CmaCh02G009840 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G009840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Kri1_C domain-containing protein
Location	Cma_Chr02: 5863264 .. 5864101 (+)
RNA-Seq Expression	CmaCh02G009840
Synteny	CmaCh02G009840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTACGGCTATTTGATGGGAGCGATTCTAACGACGACAACTCAAAGAAATTAATCAGGATTATGCAAAAAAAGTTTGAGCATAATAAGAAGCGAGAGGATCTTCAGCGCTTAGAGGAACTAAAGAAGAAAGTTCTAATTGAAGACTCTGAATCTGAAAGCTCAGAATCTGAAACATCTTCCTCGGAGGAAGAAGAAGAAGACAGCAAAAAATTTAGGAAGGACCTGGAGTTCTTCAATGCATTAATCAAGGTCAAGAAGCAGGATCCGACCCTTAAACAGAAAGATGCCAAGCTTTTCGATTCAGATGATGACAACCATGAAAGACAGTGATGACATCAATAGTAGTTTAACAGAGAAGAAGAAAAGCAGTATGTACTTGAAAGATGTGATAGCGAAACATTTTATTGAAGAGGGCCCCGAATTTGATGATGAGAGGACTAAAAACATGGAGATTTATGATAAGGAGCAGGAAGAGATACGCAAGGTATTCTTTGAGGCAGCAGAAGTGCAAGATGATGAAGATGGTGAGGAAGAGTTGTTAAAAGTGAAGGAGCGATGATGATGGTGAGGAATAGGGGAAGACAAAGCTTGCTTATTGGATGTCAAAGATTTAGATGAGGATTTTGATCCAGAAGAGTATGACAAGATGATGAAGGTGGCTTTTGGTGAAGAATATTACGAGAAAGCGGACGATGCTCCTGAGTTCGGAAGTGATATGGATAATGAAGGTGATGATGATATCAAGAAACCTGATTTTGAAAAAGAGGACGAGTTGCTTGGATTGCCAAAAGGGTGGGCGTCATCTGAGTCGGGCGGGCTTCTTAGCAGCTAA

mRNA sequence

ATGAGTCTACGGCTATTTGATGGGAGCGATTCTAACGACGACAACTCAAAGAAATTAATCAGGATTATGCAAAAAAAGTTTGAGCATAATAAGAAGCGAGAGGATCTTCAGCGCTTAGAGGAACTAAAGAAGAAAGTTCTAATTGAAGACTCTGAATCTGAAAGCTCAGAATCTGAAACATCTTCCTCGGAGGAAGAAGAAGAAGACAGCAAAAAATTTAGGAAGGACCTGGAGTTCTTCAATGCATTAATCAAGGTCAAGAAGCAGGATCCGACCCTTAAACAGAAAGATGCCAAGCTTTTCGATTCAGATGATGACAACCATGAAAGACATTTAACAGAGAAGAAGAAAAGCAGTATGTACTTGAAAGATGTGATAGCGAAACATTTTATTGAAGAGGGCCCCGAATTTGATGATGAGAGGACTAAAAACATGGAGATTTATGATAAGGAGCAGGAAGAGATACGCAAGGTATTCTTTGAGGCAGCAGAAGTGCAAGATGATGAAGATGATGAGGATTTTGATCCAGAAGAGTATGACAAGATGATGAAGGTGGCTTTTGGTGAAGAATATTACGAGAAAGCGGACGATGCTCCTGAGTTCGGAAGTGATATGGATAATGAAGGTGATGATGATATCAAGAAACCTGATTTTGAAAAAGAGGACGAGTTGCTTGGATTGCCAAAAGGGTGGGCGTCATCTGAGTCGGGCGGGCTTCTTAGCAGCTAA

Coding sequence (CDS)

