.4 bits (1108), Expect = 5.5e-121
Identity = 234/282 (82.98%), Postives = 249/282 (88.30%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTSSSTVLPARPPSPPRASIPV----SSSPFI 60
           MS  DT+PLH SSQSDIDEIENLIN SVQ+   TVL ARPPSP R SIPV    SSSPF+
Sbjct: 1   MSQGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFM 60

Query: 61  QSNLPPLPPKSTNQKPPTVFPAPPPLPVSSNGRSDTSPTGFGSGPNTLTEPVWDTVKRDL 120
           QSNLPPL P S+ QK  T  P PPPLP  SN  +    + FGS PNTLTEPVWDTVKRDL
Sbjct: 61  QSNLPPLHPSSSAQK-VTHVPVPPPLPAVSNSSNFQGASAFGSPPNTLTEPVWDTVKRDL 120

Query: 121 SRIVNNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 180
           SRIV+NLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA
Sbjct: 121 SRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 180

Query: 181 LLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVVVKIVVVCVTL 240
           LLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDNV++K+VVV VTL
Sbjct: 181 LLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTL 240

Query: 241 AWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           AWSSWAAYPFMS+AVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 241 AWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAIN 281

The following BLAST results are available for this feature:

BLAST of CmaCh02G010420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VH1	9.7e-123	83.93	Protein YIP4b OS=Arabidopsis thaliana OX=3702 GN=YIP4B PE=1 SV=1	[more]
O64614	7.7e-120	82.98	Protein YIP4a OS=Arabidopsis thaliana OX=3702 GN=YIP4A PE=1 SV=1	[more]
Q54RZ2	1.1e-28	41.81	Protein YIPF6 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf6 PE=3 SV=2	[more]
Q28CH8	1.8e-28	40.11	Protein YIPF6 OS=Xenopus tropicalis OX=8364 GN=yipf6 PE=2 SV=1	[more]
Q4QQU5	6.5e-26	42.16	Protein YIPF6 OS=Rattus norvegicus OX=10116 GN=Yipf6 PE=1 SV=1	[more]

BLAST of CmaCh02G010420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30260.1	6.9e-124	83.93	Integral membrane Yip1 family protein	[more]
AT2G18840.1	5.5e-121	82.98	Integral membrane Yip1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006977	Yip1 domain	PFAM	PF04893	Yip1	coord: 141..272 e-value: 9.3E-13 score: 48.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR21236:SF23	PROTEIN YIPF	coord: 4..277
None	No IPR available	PANTHER	PTHR21236	GOLGI MEMBRANE PROTEIN YIP1	coord: 4..277

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G010420.1	CmaCh02G010420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0016020	membrane