ATGAGTCTACGGCTATTTGATGGGAGCGATTCTAACGACGACAACTCAAAGAAATTAATCAGGATTATGCAAAAAAAGTTTGAGCATAATAAGAAGCGAGAGGATCTTCAGCGCTTAGAGGAACTAAAGAAGAAAGTTCTAATTGAAGACTCTGAATCTGAAAGCTCAGAATCTGAAACATCTTCCTCGGAGGAAGAAGAAGAAGACAGCAAAAAATTTAGGAAGGACCTGGAGTTCTTCAATGCATTAATCAAGGTCAAGAAGCAGGATCCGACCCTTAAACAGAAAGATGCCAAGCTTTTCGATTCAGATGATGACAACCATGAAAGACATTTAACAGAGAAGAAGAAAAGCAGTATGTACTTGAAAGATGTGATAGCGAAACATTTTATTGAAGAGGGCCCCGAATTTGATGATGAGAGGACTAAAAACATGGAGATTTATGATAAGGAGCAGGAAGAGATACGCAAGGTATTCTTTGAGGCAGCAGAAGTGCAAGATGATGAAGATGATGAGGATTTTGATCCAGAAGAGTATGACAAGATGATGAAGGTGGCTTTTGGTGAAGAATATTACGAGAAAGCGGACGATGCTCCTGAGTTCGGAAGTGATATGGATAATGAAGGTGATGATGATATCAAGAAACCTGATTTTGAAAAAGAGGACGAGTTGCTTGGATTGCCAAAAGGGTGGGCGTCATCTGAGTCGGGCGGGCTTCTTAGCAGCTAA

Protein sequence

MSLRLFDGSDSNDDNSKKLIRIMQKKFEHNKKREDLQRLEELKKKVLIEDSESESSESETSSSEEEEEDSKKFRKDLEFFNALIKVKKQDPTLKQKDAKLFDSDDDNHERHLTEKKKSSMYLKDVIAKHFIEEGPEFDDERTKNMEIYDKEQEEIRKVFFEAAEVQDDEDDEDFDPEEYDKMMKVAFGEEYYEKADDAPEFGSDMDNEGDDDIKKPDFEKEDELLGLPKGWASSESGGLLSS

Homology

[Close]

BLAST of CmaCh02G009840 vs. ExPASy Swiss-Prot
Match: Q6DRJ4 (Protein KRI1 homolog OS=Danio rerio OX=7955 GN=kri1 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.4e-05
Identity = 55/171 (32.16%), Postives = 91/171 (53.22%), Query Frame = 0


Query: 18  KLIRIMQKKFEHNKKREDLQRLEELKKKVLIEDSESESSESETSSSEEEEEDSKKFRKDL 77
           K+ +   +K+E  +++E+LQR   LK +   ++ E+ S+ SE+ S + E E   K   D 
Sbjct: 5   KINKKFAEKYEKYRQKEELQR---LKDRYGDQEEENSSNSSESDSDDSEVELDPKL--DR 64

Query: 78  EFFNALIKVKKQDPTLKQKDAKLF---DSDDDNHERHLTEKK-KSSMYLKDVIAKHFIEE 137
           +F+  L  +KK+DP + QKDAK +    S   + E+  T K+ +  M+LKD   K  +E 
Sbjct: 65  DFYRTLSLLKKKDPKIYQKDAKFYTEETSGSGSDEQPSTSKQSEKPMFLKDYERKVILER 124

Query: 138 GPEFDDERTKNMEIYDKEQEEIRKVFF--EAAEVQD-------DEDDEDFD 176
           G +++D+ + + EI  K QE      +  E  E+Q+       D DDED D
Sbjct: 125 GGKYEDDDSADEEISAKMQERAASPTYIQEQKEIQESLRKFVQDSDDEDSD 170

[Close]

BLAST of CmaCh02G009840 vs. TAIR 10
Match: AT3G24080.1 (KRR1 family protein )

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-18
Identity = 114/429 (26.57%), Postives = 160/429 (37.30%), Query Frame = 0


Query: 3   LRLFDGSDSNDDNSKKLIRIMQKKFEHNKKREDLQRLEELKKKVLIEDSESESSESETSS 62
           L  F G D ++D +K+L+        HNK+REDLQR EE  K+ L  +SE    E ET S
Sbjct: 16  LSQFKGFDVDNDFAKRLL--------HNKEREDLQRYEEKNKQGLFSESE---EEPETES 75

Query: 63  SEEEEEDSKKFRKDLEFFNALIKVKKQDPTLKQKDAKLFDSDDDNHERHLTE-------K 122
             E + D      +L+F + LIKVKK+DP +K KDAK ++ DD++ E    +       K
Sbjct: 76  --EPDSDLGNPESNLKFVDLLIKVKKKDPIIKDKDAKFYEYDDESSEEDEVDKKDTKKKK 135

Query: 123 KKSSMYLKDVIAKHFIEEGPEF-------------------------------------- 182
           KK  MYLKDV A+H +E GPEF                                      
Sbjct: 136 KKKKMYLKDVQAQHLLEGGPEFVEEDEERKVRTYAEEQKETRKAVTDAWKAEGNESGEDD 195

Query: 183 ----------------DDERTKNMEIY-----------------------DKE-----QE 242
                           D+E  K M+ Y                       +KE     +E
Sbjct: 196 DFLRVVEKEGDDDVEVDEELAKKMDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEE 255

[Close]

BLAST of CmaCh02G009840 vs. TAIR 10
Match: AT3G24080.2 (KRR1 family protein )

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-18
Identity = 114/429 (26.57%), Postives = 160/429 (37.30%), Query Frame = 0


Query: 3   LRLFDGSDSNDDNSKKLIRIMQKKFEHNKKREDLQRLEELKKKVLIEDSESESSESETSS 62
           L  F G D ++D +K+L+        HNK+REDLQR EE  K+ L  +SE    E ET S
Sbjct: 16  LSQFKGFDVDNDFAKRLL--------HNKEREDLQRYEEKNKQGLFSESE---EEPETES 75

Query: 63  SEEEEEDSKKFRKDLEFFNALIKVKKQDPTLKQKDAKLFDSDDDNHERHLTE-------K 122
             E + D      +L+F + LIKVKK+DP +K KDAK ++ DD++ E    +       K
Sbjct: 76  --EPDSDLGNPESNLKFVDLLIKVKKKDPIIKDKDAKFYEYDDESSEEDEVDKKDTKKKK 135

Query: 123 KKSSMYLKDVIAKHFIEEGPEF-------------------------------------- 182
           KK  MYLKDV A+H +E GPEF                                      
Sbjct: 136 KKKKMYLKDVQAQHLLEGGPEFVEEDEERKVRTYAEEQKETRKAVTDAWKAEGNESGEDD 195

Query: 183 ----------------DDERTKNMEIY-----------------------DKE-----QE 242
                           D+E  K M+ Y                       +KE     +E
Sbjct: 196 DFLRVVEKEGDDDVEVDEELAKKMDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEE 255

The following BLAST results are available for this feature:

BLAST of CmaCh02G009840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DRJ4	9.4e-05	32.16	Protein KRI1 homolog OS=Danio rerio OX=7955 GN=kri1 PE=2 SV=1	[more]

BLAST of CmaCh02G009840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24080.1	7.6e-18	26.57	KRR1 family protein	[more]
AT3G24080.2	7.6e-18	26.57	KRR1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..72
IPR018034	KRR1 interacting protein 1	PFAM	PF05178	Kri1	coord: 163..222 e-value: 1.8E-5 score: 25.3
IPR018034	KRR1 interacting protein 1	PANTHER	PTHR14490	ZINC FINGER, ZZ TYPE	coord: 168..232 coord: 5..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009840.1	CmaCh02G009840.1	mRNA